Wall clock time and date at job start Tue Mar 31 2020 19:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 110.91355 * 2 1 4 4 C 1.55123 * 111.19566 * 236.08647 * 2 1 3 5 5 N 1.47430 * 104.72416 * 279.19133 * 4 2 1 6 6 C 1.34770 * 125.64755 * 155.81790 * 5 4 2 7 7 O 1.21283 * 120.00177 * 359.71478 * 6 5 4 8 8 C 1.50699 * 120.00115 * 179.72148 * 6 5 4 9 9 C 1.52998 * 109.47403 * 180.02562 * 8 6 5 10 10 N 1.46499 * 109.47354 * 179.97438 * 9 8 6 11 11 C 1.34754 * 120.04249 * 89.99590 * 10 9 8 12 12 N 1.30632 * 121.49505 * 179.74761 * 11 10 9 13 13 C 1.33526 * 121.50239 * 359.97438 * 12 11 10 14 14 C 1.36196 * 119.91014 * 359.97438 * 13 12 11 15 15 C 1.35017 * 120.04357 * 269.72205 * 10 9 8 16 16 O 1.21982 * 120.70576 * 0.25503 * 15 10 9 17 17 C 1.47022 * 108.69914 * 335.55213 * 5 4 2 18 18 C 1.54324 * 107.27361 * 1.28650 * 17 5 4 19 19 H 1.09000 * 110.71569 * 263.64946 * 18 17 5 20 20 N 1.46507 * 110.71704 * 140.55482 * 18 17 5 21 21 C 1.36933 * 119.99717 * 86.45525 * 20 18 17 22 22 H 1.08003 * 120.00305 * 359.97438 * 21 20 18 23 23 C 1.38818 * 119.99764 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99836 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99897 * 359.97438 * 23 21 20 26 26 H 1.48510 * 109.46922 * 90.00058 * 25 23 21 27 27 H 1.48499 * 109.47164 * 210.00125 * 25 23 21 28 28 H 1.48498 * 109.47448 * 330.00417 * 25 23 21 29 29 H 1.09001 * 109.47642 * 296.10097 * 1 2 3 30 30 H 1.09003 * 109.47144 * 56.10092 * 1 2 3 31 31 H 1.09001 * 109.47208 * 176.09539 * 1 2 3 32 32 H 1.09007 * 109.47122 * 183.89866 * 3 2 1 33 33 H 1.09000 * 109.47448 * 303.89723 * 3 2 1 34 34 H 1.09002 * 109.47178 * 63.90031 * 3 2 1 35 35 H 1.08998 * 110.49588 * 160.35207 * 4 2 1 36 36 H 1.08999 * 110.34222 * 37.95625 * 4 2 1 37 37 H 1.09001 * 109.47568 * 59.99447 * 8 6 5 38 38 H 1.09003 * 109.46935 * 299.99590 * 8 6 5 39 39 H 1.09002 * 109.47371 * 59.99749 * 9 8 6 40 40 H 1.09003 * 109.46720 * 299.99697 * 9 8 6 41 41 H 1.08000 * 119.25002 * 359.72879 * 11 10 9 42 42 H 1.08002 * 120.04219 * 179.97438 * 13 12 11 43 43 H 1.08008 * 120.70116 * 180.02562 * 14 13 12 44 44 H 1.09006 * 109.87620 * 120.70705 * 17 5 4 45 45 H 1.08998 * 109.88095 * 241.70911 * 17 5 4 46 46 H 0.96998 * 119.99626 * 266.45139 * 20 18 17 47 47 H 0.96992 * 119.99494 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0761 1.4292 0.0000 4 6 2.0908 -0.8069 -1.2002 5 7 2.0139 -2.2159 -0.7732 6 6 1.9472 -3.2829 -1.5938 7 8 1.9421 -3.1238 -2.7962 8 6 1.8789 -4.6737 -1.0176 9 6 1.8117 -5.6944 -2.1552 10 7 1.7459 -7.0465 -1.5950 11 6 0.5508 -7.6070 -1.3240 12 7 0.4589 -8.8123 -0.8287 13 6 1.5448 -9.5445 -0.5689 14 6 2.7829 -9.0363 -0.8212 15 6 2.8823 -7.7347 -1.3548 16 8 3.9718 -7.2415 -1.5950 17 6 2.0285 -2.2646 0.6962 18 6 2.0861 -0.8078 1.2023 19 1 3.1129 -0.5170 1.4241 20 7 1.2341 -0.6349 2.3816 21 6 1.7295 -0.9041 3.6295 22 1 2.7480 -1.2444 3.7444 23 6 0.9224 -0.7397 4.7469 24 7 1.3986 -0.9980 5.9464 25 14 -0.8391 -0.1505 4.5482 26 1 -1.7367 -1.3216 4.3797 27 1 -1.2443 0.6142 5.7550 28 1 -0.9366 0.7241 3.3521 29 1 -0.3634 0.4521 0.9228 30 1 -0.3633 0.5732 -0.8530 31 1 -0.3634 -1.0253 -0.0700 32 1 3.1636 1.4026 -0.0699 33 1 1.6704 1.9732 -0.8530 34 1 1.7835 1.9300 0.9229 35 1 3.1253 -0.5266 -1.3986 36 1 1.4765 -0.6449 -2.0859 37 1 0.9897 -4.7652 -0.3938 38 1 2.7670 -4.8609 -0.4139 39 1 2.7012 -5.6028 -2.7786 40 1 0.9238 -5.5074 -2.7592 41 1 -0.3515 -7.0468 -1.5203 42 1 1.4414 -10.5384 -0.1591 43 1 3.6699 -9.6176 -0.6163 44 1 1.1218 -2.7480 1.0600 45 1 2.9048 -2.8139 1.0402 46 1 0.3192 -0.3296 2.2783 47 1 0.8348 -0.8828 6.7271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996460608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:10 Heat of formation + Delta-G solvation = -5.625219 kcal Electronic energy + Delta-G solvation = -29201.531290 eV Core-core repulsion = 25192.552290 eV Total energy + Delta-G solvation = -4008.979000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.08405 -40.26474 -38.33586 -37.83940 -35.95371 -34.36590 -33.36663 -31.57762 -31.26516 -31.19017 -28.09339 -27.28086 -27.06472 -25.41590 -24.56967 -23.85086 -22.90129 -21.34917 -19.34165 -18.89124 -18.65519 -17.97291 -17.71956 -17.32866 -16.41616 -16.37378 -16.16808 -15.31240 -15.06274 -14.73835 -14.65442 -14.56791 -14.19365 -13.74628 -13.46621 -13.43486 -13.28988 -13.24273 -12.89313 -12.76265 -12.61863 -12.35665 -12.24405 -11.76765 -11.61451 -11.49324 -11.42797 -11.09193 -10.87672 -10.70213 -10.67368 -10.44504 -10.39656 -10.32881 -10.08829 -9.88963 -9.67743 -9.10778 -8.80942 -8.52206 -7.48039 -5.91713 -3.29942 0.30674 1.57320 2.06813 2.58411 3.03128 3.24413 3.26878 3.34030 3.35232 3.75169 4.19759 4.23366 4.43631 4.44420 4.48243 4.57852 4.78798 4.86692 4.90021 4.95784 5.08008 5.22159 5.29119 5.36526 5.40189 5.44619 5.52280 5.53985 5.58076 5.62391 5.72152 5.81162 5.89861 6.01802 6.03659 6.07887 6.14645 6.21691 6.28714 6.37485 6.38831 6.46711 6.64883 7.43469 7.55920 7.57502 7.83049 8.11198 8.27046 9.03705 9.75531 9.93700 11.25967 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.003228 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.743120 B = 8672.126911 C =10182.590893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 C -0.131 4.131 4 C 0.119 3.881 5 N -0.609 5.609 6 C 0.535 3.465 7 O -0.554 6.554 8 C -0.153 4.153 9 C 0.105 3.895 10 N -0.520 5.520 11 C 0.377 3.623 12 N -0.545 5.545 13 C 0.150 3.850 14 C -0.289 4.289 15 C 0.514 3.486 16 O -0.533 6.533 17 C 0.072 3.928 18 C 0.187 3.813 19 H 0.075 0.925 20 N -0.736 5.736 21 C -0.255 4.255 22 H 0.092 0.908 23 C 0.012 3.988 24 N -0.927 5.927 25 Si 0.879 3.121 26 H -0.283 1.283 27 H -0.289 1.289 28 H -0.276 1.276 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.205 0.795 42 H 0.167 0.833 43 H 0.155 0.845 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.366 0.634 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.975 -9.152 -16.140 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.091 4.091 3 C -0.188 4.188 4 C -0.004 4.004 5 N -0.341 5.341 6 C 0.323 3.677 7 O -0.433 6.433 8 C -0.194 4.194 9 C -0.017 4.017 10 N -0.237 5.237 11 C 0.093 3.907 12 N -0.267 5.267 13 C 0.012 3.988 14 C -0.313 4.313 15 C 0.314 3.686 16 O -0.410 6.410 17 C -0.054 4.054 18 C 0.075 3.925 19 H 0.093 0.907 20 N -0.379 5.379 21 C -0.384 4.384 22 H 0.110 0.890 23 C -0.185 4.185 24 N -0.574 5.574 25 Si 0.709 3.291 26 H -0.209 1.209 27 H -0.215 1.215 28 H -0.202 1.202 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.124 0.876 41 H 0.221 0.779 42 H 0.184 0.816 43 H 0.173 0.827 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.202 0.798 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.761 -9.318 -16.509 19.157 hybrid contribution -0.515 0.543 0.185 0.770 sum -3.275 -8.775 -16.324 18.820 Atomic orbital electron populations 1.21690 0.93923 1.01854 1.01782 1.22054 0.96215 0.95724 0.95102 1.21664 1.00650 0.94328 1.02191 1.22353 1.00842 0.79784 0.97414 1.48478 1.71390 1.06115 1.08156 1.19791 0.76437 0.85411 0.86043 1.90697 1.51762 1.86421 1.14429 1.21914 1.05909 0.92154 0.99426 1.21801 1.06990 0.77176 0.95744 1.46937 1.08402 1.17188 1.51199 1.25125 0.89161 0.90138 0.86296 1.68426 1.32177 1.05398 1.20715 1.22688 0.87424 0.98875 0.89856 1.22977 1.00819 0.96641 1.10896 1.17388 0.83616 0.87231 0.80410 1.90984 1.25374 1.71132 1.53542 1.23303 1.01991 1.02778 0.77300 1.21172 0.95661 0.89677 0.86009 0.90693 1.42856 1.12267 1.80641 1.02158 1.19077 0.98877 1.38736 0.81753 0.89008 1.24664 0.97702 1.01002 0.95102 1.69691 1.36163 1.54204 0.97340 0.86659 0.86475 0.78811 0.77147 1.20930 1.21506 1.20236 0.91723 0.92747 0.92583 0.92407 0.92898 0.91414 0.91301 0.90614 0.88120 0.87868 0.87002 0.87554 0.77908 0.81627 0.82730 0.90795 0.91694 0.79759 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 7.94 37.15 0.30 -1.56 16 2 C -0.09 -1.23 0.87 -152.25 -0.13 -1.37 16 3 C -0.13 -1.64 8.68 37.16 0.32 -1.31 16 4 C 0.12 1.57 5.85 -2.41 -0.01 1.55 16 5 N -0.61 -8.48 3.31 -170.38 -0.56 -9.05 16 6 C 0.54 7.32 7.85 -10.99 -0.09 7.23 16 7 O -0.55 -8.84 16.24 5.55 0.09 -8.75 16 8 C -0.15 -1.66 5.22 -27.88 -0.15 -1.81 16 9 C 0.11 1.01 4.67 -4.04 -0.02 1.00 16 10 N -0.52 -4.98 2.57 -121.11 -0.31 -5.29 16 11 C 0.38 2.78 11.48 -90.53 -1.04 1.74 16 12 N -0.54 -4.76 10.39 -14.48 -0.15 -4.91 16 13 C 0.15 1.22 11.20 -17.55 -0.20 1.02 16 14 C -0.29 -2.85 10.07 -39.26 -0.40 -3.24 16 15 C 0.51 6.39 7.45 -15.10 -0.11 6.28 16 16 O -0.53 -8.66 16.78 4.94 0.08 -8.58 16 17 C 0.07 1.10 5.92 -3.06 -0.02 1.08 16 18 C 0.19 3.14 2.85 -66.09 -0.19 2.95 16 19 H 0.08 1.32 8.02 -51.93 -0.42 0.90 16 20 N -0.74 -15.38 4.88 -51.64 -0.25 -15.63 16 21 C -0.25 -6.56 10.46 -15.06 -0.16 -6.72 16 22 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 23 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 24 N -0.93 -27.63 13.97 55.49 0.78 -26.85 16 25 Si 0.88 20.59 27.73 -169.99 -4.71 15.88 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.00 6.52 56.52 0.37 -5.63 16 29 H 0.06 0.99 6.34 -51.93 -0.33 0.66 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.78 7.91 -51.93 -0.41 0.37 16 32 H 0.06 0.68 8.07 -51.92 -0.42 0.26 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.87 7.99 -51.93 -0.41 0.46 16 36 H 0.08 0.99 7.95 -51.93 -0.41 0.58 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.11 1.33 7.41 -51.93 -0.38 0.95 16 40 H 0.11 0.77 7.98 -51.93 -0.41 0.36 16 41 H 0.20 0.68 8.03 -52.49 -0.42 0.26 16 42 H 0.17 0.85 8.06 -52.49 -0.42 0.42 16 43 H 0.16 1.33 8.06 -52.48 -0.42 0.90 16 44 H 0.07 1.18 8.03 -51.93 -0.42 0.76 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.37 7.57 3.12 -40.82 -0.13 7.44 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 384.78 15.07 5.80 5.80 Total: -1.00 -33.97 384.78 -8.37 -42.34 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -7.14 Total: 7.97 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -1.98 Total: 7.07 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.50 Total: -61.73 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.17 Total: -17.33 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.71 Total: 15.88 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.97 -8.37 -42.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996460608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.712 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds