Wall clock time and date at job start Tue Mar 31 2020 19:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 110.91355 * 2 1 4 4 C 1.55123 * 111.19566 * 236.08647 * 2 1 3 5 5 N 1.47430 * 104.72416 * 279.19133 * 4 2 1 6 6 C 1.34770 * 125.64755 * 155.81790 * 5 4 2 7 7 O 1.21283 * 120.00177 * 359.71478 * 6 5 4 8 8 C 1.50699 * 120.00115 * 179.72148 * 6 5 4 9 9 C 1.52998 * 109.47403 * 180.02562 * 8 6 5 10 10 N 1.46499 * 109.47354 * 179.97438 * 9 8 6 11 11 C 1.34754 * 120.04249 * 89.99590 * 10 9 8 12 12 N 1.30632 * 121.49505 * 179.74761 * 11 10 9 13 13 C 1.33526 * 121.50239 * 359.97438 * 12 11 10 14 14 C 1.36196 * 119.91014 * 359.97438 * 13 12 11 15 15 C 1.35017 * 120.04357 * 269.72205 * 10 9 8 16 16 O 1.21982 * 120.70576 * 0.25503 * 15 10 9 17 17 C 1.47022 * 108.69914 * 335.55213 * 5 4 2 18 18 C 1.54324 * 107.27361 * 1.28650 * 17 5 4 19 19 H 1.09000 * 110.71569 * 263.64946 * 18 17 5 20 20 N 1.46507 * 110.71704 * 140.55482 * 18 17 5 21 21 C 1.36933 * 119.99717 * 86.45525 * 20 18 17 22 22 H 1.08003 * 120.00305 * 359.97438 * 21 20 18 23 23 C 1.38818 * 119.99764 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99836 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99897 * 359.97438 * 23 21 20 26 26 H 1.48510 * 109.46922 * 90.00058 * 25 23 21 27 27 H 1.48499 * 109.47164 * 210.00125 * 25 23 21 28 28 H 1.48498 * 109.47448 * 330.00417 * 25 23 21 29 29 H 1.09001 * 109.47642 * 296.10097 * 1 2 3 30 30 H 1.09003 * 109.47144 * 56.10092 * 1 2 3 31 31 H 1.09001 * 109.47208 * 176.09539 * 1 2 3 32 32 H 1.09007 * 109.47122 * 183.89866 * 3 2 1 33 33 H 1.09000 * 109.47448 * 303.89723 * 3 2 1 34 34 H 1.09002 * 109.47178 * 63.90031 * 3 2 1 35 35 H 1.08998 * 110.49588 * 160.35207 * 4 2 1 36 36 H 1.08999 * 110.34222 * 37.95625 * 4 2 1 37 37 H 1.09001 * 109.47568 * 59.99447 * 8 6 5 38 38 H 1.09003 * 109.46935 * 299.99590 * 8 6 5 39 39 H 1.09002 * 109.47371 * 59.99749 * 9 8 6 40 40 H 1.09003 * 109.46720 * 299.99697 * 9 8 6 41 41 H 1.08000 * 119.25002 * 359.72879 * 11 10 9 42 42 H 1.08002 * 120.04219 * 179.97438 * 13 12 11 43 43 H 1.08008 * 120.70116 * 180.02562 * 14 13 12 44 44 H 1.09006 * 109.87620 * 120.70705 * 17 5 4 45 45 H 1.08998 * 109.88095 * 241.70911 * 17 5 4 46 46 H 0.96998 * 119.99626 * 266.45139 * 20 18 17 47 47 H 0.96992 * 119.99494 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0761 1.4292 0.0000 4 6 2.0908 -0.8069 -1.2002 5 7 2.0139 -2.2159 -0.7732 6 6 1.9472 -3.2829 -1.5938 7 8 1.9421 -3.1238 -2.7962 8 6 1.8789 -4.6737 -1.0176 9 6 1.8117 -5.6944 -2.1552 10 7 1.7459 -7.0465 -1.5950 11 6 0.5508 -7.6070 -1.3240 12 7 0.4589 -8.8123 -0.8287 13 6 1.5448 -9.5445 -0.5689 14 6 2.7829 -9.0363 -0.8212 15 6 2.8823 -7.7347 -1.3548 16 8 3.9718 -7.2415 -1.5950 17 6 2.0285 -2.2646 0.6962 18 6 2.0861 -0.8078 1.2023 19 1 3.1129 -0.5170 1.4241 20 7 1.2341 -0.6349 2.3816 21 6 1.7295 -0.9041 3.6295 22 1 2.7480 -1.2444 3.7444 23 6 0.9224 -0.7397 4.7469 24 7 1.3986 -0.9980 5.9464 25 14 -0.8391 -0.1505 4.5482 26 1 -1.7367 -1.3216 4.3797 27 1 -1.2443 0.6142 5.7550 28 1 -0.9366 0.7241 3.3521 29 1 -0.3634 0.4521 0.9228 30 1 -0.3633 0.5732 -0.8530 31 1 -0.3634 -1.0253 -0.0700 32 1 3.1636 1.4026 -0.0699 33 1 1.6704 1.9732 -0.8530 34 1 1.7835 1.9300 0.9229 35 1 3.1253 -0.5266 -1.3986 36 1 1.4765 -0.6449 -2.0859 37 1 0.9897 -4.7652 -0.3938 38 1 2.7670 -4.8609 -0.4139 39 1 2.7012 -5.6028 -2.7786 40 1 0.9238 -5.5074 -2.7592 41 1 -0.3515 -7.0468 -1.5203 42 1 1.4414 -10.5384 -0.1591 43 1 3.6699 -9.6176 -0.6163 44 1 1.1218 -2.7480 1.0600 45 1 2.9048 -2.8139 1.0402 46 1 0.3192 -0.3296 2.2783 47 1 0.8348 -0.8828 6.7271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996460608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:09 Heat of formation + Delta-G solvation = -27.467263 kcal Electronic energy + Delta-G solvation = -29202.478432 eV Core-core repulsion = 25192.552290 eV Total energy + Delta-G solvation = -4009.926142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.86723 -41.43155 -39.52332 -38.73390 -36.77417 -35.98581 -34.67010 -33.10929 -32.39979 -32.02109 -29.55462 -28.36292 -28.04064 -26.25009 -25.61773 -25.31311 -23.78056 -22.76198 -20.63455 -20.13537 -19.43623 -19.39372 -18.83393 -18.14807 -17.48626 -17.41862 -17.08845 -16.59372 -16.34098 -16.09175 -15.50620 -15.43668 -15.39312 -15.19816 -14.69338 -14.49772 -14.34801 -14.16156 -14.07539 -13.88327 -13.77769 -13.53578 -13.38798 -13.19660 -12.96168 -12.80380 -12.62317 -12.43544 -12.17640 -11.95965 -11.89580 -11.65046 -11.63840 -11.37366 -11.32411 -11.11603 -11.02360 -10.91648 -9.70231 -9.62564 -9.36365 -8.01460 -5.36505 -0.35650 0.77179 1.28286 1.38336 1.41220 1.48289 1.48919 1.96393 2.48637 2.58476 3.19730 3.23131 3.28246 3.48638 3.55697 3.57314 3.64284 3.73550 3.81238 3.87609 4.03883 4.19188 4.22459 4.28211 4.33951 4.40800 4.48583 4.61233 4.65748 4.69248 4.76883 4.83053 4.83593 4.85644 4.98430 5.03979 5.07951 5.15890 5.23108 5.36089 5.36483 5.48054 5.52300 5.78515 6.22027 6.42858 6.67903 6.77450 6.99685 7.08195 7.81778 8.01345 9.19683 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.003228 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.743120 B = 8672.126911 C =10182.590893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.079 4.079 3 C -0.129 4.129 4 C 0.120 3.880 5 N -0.609 5.609 6 C 0.536 3.464 7 O -0.573 6.573 8 C -0.146 4.146 9 C 0.112 3.888 10 N -0.517 5.517 11 C 0.384 3.616 12 N -0.557 5.557 13 C 0.169 3.831 14 C -0.314 4.314 15 C 0.499 3.501 16 O -0.588 6.588 17 C 0.085 3.915 18 C 0.176 3.824 19 H 0.063 0.937 20 N -0.735 5.735 21 C -0.232 4.232 22 H 0.059 0.941 23 C -0.056 4.056 24 N -0.982 5.982 25 Si 0.944 3.056 26 H -0.276 1.276 27 H -0.300 1.300 28 H -0.248 1.248 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.124 0.876 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.139 0.861 41 H 0.250 0.750 42 H 0.198 0.802 43 H 0.159 0.841 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.371 0.629 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.756 -9.162 -18.202 21.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.080 4.080 3 C -0.187 4.187 4 C -0.002 4.002 5 N -0.341 5.341 6 C 0.326 3.674 7 O -0.454 6.454 8 C -0.186 4.186 9 C -0.010 4.010 10 N -0.232 5.232 11 C 0.102 3.898 12 N -0.279 5.279 13 C 0.030 3.970 14 C -0.339 4.339 15 C 0.301 3.699 16 O -0.471 6.471 17 C -0.040 4.040 18 C 0.066 3.934 19 H 0.081 0.919 20 N -0.380 5.380 21 C -0.363 4.363 22 H 0.077 0.923 23 C -0.248 4.248 24 N -0.632 5.632 25 Si 0.771 3.229 26 H -0.202 1.202 27 H -0.227 1.227 28 H -0.172 1.172 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.142 0.858 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.157 0.843 41 H 0.265 0.735 42 H 0.215 0.785 43 H 0.177 0.823 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.208 0.792 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.574 -9.326 -18.645 21.579 hybrid contribution 0.398 0.503 0.763 0.997 sum -5.176 -8.823 -17.881 20.601 Atomic orbital electron populations 1.21688 0.93292 1.02049 1.02091 1.22004 0.96642 0.96097 0.93304 1.21663 1.01141 0.93436 1.02425 1.22404 1.01415 0.79133 0.97272 1.48475 1.71492 1.06774 1.07381 1.20151 0.75568 0.86059 0.85672 1.90691 1.52677 1.86792 1.15262 1.21876 1.06150 0.90823 0.99795 1.21749 1.07271 0.76871 0.95144 1.46911 1.08576 1.16986 1.50713 1.26070 0.89390 0.89965 0.84404 1.68532 1.32192 1.06002 1.21182 1.23150 0.86427 0.99768 0.87665 1.23002 1.02058 0.96053 1.12744 1.17847 0.83613 0.88175 0.80295 1.90944 1.27396 1.72430 1.56322 1.22920 1.01635 1.01232 0.78255 1.21340 0.94699 0.91399 0.85989 0.91919 1.42757 1.12884 1.80730 1.01604 1.19015 0.97332 1.36165 0.83745 0.92292 1.25418 1.02276 1.02423 0.94696 1.69875 1.37929 1.57028 0.98329 0.85599 0.81015 0.78709 0.77574 1.20247 1.22696 1.17231 0.93217 0.90197 0.92812 0.91920 0.90343 0.93094 0.90724 0.89607 0.85800 0.89550 0.89687 0.84339 0.73461 0.78502 0.82347 0.90965 0.92351 0.79195 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 7.94 71.98 0.57 -2.66 16 2 C -0.08 -2.00 0.87 -50.72 -0.04 -2.04 16 3 C -0.13 -2.92 8.68 71.98 0.62 -2.30 16 4 C 0.12 2.88 5.85 86.93 0.51 3.39 16 5 N -0.61 -15.91 3.31 -811.36 -2.69 -18.59 16 6 C 0.54 13.76 7.85 87.66 0.69 14.45 16 7 O -0.57 -17.25 16.24 -3.04 -0.05 -17.30 16 8 C -0.15 -2.96 5.22 29.85 0.16 -2.81 16 9 C 0.11 2.00 4.67 86.38 0.40 2.40 16 10 N -0.52 -9.18 2.57 -655.05 -1.68 -10.87 16 11 C 0.38 4.47 11.48 180.32 2.07 6.54 16 12 N -0.56 -8.09 10.39 -199.73 -2.08 -10.17 16 13 C 0.17 2.40 11.20 83.96 0.94 3.34 16 14 C -0.31 -6.09 10.07 22.48 0.23 -5.87 16 15 C 0.50 12.56 7.45 84.89 0.63 13.20 16 16 O -0.59 -20.24 16.78 -5.26 -0.09 -20.33 16 17 C 0.09 2.52 5.92 86.73 0.51 3.04 16 18 C 0.18 5.76 2.85 46.18 0.13 5.90 16 19 H 0.06 2.22 8.02 -2.39 -0.02 2.20 16 20 N -0.74 -30.13 4.88 -317.30 -1.55 -31.68 16 21 C -0.23 -12.10 10.46 84.04 0.88 -11.22 16 22 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 23 C -0.06 -3.11 5.50 84.86 0.47 -2.64 16 24 N -0.98 -60.24 13.97 21.65 0.30 -59.94 16 25 Si 0.94 42.21 27.73 68.60 1.90 44.11 16 26 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 27 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 28 H -0.25 -9.78 6.52 99.48 0.65 -9.13 16 29 H 0.05 1.36 6.34 -2.39 -0.02 1.35 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 1.32 7.91 -2.39 -0.02 1.30 16 32 H 0.06 1.35 8.07 -2.38 -0.02 1.33 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.72 7.99 -2.39 -0.02 1.71 16 36 H 0.09 1.95 7.95 -2.39 -0.02 1.93 16 37 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.08 2.04 7.41 -2.39 -0.02 2.03 16 40 H 0.14 1.57 7.98 -2.39 -0.02 1.55 16 41 H 0.25 0.42 8.03 -2.91 -0.02 0.40 16 42 H 0.20 1.42 8.06 -2.91 -0.02 1.39 16 43 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 44 H 0.07 2.19 8.03 -2.38 -0.02 2.17 16 45 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.37 14.59 3.12 -92.71 -0.29 14.30 16 47 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -77.01 384.78 3.47 -73.55 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.63 Total: 28.52 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: 8.77 Total: 22.70 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -7.69 Total: -131.24 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.14 Total: -37.63 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.90 Total: 44.11 kcal Total: -77.01 3.47 -73.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996460608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.079 kcal (2) G-P(sol) polarization free energy of solvation -77.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds