Wall clock time and date at job start Tue Mar 31 2020 18:53:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.35838 * 126.46446 * 2 1
4 4 H 0.97000 * 124.91265 * 359.96178 * 3 2 1
5 5 N 1.28450 * 110.16913 * 179.97438 * 3 2 1
6 6 C 1.31932 * 110.21327 * 0.02562 * 5 3 2
7 7 C 1.47527 * 126.45970 * 179.97438 * 6 5 3
8 8 O 1.21596 * 119.99565 * 180.02562 * 7 6 5
9 9 N 1.34774 * 120.00289 * 0.02562 * 7 6 5
10 10 C 1.46496 * 119.99940 * 179.97438 * 9 7 6
11 11 C 1.52998 * 115.54868 * 180.02562 * 10 9 7
12 12 C 1.53046 * 109.46072 * 85.61561 * 11 10 9
13 13 C 1.53185 * 109.31203 * 178.60160 * 12 11 10
14 14 N 1.46926 * 108.76820 * 54.65489 * 13 12 11
15 15 C 1.36936 * 120.62671 * 126.36116 * 14 13 12
16 16 H 1.08002 * 119.99618 * 207.69775 * 15 14 13
17 17 C 1.38813 * 120.00731 * 27.69967 * 15 14 13
18 18 N 1.31623 * 119.99411 * 17.35013 * 17 15 14
19 19 Si 1.86796 * 120.00194 * 197.35163 * 17 15 14
20 20 H 1.48492 * 109.47454 * 59.99917 * 19 17 15
21 21 H 1.48503 * 109.47044 * 180.02562 * 19 17 15
22 22 H 1.48499 * 109.46947 * 299.99784 * 19 17 15
23 23 C 1.46920 * 118.73938 * 306.38430 * 14 13 12
24 24 C 1.53039 * 109.46317 * 325.56149 * 11 10 9
25 25 C 1.53001 * 117.49792 * 34.34240 * 10 9 7
26 26 C 1.52995 * 117.50501 * 325.67893 * 10 9 7
27 27 C 1.35787 * 126.45875 * 179.68643 * 2 1 3
28 28 O 1.36082 * 127.26622 * 0.02562 * 27 2 1
29 29 H 1.08995 * 109.46771 * 90.01964 * 1 2 3
30 30 H 1.09005 * 109.46645 * 330.02603 * 1 2 3
31 31 H 1.08992 * 109.47474 * 210.02762 * 1 2 3
32 32 H 0.97001 * 119.99755 * 0.02562 * 9 7 6
33 33 H 1.08998 * 109.46207 * 205.58643 * 11 10 9
34 34 H 1.08999 * 109.49687 * 298.56631 * 12 11 10
35 35 H 1.09003 * 109.49181 * 58.66115 * 12 11 10
36 36 H 1.08998 * 109.59775 * 294.86600 * 13 12 11
37 37 H 1.09005 * 109.58437 * 174.43810 * 13 12 11
38 38 H 0.96998 * 119.99880 * 179.97438 * 18 17 15
39 39 H 1.09007 * 109.58526 * 293.81959 * 23 14 13
40 40 H 1.08997 * 109.59112 * 173.39697 * 23 14 13
41 41 H 1.09003 * 109.49822 * 301.33503 * 24 11 10
42 42 H 1.09000 * 109.49964 * 61.39959 * 24 11 10
43 43 H 1.09002 * 117.49587 * 359.97438 * 25 10 9
44 44 H 1.08999 * 117.50276 * 145.01639 * 25 10 9
45 45 H 1.09000 * 117.50056 * 214.98003 * 26 10 9
46 46 H 1.09005 * 117.49541 * 359.97296 * 26 10 9
47 47 H 0.96698 * 113.99907 * 89.99611 * 28 27 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3143 1.0924 0.0000
4 1 2.0045 2.0117 -0.0005
5 7 3.5472 0.7320 0.0005
6 6 3.6373 -0.5842 0.0004
7 6 4.8810 -1.3778 0.0003
8 8 4.8270 -2.5925 -0.0003
9 7 6.0769 -0.7564 0.0010
10 6 7.3118 -1.5445 0.0015
11 6 8.6107 -0.7359 0.0028
12 6 8.9842 -0.3734 1.4421
13 6 10.3030 0.4059 1.4423
14 7 10.1695 1.5613 0.5446
15 6 10.4512 2.8258 0.9884
16 1 9.9602 3.6771 0.5406
17 6 11.3680 3.0134 2.0137
18 7 12.2095 2.0515 2.3282
19 14 11.4073 4.6310 2.9471
20 1 10.0915 4.8602 3.5960
21 1 12.4688 4.5784 3.9842
22 1 11.6933 5.7406 2.0025
23 6 9.7274 1.3343 -0.8380
24 6 8.4152 0.5443 -0.8127
25 6 7.3049 -2.8691 -0.7643
26 6 7.3042 -2.8695 0.7665
27 6 2.3139 -1.0921 0.0060
28 8 1.9325 -2.3984 0.0126
29 1 -0.3633 -0.0004 -1.0276
30 1 -0.3633 0.8903 0.5135
31 1 -0.3634 -0.8896 0.5142
32 1 6.1200 0.2127 0.0018
33 1 9.4092 -1.3306 -0.4407
34 1 8.1975 0.2423 1.8780
35 1 9.1003 -1.2850 2.0283
36 1 11.1086 -0.2387 1.0908
37 1 10.5230 0.7514 2.4524
38 1 12.8504 2.1827 3.0444
39 1 10.4861 0.7654 -1.3755
40 1 9.5676 2.2924 -1.3326
41 1 8.1263 0.2861 -1.8316
42 1 7.6335 1.1510 -0.3557
43 1 6.3813 -3.1542 -1.2681
44 1 8.2257 -3.1646 -1.2671
45 1 8.2245 -3.1652 1.2701
46 1 6.3803 -3.1546 1.2698
47 1 1.8226 -2.7805 -0.8688
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001000123628.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:53:37
Heat of formation + Delta-G solvation = 46.226080 kcal
Electronic energy + Delta-G solvation = -29495.614698 eV
Core-core repulsion = 25488.884139 eV
Total energy + Delta-G solvation = -4006.730559 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 334.179 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-42.96806 -40.21825 -37.91733 -37.36394 -35.85887 -33.45559 -32.72910 -32.43816
-31.08039 -30.29312 -29.67093 -27.21827 -25.60889 -24.58489 -22.67337 -22.52466
-21.62187 -21.56255 -20.43934 -19.71640 -18.83364 -18.37334 -17.50817 -17.26875
-16.70089 -16.17252 -15.39481 -14.85545 -14.61130 -14.56734 -14.43158 -14.06589
-13.91007 -13.55054 -13.47004 -13.39749 -13.33941 -12.96488 -12.86618 -12.72842
-12.24435 -11.93992 -11.42859 -11.24278 -11.02940 -10.94132 -10.68443 -10.65709
-10.60959 -10.31386 -10.23126 -10.02554 -9.89314 -9.75724 -9.61464 -9.48556
-9.29385 -9.01815 -8.45403 -8.31916 -6.63646 -5.75692 -3.17417 1.30224
1.58847 2.41069 3.10124 3.26568 3.39732 3.45709 3.46808 3.95099
4.22615 4.27723 4.37957 4.52178 4.65960 4.90654 4.99811 5.01033
5.27030 5.30762 5.33470 5.39909 5.42515 5.48618 5.65815 5.77916
5.83214 5.84245 5.99513 6.05220 6.17585 6.25963 6.37042 6.52759
6.57101 6.57559 6.62625 6.71918 6.80003 6.81579 6.88868 6.99682
7.38716 7.43008 7.45127 7.70284 7.71948 7.82199 8.27895 8.48577
9.24818 9.88678 10.45453 11.32746
Molecular weight = 334.18amu
Principal moments of inertia in cm(-1)
A = 0.014305 B = 0.003045 C = 0.002660
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1956.869447 B = 9194.104315 C =10525.617507
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C -0.014 4.014
3 N -0.373 5.373
4 H 0.450 0.550
5 N -0.239 5.239
6 C -0.028 4.028
7 C 0.599 3.401
8 O -0.522 6.522
9 N -0.674 5.674
10 C 0.107 3.893
11 C -0.041 4.041
12 C -0.133 4.133
13 C 0.170 3.830
14 N -0.592 5.592
15 C -0.252 4.252
16 H 0.064 0.936
17 C 0.002 3.998
18 N -0.903 5.903
19 Si 0.901 3.099
20 H -0.284 1.284
21 H -0.291 1.291
22 H -0.283 1.283
23 C 0.146 3.854
24 C -0.127 4.127
25 C -0.179 4.179
26 C -0.176 4.176
27 C 0.046 3.954
28 O -0.451 6.451
29 H 0.079 0.921
30 H 0.072 0.928
31 H 0.089 0.911
32 H 0.412 0.588
33 H 0.079 0.921
34 H 0.054 0.946
35 H 0.051 0.949
36 H 0.017 0.983
37 H 0.087 0.913
38 H 0.254 0.746
39 H 0.018 0.982
40 H 0.053 0.947
41 H 0.052 0.948
42 H 0.056 0.944
43 H 0.104 0.896
44 H 0.092 0.908
45 H 0.094 0.906
46 H 0.106 0.894
47 H 0.386 0.614
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.435 -5.729 -7.176 24.241
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.139 4.139
3 N -0.090 5.090
4 H 0.296 0.704
5 N -0.077 5.077
6 C -0.190 4.190
7 C 0.383 3.617
8 O -0.397 6.397
9 N -0.325 5.325
10 C 0.020 3.980
11 C -0.060 4.060
12 C -0.172 4.172
13 C 0.045 3.955
14 N -0.315 5.315
15 C -0.381 4.381
16 H 0.082 0.918
17 C -0.197 4.197
18 N -0.547 5.547
19 Si 0.731 3.269
20 H -0.211 1.211
21 H -0.217 1.217
22 H -0.210 1.210
23 C 0.020 3.980
24 C -0.166 4.166
25 C -0.218 4.218
26 C -0.214 4.214
27 C -0.010 4.010
28 O -0.256 6.256
29 H 0.097 0.903
30 H 0.091 0.909
31 H 0.108 0.892
32 H 0.250 0.750
33 H 0.098 0.902
34 H 0.073 0.927
35 H 0.070 0.930
36 H 0.035 0.965
37 H 0.106 0.894
38 H 0.064 0.936
39 H 0.036 0.964
40 H 0.072 0.928
41 H 0.071 0.929
42 H 0.074 0.926
43 H 0.122 0.878
44 H 0.110 0.890
45 H 0.112 0.888
46 H 0.124 0.876
47 H 0.241 0.759
Dipole moment (debyes) X Y Z Total
from point charges -21.632 -5.627 -6.429 23.258
hybrid contribution -0.622 1.058 0.069 1.229
sum -22.254 -4.569 -6.361 23.592
Atomic orbital electron populations
1.20310 0.85967 1.04290 1.03344 1.21578 0.95444 0.87436 1.09483
1.43086 1.02823 1.09347 1.53764 0.70397 1.73681 1.01687 1.14195
1.18095 1.22475 0.95507 0.90003 1.10968 1.16794 0.81444 0.86495
0.76950 1.90771 1.86550 1.12432 1.49974 1.45289 1.03669 1.10811
1.72711 1.20977 0.85310 0.86017 1.05662 1.20776 0.91649 0.95381
0.98196 1.22249 1.01413 0.99634 0.93903 1.20792 0.90454 0.87144
0.97141 1.44052 1.78109 1.03917 1.05400 1.19138 1.17756 0.84354
1.16892 0.91815 1.25022 0.95618 0.97426 1.01609 1.70026 1.19953
1.33088 1.31657 0.86387 0.77151 0.83589 0.79745 1.21102 1.21669
1.20951 1.20879 0.92184 0.97045 0.87913 1.22036 1.00365 0.96123
0.98122 1.23445 1.03214 0.99916 0.95179 1.23365 1.03522 0.99740
0.94755 1.17764 0.88954 0.85085 1.09157 1.84898 1.88732 1.19110
1.32881 0.90272 0.90861 0.89241 0.75005 0.90248 0.92748 0.93016
0.96456 0.89441 0.93620 0.96427 0.92821 0.92894 0.92569 0.87774
0.89008 0.88753 0.87619 0.75950
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.36 10.44 36.00 0.38 0.01 16
2 C -0.01 -0.11 7.27 -81.70 -0.59 -0.71 16
3 N -0.37 -3.11 6.87 33.71 0.23 -2.88 16
4 H 0.45 2.01 8.96 -190.45 -1.71 0.31 16
5 N -0.24 -2.90 11.91 33.45 0.40 -2.50 16
6 C -0.03 -0.38 7.13 -82.69 -0.59 -0.97 16
7 C 0.60 9.30 7.52 -12.47 -0.09 9.20 16
8 O -0.52 -8.94 12.00 3.09 0.04 -8.91 16
9 N -0.67 -10.23 5.38 -48.64 -0.26 -10.49 16
10 C 0.11 1.67 2.48 -131.82 -0.33 1.34 16
11 C -0.04 -0.69 2.28 -90.58 -0.21 -0.89 16
12 C -0.13 -2.55 5.22 -26.61 -0.14 -2.69 16
13 C 0.17 4.05 5.31 -3.71 -0.02 4.03 16
14 N -0.59 -14.71 2.99 -172.33 -0.52 -15.23 16
15 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16
16 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16
17 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16
18 N -0.90 -26.28 11.19 55.49 0.62 -25.66 16
19 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16
20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
21 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16
22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
23 C 0.15 3.03 6.52 -3.72 -0.02 3.00 16
24 C -0.13 -2.17 4.83 -26.61 -0.13 -2.30 16
25 C -0.18 -2.63 9.37 -26.69 -0.25 -2.88 16
26 C -0.18 -2.70 8.91 -26.69 -0.24 -2.94 16
27 C 0.05 0.54 7.28 -39.12 -0.28 0.26 16
28 O -0.45 -5.02 13.20 -22.19 -0.29 -5.32 16
29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16
30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16
31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16
32 H 0.41 6.15 6.38 -40.82 -0.26 5.89 16
33 H 0.08 1.34 7.90 -51.93 -0.41 0.93 16
34 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16
35 H 0.05 0.92 7.25 -51.93 -0.38 0.55 16
36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
37 H 0.09 2.35 6.04 -51.93 -0.31 2.03 16
38 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16
39 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16
40 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16
41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16
42 H 0.06 0.97 6.50 -51.93 -0.34 0.63 16
43 H 0.10 1.62 6.37 -51.93 -0.33 1.29 16
44 H 0.09 1.22 8.05 -51.93 -0.42 0.81 16
45 H 0.09 1.37 7.60 -51.93 -0.39 0.98 16
46 H 0.11 1.78 6.37 -51.93 -0.33 1.44 16
47 H 0.39 2.64 9.07 45.56 0.41 3.06 16
LS Contribution 375.10 15.07 5.65 5.65
Total: -1.00 -34.00 375.10 -9.30 -43.29
By element:
Atomic # 1 Polarization: 15.30 SS G_CDS: -7.39 Total: 7.92 kcal
Atomic # 6 Polarization: 0.14 SS G_CDS: -2.75 Total: -2.61 kcal
Atomic # 7 Polarization: -57.22 SS G_CDS: 0.47 Total: -56.75 kcal
Atomic # 8 Polarization: -13.97 SS G_CDS: -0.26 Total: -14.22 kcal
Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -34.00 -9.30 -43.29 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001000123628.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.517 kcal
(2) G-P(sol) polarization free energy of solvation -33.995 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.521 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.291 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.226 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds