Wall clock time and date at job start Tue Mar 31 2020 18:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30450 * 125.98550 * 2 1 4 4 N 1.39934 * 108.89234 * 180.26247 * 3 2 1 5 5 C 1.46506 * 125.75182 * 179.72897 * 4 3 2 6 6 H 1.08997 * 110.45655 * 27.63525 * 5 4 3 7 7 C 1.54511 * 110.51178 * 265.02493 * 5 4 3 8 8 C 1.54477 * 104.06074 * 241.35674 * 7 5 4 9 9 O 1.44422 * 104.80802 * 23.97816 * 8 7 5 10 10 C 1.44426 * 105.27459 * 319.49130 * 9 8 7 11 11 C 1.34256 * 108.49401 * 359.75023 * 4 3 2 12 12 C 1.38044 * 107.41764 * 0.02562 * 11 4 3 13 13 C 1.47423 * 126.41561 * 179.97438 * 12 11 4 14 14 O 1.21605 * 120.00095 * 180.02562 * 13 12 11 15 15 N 1.34783 * 120.00082 * 0.02562 * 13 12 11 16 16 C 1.46502 * 119.99989 * 180.02562 * 15 13 12 17 17 H 1.09000 * 110.88593 * 37.42166 * 16 15 13 18 18 C 1.55405 * 111.07038 * 161.20904 * 16 15 13 19 19 C 1.54325 * 102.82616 * 153.48335 * 18 16 15 20 20 N 1.47018 * 107.40412 * 337.97548 * 19 18 16 21 21 C 1.36936 * 125.64899 * 178.89496 * 20 19 18 22 22 H 1.08004 * 120.00261 * 179.97438 * 21 20 19 23 23 C 1.38814 * 120.00145 * 359.97438 * 21 20 19 24 24 N 1.31617 * 119.99550 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00112 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47257 * 90.00190 * 25 23 21 27 27 H 1.48507 * 109.47158 * 210.00140 * 25 23 21 28 28 H 1.48503 * 109.47321 * 329.99764 * 25 23 21 29 29 C 1.47426 * 108.70517 * 358.86539 * 20 19 18 30 30 H 1.09010 * 109.46773 * 270.14625 * 1 2 3 31 31 H 1.08997 * 109.47201 * 30.14266 * 1 2 3 32 32 H 1.08996 * 109.47044 * 150.14734 * 1 2 3 33 33 H 1.08997 * 110.50840 * 359.97438 * 7 5 4 34 34 H 1.08998 * 110.50887 * 122.57371 * 7 5 4 35 35 H 1.09004 * 110.37207 * 142.81386 * 8 7 5 36 36 H 1.09003 * 110.37074 * 265.14335 * 8 7 5 37 37 H 1.09003 * 110.37125 * 281.67645 * 10 9 8 38 38 H 1.08998 * 110.37210 * 159.34095 * 10 9 8 39 39 H 1.07999 * 126.29104 * 179.97438 * 11 4 3 40 40 H 0.96999 * 119.99919 * 0.02562 * 15 13 12 41 41 H 1.09000 * 110.69068 * 35.19593 * 18 16 15 42 42 H 1.09002 * 110.85092 * 271.84587 * 18 16 15 43 43 H 1.09002 * 109.88192 * 218.47989 * 19 18 16 44 44 H 1.09000 * 109.88128 * 97.46841 * 19 18 16 45 45 H 0.97004 * 119.99606 * 179.97438 * 24 23 21 46 46 H 1.08999 * 110.36956 * 142.96999 * 29 20 19 47 47 H 1.09001 * 110.36709 * 265.18192 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0556 0.0000 4 7 3.6111 0.6443 -0.0061 5 6 4.7787 1.5291 -0.0136 6 1 4.5383 2.4811 0.4595 7 6 5.2786 1.7535 -1.4583 8 6 6.7162 1.1882 -1.4500 9 8 6.7319 0.2352 -0.3649 10 6 5.9734 0.8548 0.6966 11 6 3.6439 -0.6979 -0.0042 12 6 2.3373 -1.1432 0.0023 13 6 1.8916 -2.5484 0.0059 14 8 0.7040 -2.8097 0.0113 15 7 2.8005 -3.5437 0.0032 16 6 2.3576 -4.9402 0.0061 17 1 1.4667 -5.0666 -0.6091 18 6 3.4954 -5.8882 -0.4646 19 6 3.1390 -7.2210 0.2269 20 7 2.2811 -6.9036 1.3779 21 6 1.7322 -7.8153 2.2396 22 1 1.1133 -7.4797 3.0587 23 6 1.9712 -9.1709 2.0606 24 7 2.7258 -9.5799 1.0628 25 14 1.2231 -10.4146 3.2366 26 1 -0.1079 -10.8359 2.7305 27 1 2.1127 -11.5995 3.3357 28 1 1.0698 -9.7971 4.5784 29 6 2.1102 -5.4411 1.4510 30 1 -0.3633 0.0026 1.0278 31 1 -0.3633 0.8887 -0.5160 32 1 -0.3633 -0.8913 -0.5115 33 1 4.6574 1.2057 -2.1668 34 1 5.2853 2.8164 -1.6994 35 1 6.9338 0.6906 -2.3952 36 1 7.4364 1.9853 -1.2653 37 1 6.5796 1.6008 1.2105 38 1 5.6203 0.1012 1.4004 39 1 4.5298 -1.3156 -0.0081 40 1 3.7478 -3.3354 -0.0007 41 1 4.4651 -5.5245 -0.1246 42 1 3.4830 -6.0008 -1.5487 43 1 4.0481 -7.7166 0.5677 44 1 2.6028 -7.8673 -0.4680 45 1 2.8932 -10.5272 0.9378 46 1 1.0980 -5.1929 1.7706 47 1 2.8400 -5.0076 2.1348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014430167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:35 Heat of formation + Delta-G solvation = 27.934516 kcal Electronic energy + Delta-G solvation = -28898.300106 eV Core-core repulsion = 24890.776365 eV Total energy + Delta-G solvation = -4007.523740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.82133 -39.84539 -38.99092 -37.03120 -34.41746 -33.92220 -32.06862 -31.67015 -30.37512 -29.85372 -29.02750 -27.46044 -26.84962 -24.66851 -23.98276 -22.97816 -21.45894 -20.60995 -20.32393 -19.76945 -19.66445 -18.14054 -17.07673 -16.79612 -16.45332 -16.20070 -15.78982 -15.55709 -15.03897 -14.68093 -14.53672 -14.18936 -13.98426 -13.75962 -13.47635 -13.30737 -12.95948 -12.78204 -12.39851 -12.36275 -12.28027 -12.24130 -12.10368 -11.95308 -11.76149 -11.73597 -11.01181 -10.93748 -10.83686 -10.67431 -10.52678 -10.29148 -10.06051 -9.84560 -9.68135 -9.54307 -9.47398 -8.87593 -8.58796 -8.51263 -6.78207 -5.66534 -2.99527 1.33850 1.94895 2.10187 3.18035 3.44668 3.48324 3.50597 3.53785 3.62178 3.78877 3.87749 4.24841 4.30461 4.38036 4.46045 4.56257 4.57827 4.85436 4.93677 5.05217 5.07502 5.13346 5.23416 5.31895 5.35863 5.41747 5.50721 5.68081 5.68389 5.80856 5.84095 5.88023 5.95945 6.02614 6.26368 6.39876 6.44900 6.47638 6.57542 6.70452 6.80100 7.08009 7.41910 7.59212 7.62788 7.82935 7.90036 8.30143 8.58035 9.27180 9.87165 10.52485 11.45478 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016953 B = 0.002537 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.242216 B =11032.824392 C =12060.796397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.134 3.866 3 N -0.305 5.305 4 N -0.356 5.356 5 C 0.126 3.874 6 H 0.121 0.879 7 C -0.167 4.167 8 C 0.044 3.956 9 O -0.366 6.366 10 C 0.033 3.967 11 C 0.103 3.897 12 C -0.280 4.280 13 C 0.590 3.410 14 O -0.539 6.539 15 N -0.716 5.716 16 C 0.131 3.869 17 H 0.094 0.906 18 C -0.149 4.149 19 C 0.179 3.821 20 N -0.604 5.604 21 C -0.224 4.224 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.924 5.924 25 Si 0.913 3.087 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.130 3.870 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.183 0.817 40 H 0.393 0.607 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.049 0.951 45 H 0.252 0.748 46 H 0.044 0.956 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.822 26.438 -5.911 28.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.033 4.033 3 N -0.126 5.126 4 N -0.135 5.135 5 C 0.023 3.977 6 H 0.139 0.861 7 C -0.206 4.206 8 C -0.033 4.033 9 O -0.284 6.284 10 C -0.045 4.045 11 C -0.047 4.047 12 C -0.295 4.295 13 C 0.377 3.623 14 O -0.417 6.417 15 N -0.366 5.366 16 C 0.026 3.974 17 H 0.112 0.888 18 C -0.188 4.188 19 C 0.054 3.946 20 N -0.331 5.331 21 C -0.352 4.352 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.572 5.572 25 Si 0.743 3.257 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.002 3.998 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.200 0.800 40 H 0.226 0.774 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.226 27.158 -5.871 28.977 hybrid contribution 0.246 -1.195 0.586 1.353 sum 8.472 25.963 -5.285 27.817 Atomic orbital electron populations 1.20358 0.85560 1.04007 1.03659 1.22501 0.97271 0.88730 0.94839 1.77171 0.85690 1.22648 1.27052 1.48374 1.05328 1.04257 1.55503 1.22764 0.82922 0.94246 0.97731 0.86093 1.23471 0.97569 1.03664 0.95890 1.23521 0.95230 0.92704 0.91852 1.89237 1.73817 1.40556 1.24773 1.23880 0.90354 0.98928 0.91318 1.23087 0.98975 0.85348 0.97295 1.20384 0.91915 0.94858 1.22357 1.17216 0.85815 0.83294 0.75948 1.90751 1.16227 1.84129 1.50577 1.45858 1.08993 1.06311 1.75397 1.22309 0.98244 0.77964 0.98875 0.88790 1.23214 0.96865 0.98399 1.00310 1.21133 0.94995 0.89884 0.88586 1.44396 1.57679 0.99505 1.31525 1.19080 1.24216 0.86378 1.05564 0.90399 1.24797 1.00284 0.96833 0.98661 1.69951 1.41887 1.14034 1.31351 0.86099 0.78365 0.81011 0.80188 1.21585 1.21729 1.20721 1.21822 0.98666 0.86044 0.93222 0.90146 0.91276 0.88386 0.89355 0.88655 0.88182 0.91355 0.89351 0.87568 0.80035 0.77376 0.92096 0.91582 0.93664 0.93254 0.93800 0.93765 0.96393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 9.92 36.01 0.36 -0.56 16 2 C 0.13 1.79 7.26 -82.02 -0.60 1.20 16 3 N -0.30 -3.79 12.50 33.90 0.42 -3.37 16 4 N -0.36 -3.51 3.48 -52.79 -0.18 -3.70 16 5 C 0.13 0.78 4.24 -66.36 -0.28 0.50 16 6 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 7 C -0.17 -0.84 6.88 -25.16 -0.17 -1.01 16 8 C 0.04 0.20 7.63 37.93 0.29 0.49 16 9 O -0.37 -2.59 11.64 -35.23 -0.41 -3.00 16 10 C 0.03 0.18 6.58 37.93 0.25 0.43 16 11 C 0.10 1.08 9.73 -16.56 -0.16 0.92 16 12 C -0.28 -3.77 6.13 -105.07 -0.64 -4.42 16 13 C 0.59 9.50 7.81 -12.52 -0.10 9.40 16 14 O -0.54 -10.49 14.66 5.27 0.08 -10.41 16 15 N -0.72 -10.71 5.22 -52.67 -0.27 -10.99 16 16 C 0.13 2.44 3.31 -65.64 -0.22 2.22 16 17 H 0.09 1.92 7.73 -51.93 -0.40 1.52 16 18 C -0.15 -2.70 6.60 -24.76 -0.16 -2.87 16 19 C 0.18 4.35 5.37 -3.07 -0.02 4.34 16 20 N -0.60 -15.91 3.39 -170.07 -0.58 -16.49 16 21 C -0.22 -6.44 10.28 -15.06 -0.15 -6.59 16 22 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 23 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 24 N -0.92 -27.43 10.31 55.49 0.57 -26.86 16 25 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 C 0.13 2.88 6.93 -2.53 -0.02 2.86 16 30 H 0.08 0.91 8.14 -51.92 -0.42 0.48 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.10 1.31 6.56 -51.93 -0.34 0.97 16 33 H 0.09 0.60 7.96 -51.93 -0.41 0.19 16 34 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.11 0.61 7.26 -51.93 -0.38 0.24 16 39 H 0.18 1.46 7.07 -52.49 -0.37 1.09 16 40 H 0.39 4.66 7.45 -40.82 -0.30 4.36 16 41 H 0.06 0.98 8.00 -51.93 -0.42 0.57 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 1.20 7.51 -51.93 -0.39 0.81 16 44 H 0.05 1.32 7.37 -51.93 -0.38 0.94 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 380.71 15.07 5.74 5.74 Total: -1.00 -35.33 380.71 -8.55 -43.88 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.17 Total: 1.12 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -1.72 Total: 6.52 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -0.04 Total: -61.40 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.33 Total: -13.41 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.33 -8.55 -43.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014430167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.817 kcal (2) G-P(sol) polarization free energy of solvation -35.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds