Wall clock time and date at job start Tue Mar 31 2020 18:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30454 * 125.98511 * 2 1 4 4 N 1.39937 * 108.89727 * 180.02562 * 3 2 1 5 5 C 1.46500 * 125.75117 * 180.02562 * 4 3 2 6 6 H 1.08999 * 110.43623 * 23.88422 * 5 4 3 7 7 C 1.54812 * 110.48685 * 261.19465 * 5 4 3 8 8 C 1.54989 * 102.09532 * 220.44786 * 7 5 4 9 9 O 1.44378 * 103.49169 * 37.02196 * 8 7 5 10 10 C 1.43747 * 106.97539 * 319.94082 * 9 8 7 11 11 C 1.34259 * 108.49289 * 359.72923 * 4 3 2 12 12 C 1.38047 * 107.41313 * 0.43161 * 11 4 3 13 13 C 1.47432 * 126.41413 * 179.83729 * 12 11 4 14 14 O 1.21603 * 120.00137 * 179.68529 * 13 12 11 15 15 N 1.34777 * 119.99549 * 359.95721 * 13 12 11 16 16 C 1.47021 * 125.65027 * 359.42310 * 15 13 12 17 17 C 1.54339 * 107.26633 * 178.84806 * 16 15 13 18 18 C 1.55167 * 103.01929 * 338.13866 * 17 16 15 19 19 H 1.08996 * 111.03388 * 277.22005 * 18 17 16 20 20 N 1.46493 * 111.00124 * 153.38155 * 18 17 16 21 21 C 1.36941 * 119.99610 * 161.35170 * 20 18 17 22 22 H 1.07997 * 119.99942 * 359.97438 * 21 20 18 23 23 C 1.38816 * 120.00011 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99949 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99972 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.46846 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.46655 * 119.99582 * 25 23 21 28 28 H 1.48497 * 109.46688 * 239.99304 * 25 23 21 29 29 C 1.47426 * 125.64501 * 179.72500 * 15 13 12 30 30 H 1.09002 * 109.47029 * 269.96637 * 1 2 3 31 31 H 1.08997 * 109.47707 * 29.97179 * 1 2 3 32 32 H 1.08997 * 109.46773 * 149.97858 * 1 2 3 33 33 H 1.09002 * 110.90928 * 338.64582 * 7 5 4 34 34 H 1.09004 * 110.90604 * 102.24521 * 7 5 4 35 35 H 1.09010 * 110.61459 * 278.52338 * 8 7 5 36 36 H 1.08997 * 110.62561 * 155.52470 * 8 7 5 37 37 H 1.08998 * 109.87880 * 267.08941 * 10 9 8 38 38 H 1.08999 * 109.87900 * 145.93762 * 10 9 8 39 39 H 1.07998 * 126.29414 * 180.26688 * 11 4 3 40 40 H 1.09000 * 109.88280 * 298.39043 * 16 15 13 41 41 H 1.09001 * 109.88287 * 59.55708 * 16 15 13 42 42 H 1.09000 * 110.85247 * 219.67418 * 17 16 15 43 43 H 1.08994 * 110.67130 * 96.51663 * 17 16 15 44 44 H 0.96996 * 120.00927 * 341.35139 * 20 18 17 45 45 H 0.96995 * 120.00177 * 180.02562 * 24 23 21 46 46 H 1.09003 * 110.37118 * 322.92986 * 29 15 13 47 47 H 1.08998 * 110.36604 * 85.15025 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6111 0.6444 -0.0006 5 6 4.7786 1.5293 -0.0003 6 1 4.5178 2.5032 0.4140 7 6 5.3442 1.6807 -1.4334 8 6 6.8735 1.6396 -1.1850 9 8 7.0164 0.6719 -0.1231 10 6 5.9352 0.8960 0.7972 11 6 3.6440 -0.6978 0.0051 12 6 2.3373 -1.1431 -0.0007 13 6 1.8917 -2.5484 -0.0009 14 8 0.7041 -2.8097 -0.0005 15 7 2.8007 -3.5436 0.0040 16 6 4.2606 -3.3706 -0.0021 17 6 4.8891 -4.7797 0.0366 18 6 3.7504 -5.6542 0.6252 19 1 3.7323 -5.5924 1.7133 20 7 3.8747 -7.0452 0.1830 21 6 3.2283 -8.0409 0.8656 22 1 2.6274 -7.8008 1.7302 23 6 3.3465 -9.3592 0.4469 24 7 4.0793 -9.6519 -0.6065 25 14 2.4653 -10.7176 1.3785 26 1 1.7135 -10.1302 2.5164 27 1 1.5211 -11.4113 0.4662 28 1 3.4614 -11.6910 1.8936 29 6 2.4955 -4.9859 0.0102 30 1 -0.3633 -0.0006 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 5.0303 0.8498 -2.0653 34 1 5.0465 2.6339 -1.8704 35 1 7.2368 2.6165 -0.8656 36 1 7.3991 1.3074 -2.0803 37 1 6.2558 1.5748 1.5875 38 1 5.6128 -0.0518 1.2282 39 1 4.5299 -1.3155 0.0102 40 1 4.5684 -2.8501 -0.9091 41 1 4.5705 -2.8042 0.8761 42 1 5.7637 -4.7967 0.6868 43 1 5.1505 -5.1121 -0.9679 44 1 4.4147 -7.2610 -0.5933 45 1 4.1616 -10.5730 -0.8993 46 1 1.6189 -5.1856 0.6265 47 1 2.3331 -5.3436 -1.0066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018848091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:51 Heat of formation + Delta-G solvation = 27.194864 kcal Electronic energy + Delta-G solvation = -29159.273923 eV Core-core repulsion = 25151.718109 eV Total energy + Delta-G solvation = -4007.555814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.86204 -39.88711 -39.19595 -37.13857 -34.46805 -34.17303 -31.98882 -31.54195 -30.40826 -29.90051 -29.64270 -27.57290 -27.08978 -24.79583 -23.64531 -23.12805 -22.31541 -20.95694 -20.61948 -19.89453 -19.37676 -17.62111 -17.17149 -16.96844 -16.46715 -16.17375 -15.98198 -15.49553 -15.26612 -14.90227 -14.42247 -14.34570 -13.91346 -13.71128 -13.48331 -13.34687 -13.17885 -12.97737 -12.77216 -12.58480 -12.43603 -12.27763 -12.16693 -12.07676 -11.97951 -11.67162 -11.38755 -11.11137 -10.98703 -10.79924 -10.72039 -10.41278 -10.31925 -10.00922 -9.78484 -9.59844 -9.49599 -9.00965 -8.83231 -8.27739 -7.07113 -5.83310 -3.13899 1.32570 1.92883 2.08245 3.18285 3.29158 3.42177 3.48800 3.50528 3.57152 3.77126 3.92184 4.23058 4.27001 4.36849 4.48310 4.53714 4.55934 4.85113 4.87731 4.96553 4.97692 5.07104 5.11984 5.15432 5.16285 5.30127 5.34148 5.36396 5.47391 5.65548 5.69208 5.74780 5.82993 5.92479 5.94291 6.12172 6.12236 6.25895 6.38057 6.42696 6.53037 6.58303 6.68081 6.90536 7.41306 7.67722 7.85364 8.34288 8.50129 9.46592 9.99507 10.34355 11.38840 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.002760 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.256275 B =10143.224792 C =11603.840956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.133 3.867 3 N -0.303 5.303 4 N -0.358 5.358 5 C 0.126 3.874 6 H 0.121 0.879 7 C -0.167 4.167 8 C 0.047 3.953 9 O -0.366 6.366 10 C 0.035 3.965 11 C 0.085 3.915 12 C -0.274 4.274 13 C 0.602 3.398 14 O -0.545 6.545 15 N -0.611 5.611 16 C 0.099 3.901 17 C -0.140 4.140 18 C 0.172 3.828 19 H 0.065 0.935 20 N -0.712 5.712 21 C -0.246 4.246 22 H 0.073 0.927 23 C -0.009 4.009 24 N -0.930 5.930 25 Si 0.908 3.092 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.291 1.291 29 C 0.085 3.915 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.194 0.806 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.072 0.928 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.584 27.090 -0.290 27.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.034 4.034 3 N -0.124 5.124 4 N -0.136 5.136 5 C 0.024 3.976 6 H 0.139 0.861 7 C -0.206 4.206 8 C -0.030 4.030 9 O -0.284 6.284 10 C -0.043 4.043 11 C -0.064 4.064 12 C -0.289 4.289 13 C 0.391 3.609 14 O -0.423 6.423 15 N -0.344 5.344 16 C -0.025 4.025 17 C -0.179 4.179 18 C 0.060 3.940 19 H 0.082 0.918 20 N -0.352 5.352 21 C -0.377 4.377 22 H 0.091 0.909 23 C -0.206 4.206 24 N -0.578 5.578 25 Si 0.739 3.261 26 H -0.204 1.204 27 H -0.217 1.217 28 H -0.218 1.218 29 C -0.040 4.040 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.210 0.790 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.222 0.778 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.136 28.068 -0.147 28.535 hybrid contribution -0.292 -1.473 0.096 1.505 sum 4.844 26.595 -0.051 27.033 Atomic orbital electron populations 1.20348 0.85562 1.04024 1.03593 1.22489 0.97259 0.88677 0.95014 1.77148 0.85756 1.22681 1.26838 1.48385 1.05315 1.04321 1.55618 1.22787 0.82809 0.94464 0.97572 0.86066 1.23652 0.96232 1.04946 0.95744 1.23627 0.94488 0.93345 0.91511 1.88992 1.47579 1.55849 1.36006 1.23613 0.85697 1.02424 0.92606 1.23856 0.99821 0.85199 0.97546 1.20314 0.91923 0.94660 1.22016 1.16867 0.84867 0.82748 0.76375 1.90733 1.15833 1.83921 1.51861 1.48344 1.05968 1.07428 1.72684 1.22250 0.81141 0.98955 1.00130 1.22918 0.99132 0.93040 1.02804 1.21316 0.90382 0.85351 0.96983 0.91759 1.42306 1.58563 0.99423 1.34923 1.19305 1.23299 0.86672 1.08436 0.90856 1.24767 1.00287 0.97373 0.98134 1.69666 1.43404 1.18392 1.26336 0.86103 0.78854 0.82170 0.78988 1.20400 1.21746 1.21807 1.23394 1.01740 0.76905 1.01956 0.90194 0.91207 0.88439 0.89248 0.88606 0.91246 0.87848 0.89828 0.88458 0.78976 0.91787 0.91811 0.90069 0.90289 0.77850 0.93415 0.90936 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 9.92 36.00 0.36 -0.56 16 2 C 0.13 1.83 7.26 -82.02 -0.60 1.23 16 3 N -0.30 -3.87 12.50 33.89 0.42 -3.45 16 4 N -0.36 -3.70 3.53 -52.83 -0.19 -3.89 16 5 C 0.13 0.85 4.14 -66.40 -0.27 0.58 16 6 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 7 C -0.17 -0.93 6.88 -24.73 -0.17 -1.10 16 8 C 0.05 0.23 7.72 38.21 0.29 0.52 16 9 O -0.37 -2.74 11.52 -35.23 -0.41 -3.15 16 10 C 0.03 0.21 7.18 37.73 0.27 0.48 16 11 C 0.09 0.95 8.64 -16.56 -0.14 0.81 16 12 C -0.27 -3.90 6.10 -105.07 -0.64 -4.54 16 13 C 0.60 10.25 7.85 -12.52 -0.10 10.15 16 14 O -0.54 -10.89 15.17 5.27 0.08 -10.81 16 15 N -0.61 -9.85 3.33 -171.77 -0.57 -10.42 16 16 C 0.10 1.23 4.99 -3.06 -0.02 1.22 16 17 C -0.14 -2.02 6.57 -24.88 -0.16 -2.18 16 18 C 0.17 3.25 3.69 -65.78 -0.24 3.01 16 19 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 20 N -0.71 -17.07 5.28 -51.35 -0.27 -17.34 16 21 C -0.25 -6.65 9.98 -15.06 -0.15 -6.81 16 22 H 0.07 1.95 7.83 -52.49 -0.41 1.53 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 24 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 25 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 C 0.09 1.61 6.60 -2.53 -0.02 1.59 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.32 6.55 -51.93 -0.34 0.98 16 33 H 0.09 0.64 8.06 -51.93 -0.42 0.22 16 34 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.22 8.14 -51.92 -0.42 -0.20 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.10 0.64 6.37 -51.93 -0.33 0.31 16 39 H 0.19 1.74 3.80 -52.49 -0.20 1.54 16 40 H 0.06 0.69 7.06 -51.93 -0.37 0.32 16 41 H 0.06 0.66 6.79 -51.93 -0.35 0.31 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.08 1.16 7.99 -51.93 -0.42 0.75 16 44 H 0.39 9.77 7.71 -40.82 -0.31 9.46 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.07 1.50 8.04 -51.93 -0.42 1.08 16 47 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 378.20 15.07 5.70 5.70 Total: -1.00 -33.84 378.20 -8.14 -41.99 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.93 Total: 6.89 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -1.68 Total: 4.06 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: 0.12 Total: -61.80 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.33 Total: -13.95 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.84 -8.14 -41.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018848091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.181 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds