Wall clock time and date at job start Tue Mar 31 2020 18:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30454 * 125.98511 * 2 1 4 4 N 1.39937 * 108.89727 * 180.02562 * 3 2 1 5 5 C 1.46500 * 125.75117 * 180.02562 * 4 3 2 6 6 H 1.08999 * 110.43623 * 23.88422 * 5 4 3 7 7 C 1.54812 * 110.48685 * 261.19465 * 5 4 3 8 8 C 1.54989 * 102.09532 * 220.44786 * 7 5 4 9 9 O 1.44378 * 103.49169 * 37.02196 * 8 7 5 10 10 C 1.43747 * 106.97539 * 319.94082 * 9 8 7 11 11 C 1.34259 * 108.49289 * 359.72923 * 4 3 2 12 12 C 1.38047 * 107.41313 * 0.43161 * 11 4 3 13 13 C 1.47432 * 126.41413 * 179.83729 * 12 11 4 14 14 O 1.21603 * 120.00137 * 179.68529 * 13 12 11 15 15 N 1.34777 * 119.99549 * 359.95721 * 13 12 11 16 16 C 1.47021 * 125.65027 * 359.42310 * 15 13 12 17 17 C 1.54339 * 107.26633 * 178.84806 * 16 15 13 18 18 C 1.55167 * 103.01929 * 338.13866 * 17 16 15 19 19 H 1.08996 * 111.03388 * 277.22005 * 18 17 16 20 20 N 1.46493 * 111.00124 * 153.38155 * 18 17 16 21 21 C 1.36941 * 119.99610 * 161.35170 * 20 18 17 22 22 H 1.07997 * 119.99942 * 359.97438 * 21 20 18 23 23 C 1.38816 * 120.00011 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99949 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99972 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.46846 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.46655 * 119.99582 * 25 23 21 28 28 H 1.48497 * 109.46688 * 239.99304 * 25 23 21 29 29 C 1.47426 * 125.64501 * 179.72500 * 15 13 12 30 30 H 1.09002 * 109.47029 * 269.96637 * 1 2 3 31 31 H 1.08997 * 109.47707 * 29.97179 * 1 2 3 32 32 H 1.08997 * 109.46773 * 149.97858 * 1 2 3 33 33 H 1.09002 * 110.90928 * 338.64582 * 7 5 4 34 34 H 1.09004 * 110.90604 * 102.24521 * 7 5 4 35 35 H 1.09010 * 110.61459 * 278.52338 * 8 7 5 36 36 H 1.08997 * 110.62561 * 155.52470 * 8 7 5 37 37 H 1.08998 * 109.87880 * 267.08941 * 10 9 8 38 38 H 1.08999 * 109.87900 * 145.93762 * 10 9 8 39 39 H 1.07998 * 126.29414 * 180.26688 * 11 4 3 40 40 H 1.09000 * 109.88280 * 298.39043 * 16 15 13 41 41 H 1.09001 * 109.88287 * 59.55708 * 16 15 13 42 42 H 1.09000 * 110.85247 * 219.67418 * 17 16 15 43 43 H 1.08994 * 110.67130 * 96.51663 * 17 16 15 44 44 H 0.96996 * 120.00927 * 341.35139 * 20 18 17 45 45 H 0.96995 * 120.00177 * 180.02562 * 24 23 21 46 46 H 1.09003 * 110.37118 * 322.92986 * 29 15 13 47 47 H 1.08998 * 110.36604 * 85.15025 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6111 0.6444 -0.0006 5 6 4.7786 1.5293 -0.0003 6 1 4.5178 2.5032 0.4140 7 6 5.3442 1.6807 -1.4334 8 6 6.8735 1.6396 -1.1850 9 8 7.0164 0.6719 -0.1231 10 6 5.9352 0.8960 0.7972 11 6 3.6440 -0.6978 0.0051 12 6 2.3373 -1.1431 -0.0007 13 6 1.8917 -2.5484 -0.0009 14 8 0.7041 -2.8097 -0.0005 15 7 2.8007 -3.5436 0.0040 16 6 4.2606 -3.3706 -0.0021 17 6 4.8891 -4.7797 0.0366 18 6 3.7504 -5.6542 0.6252 19 1 3.7323 -5.5924 1.7133 20 7 3.8747 -7.0452 0.1830 21 6 3.2283 -8.0409 0.8656 22 1 2.6274 -7.8008 1.7302 23 6 3.3465 -9.3592 0.4469 24 7 4.0793 -9.6519 -0.6065 25 14 2.4653 -10.7176 1.3785 26 1 1.7135 -10.1302 2.5164 27 1 1.5211 -11.4113 0.4662 28 1 3.4614 -11.6910 1.8936 29 6 2.4955 -4.9859 0.0102 30 1 -0.3633 -0.0006 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5142 33 1 5.0303 0.8498 -2.0653 34 1 5.0465 2.6339 -1.8704 35 1 7.2368 2.6165 -0.8656 36 1 7.3991 1.3074 -2.0803 37 1 6.2558 1.5748 1.5875 38 1 5.6128 -0.0518 1.2282 39 1 4.5299 -1.3155 0.0102 40 1 4.5684 -2.8501 -0.9091 41 1 4.5705 -2.8042 0.8761 42 1 5.7637 -4.7967 0.6868 43 1 5.1505 -5.1121 -0.9679 44 1 4.4147 -7.2610 -0.5933 45 1 4.1616 -10.5730 -0.8993 46 1 1.6189 -5.1856 0.6265 47 1 2.3331 -5.3436 -1.0066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018848091.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:50 Heat of formation + Delta-G solvation = 3.169981 kcal Electronic energy + Delta-G solvation = -29160.315720 eV Core-core repulsion = 25151.718109 eV Total energy + Delta-G solvation = -4008.597611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.76519 -40.80439 -40.10609 -38.54501 -35.98683 -35.17978 -33.53251 -32.41015 -31.60394 -31.08914 -30.42477 -28.93423 -28.05593 -26.18830 -25.07964 -23.84831 -23.17640 -22.08566 -21.62167 -21.19408 -20.34418 -19.33684 -18.25385 -17.76283 -17.45656 -17.23692 -16.78608 -16.50166 -16.38528 -16.08406 -15.64382 -15.43532 -15.24620 -15.07533 -14.74426 -14.34075 -14.24897 -14.02912 -13.86719 -13.75035 -13.69296 -13.24982 -13.07098 -13.01555 -12.89002 -12.70175 -12.54857 -12.44721 -12.30914 -12.10866 -12.04982 -11.92936 -11.74237 -11.59621 -11.04160 -10.89356 -10.85613 -10.38537 -9.89079 -9.55989 -9.06339 -7.96808 -5.26337 0.38323 1.01324 1.15982 1.47774 1.49249 1.58586 2.01153 2.35580 2.56119 2.76458 3.22391 3.34263 3.36037 3.49225 3.61884 3.64835 3.73585 3.81285 3.93083 3.99893 4.15105 4.19074 4.23475 4.24849 4.35334 4.37470 4.52436 4.55454 4.61027 4.62119 4.73241 4.75916 4.81752 4.85912 4.89920 4.93392 4.95263 5.00288 5.20356 5.26246 5.37961 5.45300 5.54119 5.73348 5.76966 6.25556 6.43807 6.60508 7.19390 7.32958 8.04332 8.28556 9.26077 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.002760 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.256275 B =10143.224792 C =11603.840956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.119 3.881 3 N -0.312 5.312 4 N -0.346 5.346 5 C 0.117 3.883 6 H 0.137 0.863 7 C -0.163 4.163 8 C 0.048 3.952 9 O -0.387 6.387 10 C 0.036 3.964 11 C 0.108 3.892 12 C -0.304 4.304 13 C 0.598 3.402 14 O -0.587 6.587 15 N -0.611 5.611 16 C 0.099 3.901 17 C -0.127 4.127 18 C 0.166 3.834 19 H 0.063 0.937 20 N -0.723 5.723 21 C -0.245 4.245 22 H 0.074 0.926 23 C -0.069 4.069 24 N -0.964 5.964 25 Si 0.968 3.032 26 H -0.269 1.269 27 H -0.295 1.295 28 H -0.290 1.290 29 C 0.097 3.903 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.217 0.783 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.379 0.621 45 H 0.252 0.748 46 H 0.045 0.955 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.530 29.679 0.400 30.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.048 4.048 3 N -0.134 5.134 4 N -0.124 5.124 5 C 0.016 3.984 6 H 0.155 0.845 7 C -0.201 4.201 8 C -0.028 4.028 9 O -0.306 6.306 10 C -0.042 4.042 11 C -0.044 4.044 12 C -0.319 4.319 13 C 0.389 3.611 14 O -0.469 6.469 15 N -0.344 5.344 16 C -0.023 4.023 17 C -0.166 4.166 18 C 0.055 3.945 19 H 0.081 0.919 20 N -0.362 5.362 21 C -0.377 4.377 22 H 0.092 0.908 23 C -0.261 4.261 24 N -0.614 5.614 25 Si 0.798 3.202 26 H -0.193 1.193 27 H -0.223 1.223 28 H -0.217 1.217 29 C -0.030 4.030 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.112 0.888 39 H 0.233 0.767 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.124 0.876 43 H 0.095 0.905 44 H 0.212 0.788 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.108 30.738 0.563 31.554 hybrid contribution -0.847 -2.121 -0.128 2.288 sum 6.261 28.617 0.435 29.297 Atomic orbital electron populations 1.20303 0.85249 1.03816 1.03845 1.22685 0.97928 0.88828 0.95353 1.77112 0.86788 1.22404 1.27080 1.48724 1.05480 1.04573 1.53599 1.23218 0.81730 0.94557 0.98871 0.84482 1.23633 0.96802 1.05084 0.94587 1.23776 0.93814 0.93912 0.91332 1.88972 1.47929 1.56894 1.36781 1.23678 0.85082 1.02712 0.92691 1.24036 0.99234 0.85747 0.95359 1.20106 0.93544 0.93000 1.25226 1.17314 0.84381 0.83903 0.75498 1.90703 1.17670 1.84694 1.53823 1.48324 1.07693 1.05827 1.72537 1.22509 0.78470 0.98353 1.02971 1.22853 0.98215 0.92714 1.02772 1.21470 0.92344 0.83680 0.97009 0.91866 1.42424 1.58194 1.01042 1.34530 1.19621 1.22405 0.87562 1.08066 0.90837 1.25501 1.01739 0.99547 0.99343 1.69795 1.45253 1.18407 1.27982 0.85150 0.77669 0.79474 0.77936 1.19332 1.22269 1.21692 1.22953 1.00748 0.79235 1.00026 0.89726 0.89376 0.90559 0.90804 0.87194 0.89242 0.87143 0.87808 0.88802 0.76660 0.89100 0.88629 0.87631 0.90535 0.78829 0.93892 0.93616 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.78 9.92 71.23 0.71 -1.07 16 2 C 0.12 3.18 7.26 43.51 0.32 3.50 16 3 N -0.31 -7.40 12.50 -46.68 -0.58 -7.98 16 4 N -0.35 -6.21 3.53 -321.06 -1.13 -7.35 16 5 C 0.12 1.18 4.14 45.98 0.19 1.37 16 6 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 7 C -0.16 -1.28 6.88 31.89 0.22 -1.06 16 8 C 0.05 0.29 7.72 72.66 0.56 0.85 16 9 O -0.39 -4.42 11.52 -148.98 -1.72 -6.14 16 10 C 0.04 0.31 7.18 72.35 0.52 0.83 16 11 C 0.11 2.11 8.64 84.28 0.73 2.84 16 12 C -0.30 -8.33 6.10 -20.15 -0.12 -8.45 16 13 C 0.60 20.49 7.85 86.66 0.68 21.17 16 14 O -0.59 -24.51 15.17 -4.04 -0.06 -24.57 16 15 N -0.61 -19.40 3.33 -815.62 -2.71 -22.11 16 16 C 0.10 2.18 4.99 86.73 0.43 2.62 16 17 C -0.13 -3.39 6.57 31.79 0.21 -3.18 16 18 C 0.17 6.23 3.69 46.39 0.17 6.40 16 19 H 0.06 2.41 8.13 -2.39 -0.02 2.39 16 20 N -0.72 -35.07 5.28 -316.37 -1.67 -36.74 16 21 C -0.24 -13.39 9.98 84.03 0.84 -12.55 16 22 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 23 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 24 N -0.96 -57.86 13.06 21.65 0.28 -57.58 16 25 Si 0.97 46.10 29.55 68.60 2.03 48.12 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 27 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 28 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 29 C 0.10 3.75 6.60 86.86 0.57 4.33 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 2.17 6.55 -2.39 -0.02 2.16 16 33 H 0.07 0.85 8.06 -2.39 -0.02 0.83 16 34 H 0.11 0.56 8.14 -2.38 -0.02 0.55 16 35 H 0.09 0.21 8.14 -2.38 -0.02 0.19 16 36 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.09 0.87 6.37 -2.39 -0.02 0.85 16 39 H 0.22 3.04 3.80 -2.91 -0.01 3.02 16 40 H 0.09 1.60 7.06 -2.39 -0.02 1.58 16 41 H 0.10 1.57 6.79 -2.39 -0.02 1.55 16 42 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.08 2.12 7.99 -2.39 -0.02 2.10 16 44 H 0.38 19.44 7.71 -92.71 -0.71 18.73 16 45 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 46 H 0.05 1.98 8.04 -2.39 -0.02 1.97 16 47 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -75.70 378.20 1.21 -74.49 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.29 Total: 25.67 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 6.49 Total: 14.18 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -5.82 Total: -131.76 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -1.78 Total: -30.70 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -75.70 1.21 -74.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018848091.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.663 kcal (2) G-P(sol) polarization free energy of solvation -75.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds