Wall clock time and date at job start Tue Mar 31 2020 18:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.35832 * 126.45925 * 2 1 4 4 H 0.97007 * 124.91748 * 359.97438 * 3 2 1 5 5 N 1.28454 * 110.16799 * 179.97438 * 3 2 1 6 6 C 1.31931 * 110.21226 * 0.02562 * 5 3 2 7 7 C 1.47522 * 126.46169 * 179.97438 * 6 5 3 8 8 O 1.21595 * 119.99897 * 186.60733 * 7 6 5 9 9 N 1.34775 * 119.99886 * 6.59901 * 7 6 5 10 10 C 1.47094 * 120.94422 * 7.30688 * 9 7 6 11 11 C 1.53133 * 109.62815 * 126.38256 * 10 9 7 12 12 C 1.53119 * 109.48252 * 53.63579 * 11 10 9 13 13 C 1.52858 * 109.34141 * 299.35336 * 12 11 10 14 14 H 1.08997 * 108.60772 * 302.88603 * 13 12 11 15 15 C 1.51259 * 109.76135 * 183.96922 * 13 12 11 16 16 N 1.46889 * 109.35012 * 291.77946 * 15 13 12 17 17 C 1.36939 * 120.76533 * 127.10151 * 16 15 13 18 18 H 1.07998 * 120.00108 * 334.77988 * 17 16 15 19 19 C 1.38817 * 119.99986 * 154.77921 * 17 16 15 20 20 N 1.31609 * 120.00119 * 157.74487 * 19 17 16 21 21 Si 1.86801 * 119.99630 * 337.74585 * 19 17 16 22 22 H 1.48497 * 109.47370 * 95.41309 * 21 19 17 23 23 H 1.48506 * 109.46758 * 215.41400 * 21 19 17 24 24 H 1.48500 * 109.47488 * 335.40814 * 21 19 17 25 25 C 1.46962 * 118.46344 * 307.07714 * 16 15 13 26 26 C 1.53102 * 108.62418 * 54.30009 * 25 16 15 27 27 C 1.47313 * 120.84310 * 186.33668 * 9 7 6 28 28 H 1.09001 * 110.08217 * 355.10524 * 27 9 7 29 29 C 1.35787 * 126.46047 * 180.29895 * 2 1 3 30 30 O 1.36082 * 127.26553 * 0.02562 * 29 2 1 31 31 H 1.08995 * 109.47097 * 90.02757 * 1 2 3 32 32 H 1.09002 * 109.47457 * 210.02470 * 1 2 3 33 33 H 1.08996 * 109.47363 * 330.02321 * 1 2 3 34 34 H 1.09001 * 109.59491 * 6.11941 * 10 9 7 35 35 H 1.08998 * 108.96984 * 246.26864 * 10 9 7 36 36 H 1.08997 * 109.46993 * 293.63172 * 11 10 9 37 37 H 1.08997 * 109.46653 * 173.63315 * 11 10 9 38 38 H 1.08997 * 109.49754 * 179.39365 * 12 11 10 39 39 H 1.09007 * 109.49265 * 59.31354 * 12 11 10 40 40 H 1.09003 * 109.09434 * 172.02372 * 15 13 12 41 41 H 1.08999 * 109.82157 * 51.98061 * 15 13 12 42 42 H 0.96997 * 119.99970 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.61245 * 294.56344 * 25 16 15 44 44 H 1.09000 * 109.61598 * 174.04201 * 25 16 15 45 45 H 1.08998 * 109.45789 * 184.62806 * 26 25 16 46 46 H 1.08999 * 109.43503 * 64.67512 * 26 25 16 47 47 H 0.96697 * 114.00258 * 270.12948 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0044 2.0117 -0.0004 5 7 3.5471 0.7321 0.0005 6 6 3.6374 -0.5841 0.0004 7 6 4.8810 -1.3776 0.0003 8 8 4.8308 -2.5865 -0.1210 9 7 6.0727 -0.7627 0.1346 10 6 6.1523 0.6737 0.4413 11 6 7.0316 0.8880 1.6766 12 6 8.3871 0.2087 1.4627 13 6 8.1749 -1.2911 1.2569 14 1 7.6442 -1.6892 2.1217 15 6 9.5135 -1.9859 1.1419 16 7 10.1662 -1.5809 -0.1101 17 6 11.4428 -1.0854 -0.1060 18 1 11.8348 -0.6101 0.7810 19 6 12.2331 -1.1940 -1.2421 20 7 13.2490 -0.3760 -1.4177 21 14 11.8545 -2.5013 -2.5216 22 1 11.0210 -1.9118 -3.6000 23 1 13.1241 -3.0105 -3.0997 24 1 11.1176 -3.6210 -1.8824 25 6 9.4178 -1.7203 -1.3671 26 6 8.0826 -0.9846 -1.2254 27 6 7.3311 -1.5164 -0.0012 28 1 7.1197 -2.5786 -0.1245 29 6 2.3139 -1.0921 -0.0057 30 8 1.9326 -2.3983 -0.0130 31 1 -0.3633 -0.0005 -1.0276 32 1 -0.3634 -0.8898 0.5142 33 1 -0.3634 0.8901 0.5134 34 1 5.1523 1.0624 0.6337 35 1 6.5881 1.1945 -0.4113 36 1 6.5427 0.4562 2.5499 37 1 7.1815 1.9559 1.8350 38 1 9.0170 0.3701 2.3374 39 1 8.8711 0.6318 0.5823 40 1 9.3562 -3.0646 1.1383 41 1 10.1454 -1.7129 1.9870 42 1 13.8010 -0.4517 -2.2117 43 1 9.2342 -2.7757 -1.5685 44 1 9.9911 -1.2835 -2.1848 45 1 7.4813 -1.1479 -2.1197 46 1 8.2678 0.0825 -1.1023 47 1 1.8201 -2.7802 0.8682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021567586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:08 Heat of formation + Delta-G solvation = 37.708581 kcal Electronic energy + Delta-G solvation = -30426.495399 eV Core-core repulsion = 26419.395494 eV Total energy + Delta-G solvation = -4007.099905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.01883 -40.22526 -38.11729 -37.36565 -35.68002 -33.34842 -32.64343 -32.26954 -31.30905 -30.32246 -30.04436 -27.30595 -25.65161 -25.55712 -23.47478 -22.54754 -22.15944 -21.60420 -21.32814 -19.31147 -18.57831 -17.86590 -17.40657 -16.81337 -16.55740 -16.17306 -15.85528 -15.19587 -14.72291 -14.60695 -14.44283 -14.19522 -14.00141 -13.81252 -13.58399 -13.40627 -13.05651 -13.03333 -12.92142 -12.78152 -12.36745 -12.22256 -11.92973 -11.84887 -11.54239 -10.97168 -10.79758 -10.69497 -10.45917 -10.35261 -10.14066 -10.03545 -9.96173 -9.78277 -9.61437 -9.47661 -9.37414 -9.02239 -8.58605 -8.27964 -6.95972 -5.91067 -3.23695 1.27921 1.60983 2.36792 3.06653 3.34807 3.37728 3.54181 3.58097 3.91678 4.24804 4.37264 4.57959 4.60297 4.91951 4.98861 5.02074 5.13154 5.24196 5.25047 5.30379 5.32234 5.39129 5.43450 5.53077 5.67316 5.74997 5.83801 5.89762 6.05798 6.12214 6.15043 6.20842 6.28452 6.36011 6.43246 6.44891 6.57022 6.65865 6.69569 6.73382 6.82490 6.90615 7.03426 7.42447 7.47480 7.66043 7.97910 8.30535 8.35775 8.97476 9.76659 10.14439 11.24747 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.003193 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.596993 B = 8768.084892 C = 9183.392328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.010 4.010 3 N -0.379 5.379 4 H 0.449 0.551 5 N -0.242 5.242 6 C -0.017 4.017 7 C 0.596 3.404 8 O -0.529 6.529 9 N -0.591 5.591 10 C 0.088 3.912 11 C -0.131 4.131 12 C -0.110 4.110 13 C -0.107 4.107 14 H 0.062 0.938 15 C 0.156 3.844 16 N -0.603 5.603 17 C -0.254 4.254 18 H 0.087 0.913 19 C 0.022 3.978 20 N -0.908 5.908 21 Si 0.878 3.122 22 H -0.290 1.290 23 H -0.304 1.304 24 H -0.269 1.269 25 C 0.130 3.870 26 C -0.142 4.142 27 C 0.155 3.845 28 H 0.096 0.904 29 C 0.045 3.955 30 O -0.450 6.450 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.023 0.977 41 H 0.067 0.933 42 H 0.262 0.738 43 H 0.028 0.972 44 H 0.075 0.925 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.751 5.041 6.322 27.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 N -0.096 5.096 4 H 0.294 0.706 5 N -0.078 5.078 6 C -0.179 4.179 7 C 0.381 3.619 8 O -0.403 6.403 9 N -0.322 5.322 10 C -0.035 4.035 11 C -0.170 4.170 12 C -0.147 4.147 13 C -0.128 4.128 14 H 0.080 0.920 15 C 0.029 3.971 16 N -0.326 5.326 17 C -0.382 4.382 18 H 0.104 0.896 19 C -0.177 4.177 20 N -0.552 5.552 21 Si 0.708 3.292 22 H -0.218 1.218 23 H -0.233 1.233 24 H -0.194 1.194 25 C 0.004 3.996 26 C -0.182 4.182 27 C 0.053 3.947 28 H 0.114 0.886 29 C -0.011 4.011 30 O -0.255 6.255 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.134 0.866 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.041 0.959 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.046 0.954 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -25.943 5.363 5.552 27.067 hybrid contribution -0.709 -0.815 -0.361 1.139 sum -26.652 4.548 5.191 27.531 Atomic orbital electron populations 1.20288 0.86021 1.03813 1.03588 1.21564 0.95370 0.87467 1.09251 1.43259 1.03131 1.09243 1.53927 0.70616 1.73567 1.00807 1.14098 1.19367 1.22528 0.95547 0.89854 1.09942 1.16882 0.81365 0.86216 0.77387 1.90811 1.86086 1.12897 1.50547 1.48317 1.05189 1.10385 1.68357 1.22371 1.03080 0.80450 0.97625 1.21928 0.96924 1.00720 0.97401 1.21538 0.95436 0.94707 1.03050 1.21522 0.97767 0.97117 0.96355 0.91990 1.20545 0.91073 0.95469 0.90010 1.44360 1.13005 1.74523 1.00734 1.18897 0.87595 1.30569 1.01166 0.89569 1.25207 0.96094 0.98506 0.97852 1.69847 1.20528 1.36410 1.28367 0.87019 0.76011 0.84405 0.81728 1.21796 1.23283 1.19379 1.21286 0.90948 0.97047 0.90362 1.22419 0.97562 1.01929 0.96266 1.21299 0.81234 0.96563 0.95565 0.88627 1.17783 0.89022 0.85124 1.09157 1.84929 1.88700 1.19116 1.32798 0.90131 0.89545 0.90986 0.86618 0.91608 0.92473 0.91160 0.92099 0.89987 0.95920 0.91409 0.92866 0.95437 0.90741 0.92727 0.90937 0.76009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.44 36.01 0.38 0.05 16 2 C -0.01 -0.08 7.27 -81.70 -0.59 -0.68 16 3 N -0.38 -2.83 6.87 33.71 0.23 -2.60 16 4 H 0.45 1.51 8.96 -190.44 -1.71 -0.20 16 5 N -0.24 -2.70 8.72 33.45 0.29 -2.41 16 6 C -0.02 -0.24 6.84 -82.70 -0.57 -0.80 16 7 C 0.60 10.00 7.69 -12.48 -0.10 9.91 16 8 O -0.53 -10.41 16.01 3.55 0.06 -10.36 16 9 N -0.59 -9.43 2.69 -165.98 -0.45 -9.87 16 10 C 0.09 1.19 5.62 -3.65 -0.02 1.17 16 11 C -0.13 -1.72 6.09 -26.60 -0.16 -1.88 16 12 C -0.11 -1.76 4.82 -26.74 -0.13 -1.89 16 13 C -0.11 -1.82 2.39 -91.49 -0.22 -2.04 16 14 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 15 C 0.16 3.08 5.82 -4.71 -0.03 3.05 16 16 N -0.60 -14.19 2.44 -173.53 -0.42 -14.62 16 17 C -0.25 -6.99 10.06 -15.06 -0.15 -7.15 16 18 H 0.09 2.51 8.05 -52.49 -0.42 2.09 16 19 C 0.02 0.64 5.23 -17.43 -0.09 0.54 16 20 N -0.91 -27.83 13.97 55.49 0.78 -27.06 16 21 Si 0.88 22.71 24.37 -169.99 -4.14 18.57 16 22 H -0.29 -7.31 6.68 56.52 0.38 -6.93 16 23 H -0.30 -8.04 7.11 56.52 0.40 -7.63 16 24 H -0.27 -6.87 6.53 56.52 0.37 -6.50 16 25 C 0.13 2.91 4.20 -3.74 -0.02 2.89 16 26 C -0.14 -2.70 5.05 -26.59 -0.13 -2.83 16 27 C 0.16 2.76 2.64 -67.32 -0.18 2.58 16 28 H 0.10 1.86 7.06 -51.93 -0.37 1.49 16 29 C 0.04 0.53 7.28 -39.12 -0.28 0.25 16 30 O -0.45 -5.25 13.21 -21.73 -0.29 -5.53 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.12 1.42 4.21 -65.79 -0.28 1.14 16 35 H 0.07 0.92 7.31 -51.93 -0.38 0.54 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.08 1.53 6.18 -51.92 -0.32 1.21 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 1.32 7.91 -51.93 -0.41 0.91 16 42 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 43 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 44 H 0.07 1.82 4.33 -51.93 -0.23 1.60 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.07 1.39 5.42 -51.93 -0.28 1.11 16 47 H 0.39 2.79 9.07 45.56 0.41 3.20 16 LS Contribution 357.28 15.07 5.38 5.38 Total: -1.00 -35.62 357.28 -8.20 -43.82 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.34 Total: 1.49 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -2.29 Total: 3.18 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.43 Total: -56.56 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: -0.23 Total: -15.89 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.14 Total: 18.57 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.62 -8.20 -43.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021567586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.530 kcal (2) G-P(sol) polarization free energy of solvation -35.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds