Wall clock time and date at job start Tue Mar 31 2020 18:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.35845 * 126.45951 * 2 1 4 4 H 0.97005 * 124.91450 * 0.06398 * 3 2 1 5 5 N 1.28454 * 110.16540 * 180.02562 * 3 2 1 6 6 C 1.31922 * 110.21649 * 0.02562 * 5 3 2 7 7 C 1.47528 * 126.46308 * 180.02562 * 6 5 3 8 8 O 1.21591 * 119.99695 * 173.96282 * 7 6 5 9 9 N 1.34776 * 119.99746 * 353.96951 * 7 6 5 10 10 C 1.47062 * 120.84425 * 5.16541 * 9 7 6 11 11 C 1.53137 * 109.03579 * 233.41583 * 10 9 7 12 12 C 1.53144 * 109.61373 * 305.98833 * 11 10 9 13 13 C 1.52815 * 109.27482 * 60.85176 * 12 11 10 14 14 H 1.08998 * 109.47139 * 58.03777 * 13 12 11 15 15 C 1.53069 * 110.33727 * 178.57997 * 13 12 11 16 16 N 1.47076 * 108.32837 * 175.44355 * 15 13 12 17 17 C 1.36936 * 120.46693 * 126.71257 * 16 15 13 18 18 H 1.07996 * 120.00494 * 215.39985 * 17 16 15 19 19 C 1.38821 * 119.99947 * 35.39771 * 17 16 15 20 20 N 1.31614 * 119.99755 * 355.80994 * 19 17 16 21 21 Si 1.86801 * 119.99962 * 175.80574 * 19 17 16 22 22 H 1.48502 * 109.46768 * 90.00068 * 21 19 17 23 23 H 1.48493 * 109.47028 * 210.00302 * 21 19 17 24 24 H 1.48500 * 109.46930 * 330.00162 * 21 19 17 25 25 C 1.46858 * 119.06515 * 306.68723 * 16 15 13 26 26 C 1.53314 * 109.10512 * 52.64254 * 25 16 15 27 27 C 1.46709 * 120.84183 * 184.88348 * 9 7 6 28 28 H 1.09000 * 109.53077 * 245.23978 * 27 9 7 29 29 C 1.35786 * 126.46403 * 180.02562 * 2 1 3 30 30 O 1.36085 * 127.26457 * 0.23940 * 29 2 1 31 31 H 1.09003 * 109.47072 * 269.97044 * 1 2 3 32 32 H 1.09000 * 109.47818 * 29.97218 * 1 2 3 33 33 H 1.09006 * 109.47035 * 149.97170 * 1 2 3 34 34 H 1.08997 * 109.54674 * 353.27656 * 10 9 7 35 35 H 1.08996 * 109.54749 * 113.45627 * 10 9 7 36 36 H 1.09001 * 109.44823 * 66.02910 * 11 10 9 37 37 H 1.08998 * 109.44784 * 185.97313 * 11 10 9 38 38 H 1.08999 * 109.50676 * 180.79758 * 12 11 10 39 39 H 1.09006 * 109.50534 * 300.91187 * 12 11 10 40 40 H 1.09004 * 109.69532 * 295.14987 * 15 13 12 41 41 H 1.08995 * 109.69666 * 55.69432 * 15 13 12 42 42 H 0.97009 * 119.99730 * 180.02562 * 20 19 17 43 43 H 1.09007 * 109.52778 * 172.52502 * 25 16 15 44 44 H 1.08999 * 109.53345 * 292.74747 * 25 16 15 45 45 H 1.08998 * 109.56433 * 65.73507 * 26 25 16 46 46 H 1.09003 * 109.55892 * 185.95305 * 26 25 16 47 47 H 0.96700 * 113.99825 * 269.68524 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3142 1.0926 0.0000 4 1 2.0044 2.0118 0.0009 5 7 3.5471 0.7322 -0.0005 6 6 3.6374 -0.5840 -0.0015 7 6 4.8811 -1.3775 -0.0018 8 8 4.8302 -2.5874 0.1081 9 7 6.0735 -0.7613 -0.1237 10 6 6.1652 0.7063 -0.1442 11 6 6.9398 1.1409 -1.3917 12 6 8.2907 0.4209 -1.4349 13 6 8.0564 -1.0877 -1.5014 14 1 7.4563 -1.3238 -2.3802 15 6 9.3923 -1.8306 -1.5811 16 7 9.1217 -3.2754 -1.5322 17 6 9.6187 -4.1080 -2.4992 18 1 9.0405 -4.9585 -2.8289 19 6 10.8658 -3.8588 -3.0558 20 7 11.5345 -2.7778 -2.7146 21 14 11.5947 -5.0578 -4.2888 22 1 11.1802 -4.6698 -5.6610 23 1 13.0762 -5.0278 -4.1921 24 1 11.1071 -6.4291 -3.9935 25 6 8.3116 -3.8127 -0.4314 26 6 6.9962 -3.0296 -0.3478 27 6 7.3135 -1.5377 -0.2332 28 1 7.9368 -1.3541 0.6420 29 6 2.3139 -1.0920 -0.0005 30 8 1.9326 -2.3984 -0.0056 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3635 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5143 34 1 5.1630 1.1340 -0.1700 35 1 6.6862 1.0516 0.7487 36 1 6.3649 0.8874 -2.2825 37 1 7.1039 2.2180 -1.3601 38 1 8.8464 0.7421 -2.3159 39 1 8.8602 0.6615 -0.5371 40 1 9.8954 -1.5826 -2.5157 41 1 10.0220 -1.5456 -0.7383 42 1 12.4058 -2.6034 -3.1039 43 1 8.0977 -4.8655 -0.6165 44 1 8.8572 -3.7100 0.5065 45 1 6.4049 -3.2124 -1.2450 46 1 6.4357 -3.3503 0.5303 47 1 1.8241 -2.7798 0.8763 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021567588.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:16 Heat of formation + Delta-G solvation = 45.008286 kcal Electronic energy + Delta-G solvation = -30422.102050 eV Core-core repulsion = 26415.318683 eV Total energy + Delta-G solvation = -4006.783366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.94044 -40.08110 -37.62592 -37.13724 -35.67235 -33.27073 -32.64045 -32.28867 -31.15160 -30.03133 -28.98259 -27.24748 -25.42809 -25.36601 -23.34055 -22.33380 -22.06763 -21.49595 -19.96390 -19.38573 -18.76139 -18.37949 -17.28962 -16.62037 -16.28399 -16.08814 -15.51723 -14.83966 -14.64370 -14.50952 -14.10699 -14.04418 -13.87045 -13.72640 -13.41662 -13.28835 -13.01104 -12.87293 -12.69750 -12.30535 -12.22608 -12.00485 -11.62989 -11.37760 -10.88514 -10.82094 -10.74696 -10.64338 -10.57212 -10.18414 -10.10053 -9.88918 -9.79886 -9.67826 -9.50660 -9.29962 -8.94827 -8.75357 -8.35424 -8.06767 -6.40944 -5.68668 -3.20557 1.36071 1.70558 2.43079 3.21669 3.43481 3.49519 3.50847 3.52503 4.02194 4.32005 4.45216 4.56663 4.70082 5.04832 5.05604 5.22615 5.28982 5.38423 5.39353 5.47686 5.49206 5.59262 5.68679 5.69192 5.85690 5.91932 6.01738 6.13085 6.19617 6.33582 6.43327 6.49780 6.54388 6.60288 6.70674 6.75715 6.83309 6.94034 7.09481 7.20620 7.33238 7.51965 7.54662 7.60140 7.81386 7.88970 7.89903 8.50995 8.64178 9.35364 9.95022 10.54672 11.36913 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020421 B = 0.003192 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.814116 B = 8770.283546 C = 9542.424259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.010 4.010 3 N -0.382 5.382 4 H 0.447 0.553 5 N -0.248 5.248 6 C -0.015 4.015 7 C 0.593 3.407 8 O -0.515 6.515 9 N -0.591 5.591 10 C 0.075 3.925 11 C -0.129 4.129 12 C -0.112 4.112 13 C -0.121 4.121 14 H 0.064 0.936 15 C 0.179 3.821 16 N -0.596 5.596 17 C -0.248 4.248 18 H 0.063 0.937 19 C 0.006 3.994 20 N -0.907 5.907 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.141 3.859 26 C -0.123 4.123 27 C 0.157 3.843 28 H 0.066 0.934 29 C 0.046 3.954 30 O -0.451 6.451 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.015 0.985 42 H 0.253 0.747 43 H 0.054 0.946 44 H 0.014 0.986 45 H 0.062 0.938 46 H 0.083 0.917 47 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.193 12.672 8.318 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 N -0.097 5.097 4 H 0.292 0.708 5 N -0.084 5.084 6 C -0.176 4.176 7 C 0.379 3.621 8 O -0.390 6.390 9 N -0.323 5.323 10 C -0.048 4.048 11 C -0.167 4.167 12 C -0.150 4.150 13 C -0.142 4.142 14 H 0.082 0.918 15 C 0.052 3.948 16 N -0.319 5.319 17 C -0.378 4.378 18 H 0.081 0.919 19 C -0.192 4.192 20 N -0.552 5.552 21 Si 0.732 3.268 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.014 3.986 26 C -0.162 4.162 27 C 0.056 3.944 28 H 0.084 0.916 29 C -0.010 4.010 30 O -0.256 6.256 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.147 0.853 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.033 0.967 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.032 0.968 45 H 0.081 0.919 46 H 0.101 0.899 47 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -20.373 12.961 7.709 25.347 hybrid contribution -0.073 -0.576 -0.230 0.625 sum -20.445 12.384 7.479 25.046 Atomic orbital electron populations 1.20311 0.86101 1.04232 1.03276 1.21553 0.95308 0.87487 1.09314 1.43301 1.03201 1.09166 1.54075 0.70799 1.73283 1.00642 1.14176 1.20307 1.22805 0.95930 0.89727 1.09155 1.16983 0.81247 0.86315 0.77590 1.90848 1.85618 1.12600 1.49898 1.48159 1.06138 1.07399 1.70614 1.22630 1.04693 0.79731 0.97778 1.21874 0.97282 0.99544 0.98047 1.21499 0.95829 0.95796 1.01923 1.22396 1.01138 0.94110 0.96536 0.91754 1.20965 0.89383 0.82049 1.02369 1.44075 1.60075 1.02707 1.25016 1.19194 0.97344 1.07473 1.13782 0.91945 1.25308 0.96025 0.97651 1.00169 1.69888 1.13863 1.25534 1.45895 0.86293 0.78327 0.81382 0.80816 1.21532 1.21623 1.20415 1.21134 0.90262 0.96449 0.90775 1.22553 0.98129 0.92301 1.03236 1.21483 0.82716 0.92251 0.97978 0.91622 1.17770 0.89027 0.85154 1.09046 1.84902 1.88690 1.19082 1.32940 0.90330 0.90975 0.89241 0.85265 0.92210 0.92156 0.91561 0.91749 0.92281 0.88006 0.96682 0.93664 0.92696 0.96813 0.91909 0.89905 0.75834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.44 36.00 0.38 0.00 16 2 C -0.01 -0.09 7.27 -81.70 -0.59 -0.68 16 3 N -0.38 -3.01 6.87 33.71 0.23 -2.78 16 4 H 0.45 1.64 8.96 -190.44 -1.71 -0.07 16 5 N -0.25 -2.87 8.56 33.45 0.29 -2.58 16 6 C -0.01 -0.21 6.91 -82.70 -0.57 -0.78 16 7 C 0.59 10.46 7.58 -12.47 -0.09 10.37 16 8 O -0.52 -10.32 12.21 3.52 0.04 -10.27 16 9 N -0.59 -10.08 2.96 -166.25 -0.49 -10.57 16 10 C 0.08 1.05 6.32 -3.67 -0.02 1.03 16 11 C -0.13 -1.80 6.07 -26.59 -0.16 -1.96 16 12 C -0.11 -1.87 5.23 -26.75 -0.14 -2.01 16 13 C -0.12 -2.46 2.21 -90.31 -0.20 -2.66 16 14 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 15 C 0.18 4.41 4.58 -3.69 -0.02 4.39 16 16 N -0.60 -15.83 3.01 -172.25 -0.52 -16.35 16 17 C -0.25 -7.12 9.54 -15.06 -0.14 -7.26 16 18 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 19 C 0.01 0.18 5.32 -17.43 -0.09 0.09 16 20 N -0.91 -26.62 10.61 55.49 0.59 -26.03 16 21 Si 0.90 22.33 29.56 -169.99 -5.02 17.31 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.14 3.27 6.50 -3.68 -0.02 3.25 16 26 C -0.12 -2.60 3.81 -26.59 -0.10 -2.71 16 27 C 0.16 3.05 2.67 -67.47 -0.18 2.87 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 29 C 0.05 0.57 7.28 -39.11 -0.28 0.29 16 30 O -0.45 -5.61 13.21 -21.77 -0.29 -5.90 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.13 1.65 3.73 -115.27 -0.43 1.22 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 2.81 5.94 -51.93 -0.31 2.50 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.05 1.27 7.93 -51.92 -0.41 0.86 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 1.47 7.46 -51.93 -0.39 1.08 16 46 H 0.08 1.73 6.10 -51.93 -0.32 1.41 16 47 H 0.39 3.16 9.07 45.56 0.41 3.57 16 LS Contribution 363.08 15.07 5.47 5.47 Total: -1.00 -35.12 363.08 -9.72 -44.85 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.77 Total: 2.65 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -2.25 Total: 4.21 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.10 Total: -58.31 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.24 Total: -16.17 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.12 -9.72 -44.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021567588.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.853 kcal (2) G-P(sol) polarization free energy of solvation -35.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds