Wall clock time and date at job start Tue Mar 31 2020 18:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.35834 * 126.45837 * 2 1 4 4 H 0.97000 * 124.92033 * 0.02562 * 3 2 1 5 5 N 1.28455 * 110.16596 * 179.70261 * 3 2 1 6 6 C 1.31929 * 110.21286 * 0.46016 * 5 3 2 7 7 C 1.47529 * 126.46542 * 179.81627 * 6 5 3 8 8 O 1.21590 * 120.00220 * 185.19683 * 7 6 5 9 9 N 1.34772 * 119.99709 * 5.19385 * 7 6 5 10 10 C 1.47070 * 120.84678 * 354.89804 * 9 7 6 11 11 C 1.53132 * 109.04343 * 126.60017 * 10 9 7 12 12 C 1.53146 * 109.62027 * 53.99638 * 11 10 9 13 13 C 1.52814 * 109.26724 * 299.15415 * 12 11 10 14 14 H 1.08997 * 109.47979 * 301.98877 * 13 12 11 15 15 C 1.53075 * 110.33432 * 181.43776 * 13 12 11 16 16 N 1.47063 * 108.33936 * 184.58240 * 15 13 12 17 17 C 1.36942 * 120.46960 * 233.28975 * 16 15 13 18 18 H 1.07997 * 119.99823 * 149.29742 * 17 16 15 19 19 C 1.38812 * 119.99562 * 329.29452 * 17 16 15 20 20 N 1.31620 * 120.00086 * 350.54105 * 19 17 16 21 21 Si 1.86797 * 119.99650 * 170.54733 * 19 17 16 22 22 H 1.48494 * 109.47066 * 59.99920 * 21 19 17 23 23 H 1.48502 * 109.46972 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47174 * 299.99488 * 21 19 17 25 25 C 1.46869 * 119.06391 * 53.30748 * 16 15 13 26 26 C 1.53318 * 109.10152 * 307.35427 * 25 16 15 27 27 C 1.46711 * 120.84580 * 174.92505 * 9 7 6 28 28 H 1.08994 * 109.53379 * 114.77657 * 27 9 7 29 29 C 1.35783 * 126.45820 * 179.97438 * 2 1 3 30 30 O 1.36077 * 127.26954 * 0.04136 * 29 2 1 31 31 H 1.09000 * 109.47273 * 270.02835 * 1 2 3 32 32 H 1.09003 * 109.47174 * 30.02592 * 1 2 3 33 33 H 1.08996 * 109.47382 * 150.02455 * 1 2 3 34 34 H 1.09002 * 109.54311 * 6.73154 * 10 9 7 35 35 H 1.09002 * 109.61613 * 246.50767 * 10 9 7 36 36 H 1.08999 * 109.44108 * 293.94934 * 11 10 9 37 37 H 1.08997 * 109.44362 * 174.04555 * 11 10 9 38 38 H 1.09002 * 109.50009 * 179.21828 * 12 11 10 39 39 H 1.08998 * 109.54017 * 59.11359 * 12 11 10 40 40 H 1.09006 * 109.68740 * 304.29100 * 15 13 12 41 41 H 1.09000 * 109.69252 * 64.82905 * 15 13 12 42 42 H 0.97000 * 120.00163 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.53187 * 67.24095 * 25 16 15 44 44 H 1.08997 * 109.53278 * 187.39005 * 25 16 15 45 45 H 1.09004 * 109.55208 * 294.26670 * 26 25 16 46 46 H 1.08994 * 109.55737 * 173.94775 * 26 25 16 47 47 H 0.96699 * 113.99733 * 269.97497 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3141 1.0925 0.0000 4 1 2.0044 2.0117 0.0004 5 7 3.5471 0.7321 0.0063 6 6 3.6373 -0.5840 0.0008 7 6 4.8810 -1.3777 0.0013 8 8 4.8297 -2.5883 -0.0996 9 7 6.0739 -0.7607 0.1135 10 6 6.1658 0.7071 0.1245 11 6 6.9467 1.1496 1.3651 12 6 8.2978 0.4297 1.4061 13 6 8.0635 -1.0784 1.4835 14 1 7.4674 -1.3088 2.3664 15 6 9.3998 -1.8210 1.5616 16 7 9.1291 -3.2660 1.5227 17 6 9.6304 -4.0927 2.4925 18 1 9.0888 -4.9830 2.7760 19 6 10.8348 -3.7864 3.1111 20 7 11.5856 -2.8118 2.6434 21 14 11.3898 -4.7575 4.6071 22 1 11.5274 -6.1907 4.2437 23 1 12.6990 -4.2375 5.0770 24 1 10.3839 -4.6158 5.6904 25 6 8.3139 -3.8099 0.4288 26 6 6.9981 -3.0273 0.3466 27 6 7.3141 -1.5362 0.2272 28 1 7.9351 -1.3615 -0.6513 29 6 2.3138 -1.0921 0.0005 30 8 1.9325 -2.3983 0.0003 31 1 -0.3634 0.0005 1.0277 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5134 34 1 5.1636 1.1349 0.1527 35 1 6.6827 1.0481 -0.7725 36 1 6.3762 0.9020 2.2603 37 1 7.1103 2.2265 1.3259 38 1 8.8577 0.7565 2.2824 39 1 8.8634 0.6644 0.5044 40 1 10.0254 -1.5415 0.7138 41 1 9.9074 -1.5667 2.4921 42 1 12.4270 -2.5974 3.0759 43 1 8.8553 -3.7126 -0.5122 44 1 8.1023 -4.8619 0.6204 45 1 6.4111 -3.2050 1.2478 46 1 6.4345 -3.3521 -0.5279 47 1 1.8222 -2.7760 0.8836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021567589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:21 Heat of formation + Delta-G solvation = 45.227511 kcal Electronic energy + Delta-G solvation = -30440.220837 eV Core-core repulsion = 26433.446977 eV Total energy + Delta-G solvation = -4006.773860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.94671 -40.10887 -37.64365 -37.15364 -35.69726 -33.28153 -32.66165 -32.29579 -31.15529 -30.05866 -29.00763 -27.25285 -25.44301 -25.37691 -23.35958 -22.36251 -22.09886 -21.50113 -19.99210 -19.40246 -18.78060 -18.37456 -17.31033 -16.62327 -16.27729 -16.10762 -15.54132 -14.85922 -14.62444 -14.45651 -14.15819 -14.07112 -13.89128 -13.74514 -13.42988 -13.30718 -13.02487 -12.89830 -12.71612 -12.33829 -12.23896 -12.02548 -11.66092 -11.40847 -10.88883 -10.80385 -10.75902 -10.67235 -10.57003 -10.22685 -10.11543 -9.93309 -9.79545 -9.70044 -9.51145 -9.30105 -8.95112 -8.77523 -8.38232 -8.08618 -6.49201 -5.68686 -3.15598 1.35483 1.69663 2.42750 3.20480 3.44078 3.48228 3.50079 3.50594 4.01133 4.31407 4.44948 4.56570 4.69325 5.04129 5.05070 5.20352 5.26376 5.36381 5.38050 5.46907 5.49598 5.56268 5.66747 5.67969 5.84179 5.89090 6.00621 6.11204 6.18034 6.30561 6.40346 6.47838 6.51929 6.57601 6.67903 6.72359 6.80837 6.92053 7.07681 7.18701 7.30352 7.47390 7.53357 7.58952 7.79452 7.80235 7.87900 8.50266 8.58460 9.32502 9.94637 10.52241 11.38746 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019864 B = 0.003221 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.211865 B = 8691.740478 C = 9389.183554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.010 4.010 3 N -0.382 5.382 4 H 0.447 0.553 5 N -0.248 5.248 6 C -0.014 4.014 7 C 0.593 3.407 8 O -0.513 6.513 9 N -0.591 5.591 10 C 0.075 3.925 11 C -0.128 4.128 12 C -0.113 4.113 13 C -0.120 4.120 14 H 0.064 0.936 15 C 0.183 3.817 16 N -0.595 5.595 17 C -0.246 4.246 18 H 0.063 0.937 19 C 0.001 3.999 20 N -0.909 5.909 21 Si 0.904 3.096 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.140 3.860 26 C -0.123 4.123 27 C 0.158 3.842 28 H 0.065 0.935 29 C 0.046 3.954 30 O -0.451 6.451 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.018 0.982 41 H 0.094 0.906 42 H 0.253 0.747 43 H 0.014 0.986 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.084 0.916 47 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.455 12.800 -4.981 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 N -0.097 5.097 4 H 0.292 0.708 5 N -0.084 5.084 6 C -0.176 4.176 7 C 0.378 3.622 8 O -0.387 6.387 9 N -0.323 5.323 10 C -0.049 4.049 11 C -0.167 4.167 12 C -0.151 4.151 13 C -0.141 4.141 14 H 0.083 0.917 15 C 0.056 3.944 16 N -0.317 5.317 17 C -0.376 4.376 18 H 0.081 0.919 19 C -0.197 4.197 20 N -0.554 5.554 21 Si 0.734 3.266 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.211 1.211 25 C 0.013 3.987 26 C -0.162 4.162 27 C 0.056 3.944 28 H 0.083 0.917 29 C -0.010 4.010 30 O -0.256 6.256 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.148 0.852 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.036 0.964 41 H 0.112 0.888 42 H 0.063 0.937 43 H 0.032 0.968 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.102 0.898 47 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -20.636 13.090 -5.592 25.069 hybrid contribution -0.140 -0.464 1.334 1.419 sum -20.776 12.626 -4.259 24.682 Atomic orbital electron populations 1.20312 0.86098 1.04190 1.03328 1.21554 0.95314 0.87492 1.09295 1.43295 1.03206 1.09167 1.54060 0.70797 1.73280 1.00641 1.14172 1.20328 1.22805 0.95930 0.89725 1.09147 1.16986 0.81252 0.86361 0.77617 1.90860 1.85601 1.12558 1.49705 1.48146 1.06075 1.07372 1.70744 1.22638 1.04716 0.79723 0.97817 1.21867 0.97183 0.99548 0.98081 1.21501 0.95909 0.95721 1.01963 1.22280 1.00928 0.94124 0.96737 0.91727 1.20813 0.89519 0.82089 1.01962 1.44095 1.59345 1.02696 1.25598 1.19187 1.00548 1.05565 1.12349 0.91897 1.25134 0.95528 0.98864 1.00159 1.69946 1.12687 1.31939 1.40810 0.86338 0.77563 0.79743 0.82913 1.20912 1.21676 1.21104 1.21128 0.90274 0.96406 0.90870 1.22542 0.98114 0.92300 1.03224 1.21357 0.82782 0.92272 0.97990 0.91672 1.17772 0.89021 0.85147 1.09053 1.84889 1.88681 1.19139 1.32937 0.90301 0.90984 0.89248 0.85205 0.92205 0.92176 0.91532 0.91773 0.92207 0.96438 0.88823 0.93676 0.96786 0.92677 0.91985 0.89759 0.75799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.44 36.00 0.38 0.00 16 2 C -0.01 -0.09 7.27 -81.70 -0.59 -0.68 16 3 N -0.38 -2.98 6.87 33.71 0.23 -2.75 16 4 H 0.45 1.61 8.96 -190.45 -1.71 -0.09 16 5 N -0.25 -2.86 8.56 33.45 0.29 -2.57 16 6 C -0.01 -0.21 6.91 -82.69 -0.57 -0.78 16 7 C 0.59 10.39 7.59 -12.47 -0.09 10.30 16 8 O -0.51 -10.30 12.21 3.45 0.04 -10.26 16 9 N -0.59 -9.99 2.97 -166.54 -0.49 -10.49 16 10 C 0.07 1.03 6.33 -3.66 -0.02 1.01 16 11 C -0.13 -1.74 6.07 -26.59 -0.16 -1.91 16 12 C -0.11 -1.85 5.24 -26.75 -0.14 -1.99 16 13 C -0.12 -2.39 2.21 -90.53 -0.20 -2.59 16 14 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 15 C 0.18 4.46 4.58 -3.70 -0.02 4.45 16 16 N -0.59 -15.67 3.00 -172.25 -0.52 -16.19 16 17 C -0.25 -7.03 9.58 -15.06 -0.14 -7.17 16 18 H 0.06 1.77 7.85 -52.49 -0.41 1.36 16 19 C 0.00 0.03 5.08 -17.43 -0.09 -0.06 16 20 N -0.91 -26.72 10.92 55.49 0.61 -26.12 16 21 Si 0.90 22.27 29.56 -169.99 -5.03 17.24 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.14 3.24 6.50 -3.68 -0.02 3.22 16 26 C -0.12 -2.57 3.82 -26.62 -0.10 -2.67 16 27 C 0.16 3.03 2.64 -67.73 -0.18 2.85 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 C 0.05 0.57 7.28 -39.11 -0.28 0.29 16 30 O -0.45 -5.58 13.21 -21.82 -0.29 -5.87 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.13 1.64 3.72 -116.09 -0.43 1.21 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 2.55 6.02 -51.93 -0.31 2.24 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 1.27 7.93 -51.93 -0.41 0.85 16 45 H 0.06 1.41 7.46 -51.93 -0.39 1.02 16 46 H 0.08 1.77 6.11 -51.93 -0.32 1.46 16 47 H 0.39 3.26 9.07 45.56 0.41 3.68 16 LS Contribution 363.26 15.07 5.47 5.47 Total: -1.00 -35.06 363.26 -9.71 -44.77 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.77 Total: 2.50 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -2.25 Total: 4.26 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.11 Total: -58.12 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.25 Total: -16.12 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.06 -9.71 -44.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021567589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.999 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds