Wall clock time and date at job start Tue Mar 31 2020 18:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.35834 * 126.45837 * 2 1 4 4 H 0.97000 * 124.92033 * 0.02562 * 3 2 1 5 5 N 1.28455 * 110.16596 * 179.70261 * 3 2 1 6 6 C 1.31929 * 110.21286 * 0.46016 * 5 3 2 7 7 C 1.47529 * 126.46542 * 179.81627 * 6 5 3 8 8 O 1.21590 * 120.00220 * 185.19683 * 7 6 5 9 9 N 1.34772 * 119.99709 * 5.19385 * 7 6 5 10 10 C 1.47070 * 120.84678 * 354.89804 * 9 7 6 11 11 C 1.53132 * 109.04343 * 126.60017 * 10 9 7 12 12 C 1.53146 * 109.62027 * 53.99638 * 11 10 9 13 13 C 1.52814 * 109.26724 * 299.15415 * 12 11 10 14 14 H 1.08997 * 109.47979 * 301.98877 * 13 12 11 15 15 C 1.53075 * 110.33432 * 181.43776 * 13 12 11 16 16 N 1.47063 * 108.33936 * 184.58240 * 15 13 12 17 17 C 1.36942 * 120.46960 * 233.28975 * 16 15 13 18 18 H 1.07997 * 119.99823 * 149.29742 * 17 16 15 19 19 C 1.38812 * 119.99562 * 329.29452 * 17 16 15 20 20 N 1.31620 * 120.00086 * 350.54105 * 19 17 16 21 21 Si 1.86797 * 119.99650 * 170.54733 * 19 17 16 22 22 H 1.48494 * 109.47066 * 59.99920 * 21 19 17 23 23 H 1.48502 * 109.46972 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47174 * 299.99488 * 21 19 17 25 25 C 1.46869 * 119.06391 * 53.30748 * 16 15 13 26 26 C 1.53318 * 109.10152 * 307.35427 * 25 16 15 27 27 C 1.46711 * 120.84580 * 174.92505 * 9 7 6 28 28 H 1.08994 * 109.53379 * 114.77657 * 27 9 7 29 29 C 1.35783 * 126.45820 * 179.97438 * 2 1 3 30 30 O 1.36077 * 127.26954 * 0.04136 * 29 2 1 31 31 H 1.09000 * 109.47273 * 270.02835 * 1 2 3 32 32 H 1.09003 * 109.47174 * 30.02592 * 1 2 3 33 33 H 1.08996 * 109.47382 * 150.02455 * 1 2 3 34 34 H 1.09002 * 109.54311 * 6.73154 * 10 9 7 35 35 H 1.09002 * 109.61613 * 246.50767 * 10 9 7 36 36 H 1.08999 * 109.44108 * 293.94934 * 11 10 9 37 37 H 1.08997 * 109.44362 * 174.04555 * 11 10 9 38 38 H 1.09002 * 109.50009 * 179.21828 * 12 11 10 39 39 H 1.08998 * 109.54017 * 59.11359 * 12 11 10 40 40 H 1.09006 * 109.68740 * 304.29100 * 15 13 12 41 41 H 1.09000 * 109.69252 * 64.82905 * 15 13 12 42 42 H 0.97000 * 120.00163 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.53187 * 67.24095 * 25 16 15 44 44 H 1.08997 * 109.53278 * 187.39005 * 25 16 15 45 45 H 1.09004 * 109.55208 * 294.26670 * 26 25 16 46 46 H 1.08994 * 109.55737 * 173.94775 * 26 25 16 47 47 H 0.96699 * 113.99733 * 269.97497 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3141 1.0925 0.0000 4 1 2.0044 2.0117 0.0004 5 7 3.5471 0.7321 0.0063 6 6 3.6373 -0.5840 0.0008 7 6 4.8810 -1.3777 0.0013 8 8 4.8297 -2.5883 -0.0996 9 7 6.0739 -0.7607 0.1135 10 6 6.1658 0.7071 0.1245 11 6 6.9467 1.1496 1.3651 12 6 8.2978 0.4297 1.4061 13 6 8.0635 -1.0784 1.4835 14 1 7.4674 -1.3088 2.3664 15 6 9.3998 -1.8210 1.5616 16 7 9.1291 -3.2660 1.5227 17 6 9.6304 -4.0927 2.4925 18 1 9.0888 -4.9830 2.7760 19 6 10.8348 -3.7864 3.1111 20 7 11.5856 -2.8118 2.6434 21 14 11.3898 -4.7575 4.6071 22 1 11.5274 -6.1907 4.2437 23 1 12.6990 -4.2375 5.0770 24 1 10.3839 -4.6158 5.6904 25 6 8.3139 -3.8099 0.4288 26 6 6.9981 -3.0273 0.3466 27 6 7.3141 -1.5362 0.2272 28 1 7.9351 -1.3615 -0.6513 29 6 2.3138 -1.0921 0.0005 30 8 1.9325 -2.3983 0.0003 31 1 -0.3634 0.0005 1.0277 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5134 34 1 5.1636 1.1349 0.1527 35 1 6.6827 1.0481 -0.7725 36 1 6.3762 0.9020 2.2603 37 1 7.1103 2.2265 1.3259 38 1 8.8577 0.7565 2.2824 39 1 8.8634 0.6644 0.5044 40 1 10.0254 -1.5415 0.7138 41 1 9.9074 -1.5667 2.4921 42 1 12.4270 -2.5974 3.0759 43 1 8.8553 -3.7126 -0.5122 44 1 8.1023 -4.8619 0.6204 45 1 6.4111 -3.2050 1.2478 46 1 6.4345 -3.3521 -0.5279 47 1 1.8222 -2.7760 0.8836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021567589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:20 Heat of formation + Delta-G solvation = 19.317124 kcal Electronic energy + Delta-G solvation = -30441.344396 eV Core-core repulsion = 26433.446977 eV Total energy + Delta-G solvation = -4007.897419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.78659 -41.53606 -39.07618 -38.16725 -37.31528 -34.69880 -34.20636 -33.45143 -32.19942 -31.67292 -30.73627 -27.94385 -27.24111 -26.74911 -24.82974 -23.90628 -23.67073 -22.34292 -21.41159 -21.15734 -19.99181 -19.31168 -18.70483 -18.11842 -17.48014 -17.07143 -16.99448 -16.67353 -16.13645 -15.57432 -15.46806 -15.37005 -15.21308 -15.13120 -14.84704 -14.61324 -14.17212 -14.02500 -13.76852 -13.69640 -13.53735 -13.27901 -13.15769 -12.90385 -12.78498 -12.71618 -12.50740 -12.13794 -12.05027 -11.90972 -11.69603 -11.67637 -11.53731 -11.17292 -10.80716 -10.57257 -10.39881 -10.26046 -9.73889 -9.50027 -8.61487 -7.86055 -5.37908 0.38836 0.87321 1.45111 1.47639 1.54584 1.69366 2.03317 2.28313 2.49858 3.05572 3.27260 3.58894 3.63127 3.70644 3.82783 3.87667 4.00932 4.04429 4.13935 4.29195 4.38507 4.41901 4.48891 4.62309 4.72986 4.76743 4.78506 4.86096 4.89241 4.91977 4.97030 5.02077 5.08779 5.10617 5.18138 5.28545 5.30965 5.38946 5.42199 5.53002 5.62526 5.70961 5.78089 6.05859 6.40337 6.46563 6.76425 6.82136 7.15228 7.19209 7.83700 8.36873 9.18563 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019864 B = 0.003221 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.211865 B = 8691.740478 C = 9389.183554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.018 3.982 3 N -0.354 5.354 4 H 0.469 0.531 5 N -0.246 5.246 6 C -0.050 4.050 7 C 0.585 3.415 8 O -0.552 6.552 9 N -0.593 5.593 10 C 0.072 3.928 11 C -0.118 4.118 12 C -0.109 4.109 13 C -0.105 4.105 14 H 0.041 0.959 15 C 0.193 3.807 16 N -0.614 5.614 17 C -0.268 4.268 18 H 0.059 0.941 19 C -0.047 4.047 20 N -0.934 5.934 21 Si 0.971 3.029 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.279 1.279 25 C 0.139 3.861 26 C -0.101 4.101 27 C 0.164 3.836 28 H 0.065 0.935 29 C 0.014 3.986 30 O -0.468 6.468 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.149 0.851 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.000 1.000 41 H 0.063 0.937 42 H 0.252 0.748 43 H 0.015 0.985 44 H 0.049 0.951 45 H 0.039 0.961 46 H 0.085 0.915 47 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.951 15.352 -4.955 28.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 N -0.073 5.073 4 H 0.319 0.681 5 N -0.084 5.084 6 C -0.209 4.209 7 C 0.373 3.627 8 O -0.429 6.429 9 N -0.325 5.325 10 C -0.050 4.050 11 C -0.156 4.156 12 C -0.147 4.147 13 C -0.126 4.126 14 H 0.060 0.940 15 C 0.067 3.933 16 N -0.337 5.337 17 C -0.398 4.398 18 H 0.077 0.923 19 C -0.242 4.242 20 N -0.579 5.579 21 Si 0.799 3.201 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.205 1.205 25 C 0.013 3.987 26 C -0.140 4.140 27 C 0.061 3.939 28 H 0.083 0.917 29 C -0.041 4.041 30 O -0.275 6.275 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.165 0.835 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.018 0.982 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.033 0.967 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.103 0.897 47 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -23.160 15.692 -5.573 28.525 hybrid contribution 0.533 -1.222 1.292 1.856 sum -22.627 14.470 -4.281 27.197 Atomic orbital electron populations 1.20501 0.82819 1.05477 1.04946 1.21984 0.96833 0.86059 1.06110 1.43396 1.02064 1.10344 1.51519 0.68121 1.73029 1.02408 1.12695 1.20311 1.22347 0.95135 0.90801 1.12608 1.17443 0.82260 0.86367 0.76640 1.90810 1.86340 1.14316 1.51425 1.48156 1.05049 1.08580 1.70700 1.22915 1.06107 0.77589 0.98418 1.21821 0.94848 1.01277 0.97686 1.21481 0.98072 0.92901 1.02289 1.22001 0.97900 0.96503 0.96221 0.93998 1.20599 0.91414 0.81847 0.99475 1.44362 1.59734 1.03460 1.26136 1.19464 1.01050 1.05996 1.13339 0.92340 1.25893 0.95479 0.99957 1.02893 1.70113 1.12807 1.33094 1.41924 0.85291 0.76990 0.78448 0.79381 1.20235 1.21400 1.20486 1.21207 0.90981 0.96541 0.90002 1.22258 0.96029 0.93657 1.02056 1.21051 0.84132 0.91386 0.97335 0.91731 1.18098 0.89059 0.85981 1.11008 1.84839 1.88608 1.19797 1.34292 0.88371 0.88042 0.89594 0.83471 0.90944 0.92860 0.87808 0.91923 0.91455 0.98163 0.91857 0.93900 0.96743 0.93213 0.94194 0.89694 0.74488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.44 71.23 0.74 0.34 16 2 C 0.02 0.25 7.27 41.37 0.30 0.55 16 3 N -0.35 -4.21 6.87 -47.27 -0.32 -4.53 16 4 H 0.47 1.14 8.96 -220.00 -1.97 -0.83 16 5 N -0.25 -5.03 8.56 -48.08 -0.41 -5.44 16 6 C -0.05 -1.38 6.91 42.45 0.29 -1.09 16 7 C 0.59 20.80 7.59 86.69 0.66 21.45 16 8 O -0.55 -23.04 12.21 -2.25 -0.03 -23.07 16 9 N -0.59 -19.99 2.97 -799.09 -2.37 -22.36 16 10 C 0.07 1.84 6.33 86.31 0.55 2.38 16 11 C -0.12 -2.94 6.07 30.69 0.19 -2.75 16 12 C -0.11 -3.51 5.24 30.58 0.16 -3.35 16 13 C -0.11 -4.34 2.21 -10.74 -0.02 -4.36 16 14 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 15 C 0.19 9.86 4.58 86.30 0.40 10.25 16 16 N -0.61 -33.84 3.00 -698.87 -2.10 -35.93 16 17 C -0.27 -15.86 9.58 84.03 0.80 -15.06 16 18 H 0.06 3.42 7.85 -2.91 -0.02 3.40 16 19 C -0.05 -2.73 5.08 84.86 0.43 -2.30 16 20 N -0.93 -56.48 10.92 21.65 0.24 -56.24 16 21 Si 0.97 46.64 29.56 68.60 2.03 48.67 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 25 C 0.14 6.75 6.50 86.42 0.56 7.31 16 26 C -0.10 -4.43 3.82 30.66 0.12 -4.32 16 27 C 0.16 6.46 2.64 45.01 0.12 6.57 16 28 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 29 C 0.01 0.34 7.28 22.57 0.16 0.50 16 30 O -0.47 -11.55 13.21 -92.67 -1.22 -12.77 16 31 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.15 3.31 3.72 -85.39 -0.32 3.00 16 35 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 41 H 0.06 3.61 6.02 -2.39 -0.01 3.60 16 42 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 43 H 0.01 0.70 8.14 -2.39 -0.02 0.69 16 44 H 0.05 2.41 7.93 -2.39 -0.02 2.39 16 45 H 0.04 1.91 7.46 -2.38 -0.02 1.89 16 46 H 0.08 3.74 6.11 -2.39 -0.01 3.73 16 47 H 0.40 6.86 9.07 -74.06 -0.67 6.19 16 Total: -1.00 -80.21 363.26 -0.67 -80.88 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -1.93 Total: 14.66 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 5.46 Total: 16.14 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -4.97 Total: -124.51 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -1.25 Total: -35.84 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -80.21 -0.67 -80.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021567589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.193 kcal (2) G-P(sol) polarization free energy of solvation -80.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds