Wall clock time and date at job start Tue Mar 31 2020 19:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32083 * 119.84802 * 2 1 4 4 C 1.32617 * 120.00632 * 180.02562 * 3 2 1 5 5 O 1.35420 * 120.14844 * 179.97438 * 4 3 2 6 6 C 1.40225 * 119.70362 * 0.02562 * 4 3 2 7 7 C 1.47830 * 120.14534 * 180.02562 * 6 4 3 8 8 O 1.21557 * 120.00003 * 359.95730 * 7 6 4 9 9 N 1.34777 * 119.99994 * 179.97438 * 7 6 4 10 10 C 1.46500 * 119.99736 * 180.02562 * 9 7 6 11 11 C 1.53008 * 109.46700 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.58603 * 59.63383 * 11 10 9 13 13 C 1.53196 * 109.58596 * 179.91259 * 11 10 9 14 14 C 1.53036 * 109.31317 * 174.42113 * 13 11 10 15 15 C 1.53037 * 109.54238 * 298.64032 * 14 13 11 16 16 C 1.53195 * 109.31318 * 61.36221 * 15 14 13 17 17 N 1.46917 * 109.58761 * 299.20472 * 11 10 9 18 18 C 1.36939 * 120.63364 * 6.62610 * 17 11 10 19 19 H 1.08001 * 119.99453 * 328.33081 * 18 17 11 20 20 C 1.38814 * 120.00145 * 148.32946 * 18 17 11 21 21 N 1.31616 * 119.99908 * 345.35677 * 20 18 17 22 22 Si 1.86796 * 119.99872 * 165.35433 * 20 18 17 23 23 H 1.48501 * 109.47412 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47104 * 120.00055 * 22 20 18 25 25 H 1.48504 * 109.47093 * 239.99786 * 22 20 18 26 26 N 1.32983 * 119.70596 * 359.97438 * 6 4 3 27 27 C 1.31761 * 119.99125 * 0.02562 * 26 6 4 28 28 C 1.50706 * 119.85645 * 180.02562 * 27 26 6 29 29 H 1.09006 * 109.46542 * 270.02116 * 1 2 3 30 30 H 1.08995 * 109.47464 * 30.01723 * 1 2 3 31 31 H 1.09005 * 109.47180 * 150.02255 * 1 2 3 32 32 H 0.96698 * 114.00489 * 89.99807 * 5 4 3 33 33 H 0.96997 * 120.00269 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47273 * 299.99815 * 10 9 7 35 35 H 1.09000 * 109.47713 * 60.00090 * 10 9 7 36 36 H 1.08996 * 109.50129 * 294.38170 * 13 11 10 37 37 H 1.09000 * 109.49232 * 54.44358 * 13 11 10 38 38 H 1.09000 * 109.45781 * 58.66064 * 14 13 11 39 39 H 1.09001 * 109.46319 * 178.62782 * 14 13 11 40 40 H 1.08998 * 109.49958 * 181.31021 * 15 14 13 41 41 H 1.09003 * 109.49644 * 301.41541 * 15 14 13 42 42 H 1.09003 * 109.58673 * 65.15335 * 16 15 14 43 43 H 1.09002 * 109.58582 * 185.43763 * 16 15 14 44 44 H 0.97002 * 120.00264 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.47116 * 89.99738 * 28 27 26 46 46 H 1.09004 * 109.46876 * 210.00007 * 28 27 26 47 47 H 1.08997 * 109.46745 * 329.99788 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1644 1.1456 0.0000 4 6 3.4906 1.1493 -0.0005 5 8 4.1675 2.3222 -0.0010 6 6 4.1888 -0.0668 -0.0016 7 6 5.6671 -0.0741 -0.0016 8 8 6.2800 0.9756 -0.0015 9 7 6.3352 -1.2446 -0.0021 10 6 7.8001 -1.2518 -0.0016 11 6 8.3030 -2.6969 -0.0017 12 1 7.9331 -3.2124 -0.8880 13 6 9.8349 -2.7076 -0.0033 14 6 10.3311 -4.1484 0.1370 15 6 9.8454 -4.7300 1.4666 16 6 8.3136 -4.7422 1.4848 17 7 7.8265 -3.3843 1.2062 18 6 6.9449 -2.7713 2.0559 19 1 6.9695 -1.6985 2.1777 20 6 6.0195 -3.5288 2.7608 21 7 5.7880 -4.7766 2.4119 22 14 5.1030 -2.7773 4.2046 23 1 5.5407 -1.3705 4.3907 24 1 3.6430 -2.8093 3.9349 25 1 5.3961 -3.5545 5.4356 26 7 3.5152 -1.2134 -0.0016 27 6 2.1976 -1.2033 -0.0011 28 6 1.4373 -2.5045 -0.0005 29 1 -0.3632 0.0004 1.0278 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 4.3644 2.6631 0.8822 33 1 5.8461 -2.0823 -0.0021 34 1 8.1664 -0.7392 -0.8911 35 1 8.1658 -0.7404 0.8889 36 1 10.2007 -2.2863 -0.9396 37 1 10.2037 -2.1124 0.8321 38 1 9.9417 -4.7483 -0.6856 39 1 11.4208 -4.1614 0.1116 40 1 10.2186 -5.7482 1.5764 41 1 10.2141 -4.1162 2.2885 42 1 7.9446 -5.4267 0.7210 43 1 7.9624 -5.0648 2.4650 44 1 5.1411 -5.3059 2.9041 45 1 1.2545 -2.8180 1.0273 46 1 0.4854 -2.3693 -0.5140 47 1 2.0223 -3.2672 -0.5144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024507003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:03 Heat of formation + Delta-G solvation = -9.249186 kcal Electronic energy + Delta-G solvation = -30348.055779 eV Core-core repulsion = 26338.919632 eV Total energy + Delta-G solvation = -4009.136147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.39339 -39.04031 -37.80984 -37.34732 -34.61438 -34.09946 -33.22776 -33.05169 -30.77513 -29.92149 -29.00039 -27.52841 -25.96481 -24.80719 -23.55128 -22.76498 -22.14044 -20.76814 -20.11913 -19.13968 -18.66387 -18.14220 -17.38161 -16.19715 -16.09225 -15.53447 -15.18326 -14.77695 -14.36969 -14.20774 -14.01209 -13.81682 -13.57535 -13.39994 -13.19012 -13.10505 -12.96285 -12.81954 -12.46464 -12.32829 -12.04785 -11.89436 -11.73754 -11.66423 -11.52077 -11.21140 -10.99452 -10.81477 -10.80535 -10.55166 -10.29332 -10.15356 -10.00482 -9.86193 -9.52370 -9.37639 -8.92957 -8.80303 -8.57377 -8.20541 -6.64380 -5.84358 -3.29472 0.41771 1.01886 2.98878 3.26015 3.28949 3.37249 3.40189 3.69146 3.87440 4.05836 4.24446 4.42342 4.63297 4.84141 5.12092 5.20692 5.24459 5.28967 5.33528 5.39905 5.51497 5.61389 5.64030 5.67013 5.68690 5.75329 5.95224 5.97636 6.05834 6.14612 6.26339 6.32925 6.36144 6.40577 6.59291 6.70704 6.72864 6.85309 6.97239 7.10582 7.14492 7.36831 7.56235 7.63119 7.66281 7.79421 8.25363 8.40856 8.78422 9.16557 9.77868 10.36507 11.22952 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012541 B = 0.004532 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.211109 B = 6177.167402 C = 7284.535045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.117 3.883 3 N -0.465 5.465 4 C 0.311 3.689 5 O -0.452 6.452 6 C 0.026 3.974 7 C 0.563 3.437 8 O -0.541 6.541 9 N -0.669 5.669 10 C 0.133 3.867 11 C 0.160 3.840 12 H 0.032 0.968 13 C -0.127 4.127 14 C -0.107 4.107 15 C -0.144 4.144 16 C 0.175 3.825 17 N -0.587 5.587 18 C -0.249 4.249 19 H 0.067 0.933 20 C 0.016 3.984 21 N -0.894 5.894 22 Si 0.887 3.113 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.288 1.288 26 N -0.380 5.380 27 C 0.069 3.931 28 C -0.102 4.102 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.405 0.595 33 H 0.425 0.575 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.044 0.956 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.018 0.982 43 H 0.082 0.918 44 H 0.252 0.748 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.026 3.856 -5.017 8.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.026 4.026 3 N -0.190 5.190 4 C 0.129 3.871 5 O -0.258 6.258 6 C -0.117 4.117 7 C 0.345 3.655 8 O -0.419 6.419 9 N -0.319 5.319 10 C 0.009 3.991 11 C 0.053 3.947 12 H 0.050 0.950 13 C -0.167 4.167 14 C -0.145 4.145 15 C -0.183 4.183 16 C 0.050 3.950 17 N -0.311 5.311 18 C -0.379 4.379 19 H 0.085 0.915 20 C -0.184 4.184 21 N -0.537 5.537 22 Si 0.718 3.282 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.215 1.215 26 N -0.098 5.098 27 C -0.074 4.074 28 C -0.160 4.160 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.264 0.736 33 H 0.265 0.735 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.100 0.900 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.100 0.900 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.588 4.490 -5.539 9.059 hybrid contribution -0.641 0.065 1.449 1.586 sum -6.229 4.555 -4.090 8.733 Atomic orbital electron populations 1.20861 0.87399 1.04226 1.03845 1.22180 0.98251 0.87757 0.94390 1.67881 1.08368 1.30234 1.12554 1.19949 0.86778 0.86546 0.93830 1.84716 1.72808 1.34517 1.33789 1.22600 0.96736 0.89287 1.03095 1.17417 0.84515 0.84843 0.78681 1.90763 1.67751 1.31579 1.51796 1.45899 1.07581 1.08867 1.69564 1.21383 0.79274 0.97527 1.00947 1.20731 0.92050 0.90764 0.91141 0.95016 1.21936 0.97258 0.96936 1.00532 1.21357 0.98482 0.96241 0.98402 1.22195 1.00900 0.98744 0.96502 1.20723 0.87465 0.85662 1.01186 1.44061 1.50680 1.14678 1.21722 1.19140 1.08713 0.92158 1.17894 0.91536 1.24995 0.96853 0.96486 1.00061 1.70010 1.35478 1.08328 1.39917 0.86454 0.79610 0.78846 0.83333 1.20502 1.21770 1.21502 1.68344 1.08164 1.27750 1.05557 1.22175 0.90216 0.96905 0.98097 1.20787 0.98888 0.92305 1.03996 0.89515 0.90015 0.89402 0.73564 0.73538 0.92338 0.91278 0.93003 0.92051 0.92865 0.93712 0.93546 0.92828 0.96340 0.89988 0.93740 0.89637 0.90040 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.78 36.01 0.35 -0.57 16 2 C 0.12 1.60 6.79 -82.30 -0.56 1.04 16 3 N -0.47 -7.38 10.44 -9.01 -0.09 -7.47 16 4 C 0.31 5.41 7.78 -16.47 -0.13 5.28 16 5 O -0.45 -7.38 11.64 -39.81 -0.46 -7.84 16 6 C 0.03 0.50 6.77 -82.70 -0.56 -0.06 16 7 C 0.56 11.50 7.80 -12.34 -0.10 11.40 16 8 O -0.54 -11.66 15.17 -16.54 -0.25 -11.91 16 9 N -0.67 -13.65 3.87 -61.25 -0.24 -13.88 16 10 C 0.13 2.55 4.43 -4.04 -0.02 2.54 16 11 C 0.16 3.12 3.00 -67.60 -0.20 2.92 16 12 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 13 C -0.13 -2.12 5.37 -26.61 -0.14 -2.27 16 14 C -0.11 -1.75 5.88 -26.69 -0.16 -1.90 16 15 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 16 C 0.18 3.92 5.26 -3.71 -0.02 3.90 16 17 N -0.59 -13.43 2.97 -164.76 -0.49 -13.92 16 18 C -0.25 -6.26 6.98 -15.06 -0.11 -6.36 16 19 H 0.07 1.74 5.90 -52.49 -0.31 1.43 16 20 C 0.02 0.41 4.95 -17.43 -0.09 0.32 16 21 N -0.89 -24.05 11.32 55.49 0.63 -23.42 16 22 Si 0.89 21.28 29.58 -169.99 -5.03 16.25 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 N -0.38 -6.96 9.62 -5.80 -0.06 -7.01 16 27 C 0.07 1.04 6.78 -82.44 -0.56 0.48 16 28 C -0.10 -1.17 9.77 36.01 0.35 -0.81 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.09 0.56 5.93 -51.93 -0.31 0.25 16 32 H 0.40 4.96 9.06 45.56 0.41 5.37 16 33 H 0.42 9.30 6.79 -40.82 -0.28 9.02 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.43 7.38 -51.93 -0.38 1.05 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.08 2.07 6.27 -51.93 -0.33 1.74 16 44 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 45 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 47 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 374.76 15.07 5.65 5.65 Total: -1.00 -30.86 374.76 -8.56 -39.43 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.13 Total: 11.04 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: -2.09 Total: 13.09 kcal Atomic # 7 Polarization: -65.46 SS G_CDS: -0.25 Total: -65.71 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.71 Total: -19.76 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.86 -8.56 -39.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024507003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.178 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds