Wall clock time and date at job start Tue Mar 31 2020 19:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32083 * 119.84802 * 2 1 4 4 C 1.32617 * 120.00632 * 180.02562 * 3 2 1 5 5 O 1.35420 * 120.14844 * 179.97438 * 4 3 2 6 6 C 1.40225 * 119.70362 * 0.02562 * 4 3 2 7 7 C 1.47830 * 120.14534 * 180.02562 * 6 4 3 8 8 O 1.21557 * 120.00003 * 359.95730 * 7 6 4 9 9 N 1.34777 * 119.99994 * 179.97438 * 7 6 4 10 10 C 1.46500 * 119.99736 * 180.02562 * 9 7 6 11 11 C 1.53008 * 109.46700 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.58603 * 59.63383 * 11 10 9 13 13 C 1.53196 * 109.58596 * 179.91259 * 11 10 9 14 14 C 1.53036 * 109.31317 * 174.42113 * 13 11 10 15 15 C 1.53037 * 109.54238 * 298.64032 * 14 13 11 16 16 C 1.53195 * 109.31318 * 61.36221 * 15 14 13 17 17 N 1.46917 * 109.58761 * 299.20472 * 11 10 9 18 18 C 1.36939 * 120.63364 * 6.62610 * 17 11 10 19 19 H 1.08001 * 119.99453 * 328.33081 * 18 17 11 20 20 C 1.38814 * 120.00145 * 148.32946 * 18 17 11 21 21 N 1.31616 * 119.99908 * 345.35677 * 20 18 17 22 22 Si 1.86796 * 119.99872 * 165.35433 * 20 18 17 23 23 H 1.48501 * 109.47412 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47104 * 120.00055 * 22 20 18 25 25 H 1.48504 * 109.47093 * 239.99786 * 22 20 18 26 26 N 1.32983 * 119.70596 * 359.97438 * 6 4 3 27 27 C 1.31761 * 119.99125 * 0.02562 * 26 6 4 28 28 C 1.50706 * 119.85645 * 180.02562 * 27 26 6 29 29 H 1.09006 * 109.46542 * 270.02116 * 1 2 3 30 30 H 1.08995 * 109.47464 * 30.01723 * 1 2 3 31 31 H 1.09005 * 109.47180 * 150.02255 * 1 2 3 32 32 H 0.96698 * 114.00489 * 89.99807 * 5 4 3 33 33 H 0.96997 * 120.00269 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47273 * 299.99815 * 10 9 7 35 35 H 1.09000 * 109.47713 * 60.00090 * 10 9 7 36 36 H 1.08996 * 109.50129 * 294.38170 * 13 11 10 37 37 H 1.09000 * 109.49232 * 54.44358 * 13 11 10 38 38 H 1.09000 * 109.45781 * 58.66064 * 14 13 11 39 39 H 1.09001 * 109.46319 * 178.62782 * 14 13 11 40 40 H 1.08998 * 109.49958 * 181.31021 * 15 14 13 41 41 H 1.09003 * 109.49644 * 301.41541 * 15 14 13 42 42 H 1.09003 * 109.58673 * 65.15335 * 16 15 14 43 43 H 1.09002 * 109.58582 * 185.43763 * 16 15 14 44 44 H 0.97002 * 120.00264 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.47116 * 89.99738 * 28 27 26 46 46 H 1.09004 * 109.46876 * 210.00007 * 28 27 26 47 47 H 1.08997 * 109.46745 * 329.99788 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1644 1.1456 0.0000 4 6 3.4906 1.1493 -0.0005 5 8 4.1675 2.3222 -0.0010 6 6 4.1888 -0.0668 -0.0016 7 6 5.6671 -0.0741 -0.0016 8 8 6.2800 0.9756 -0.0015 9 7 6.3352 -1.2446 -0.0021 10 6 7.8001 -1.2518 -0.0016 11 6 8.3030 -2.6969 -0.0017 12 1 7.9331 -3.2124 -0.8880 13 6 9.8349 -2.7076 -0.0033 14 6 10.3311 -4.1484 0.1370 15 6 9.8454 -4.7300 1.4666 16 6 8.3136 -4.7422 1.4848 17 7 7.8265 -3.3843 1.2062 18 6 6.9449 -2.7713 2.0559 19 1 6.9695 -1.6985 2.1777 20 6 6.0195 -3.5288 2.7608 21 7 5.7880 -4.7766 2.4119 22 14 5.1030 -2.7773 4.2046 23 1 5.5407 -1.3705 4.3907 24 1 3.6430 -2.8093 3.9349 25 1 5.3961 -3.5545 5.4356 26 7 3.5152 -1.2134 -0.0016 27 6 2.1976 -1.2033 -0.0011 28 6 1.4373 -2.5045 -0.0005 29 1 -0.3632 0.0004 1.0278 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 4.3644 2.6631 0.8822 33 1 5.8461 -2.0823 -0.0021 34 1 8.1664 -0.7392 -0.8911 35 1 8.1658 -0.7404 0.8889 36 1 10.2007 -2.2863 -0.9396 37 1 10.2037 -2.1124 0.8321 38 1 9.9417 -4.7483 -0.6856 39 1 11.4208 -4.1614 0.1116 40 1 10.2186 -5.7482 1.5764 41 1 10.2141 -4.1162 2.2885 42 1 7.9446 -5.4267 0.7210 43 1 7.9624 -5.0648 2.4650 44 1 5.1411 -5.3059 2.9041 45 1 1.2545 -2.8180 1.0273 46 1 0.4854 -2.3693 -0.5140 47 1 2.0223 -3.2672 -0.5144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024507003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:02 Heat of formation + Delta-G solvation = -32.186441 kcal Electronic energy + Delta-G solvation = -30349.050413 eV Core-core repulsion = 26338.919632 eV Total energy + Delta-G solvation = -4010.130781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.63607 -40.59192 -39.32813 -38.68756 -35.90125 -35.60070 -34.88521 -34.32699 -32.35152 -31.68435 -29.98898 -28.73483 -27.60296 -26.47001 -24.68591 -24.07077 -23.76471 -22.30771 -21.64702 -20.71696 -19.92623 -19.39983 -18.93583 -17.94337 -17.46984 -17.14530 -16.74287 -16.13825 -15.89981 -15.71428 -15.41421 -15.31784 -14.90370 -14.82034 -14.55361 -14.24886 -14.07477 -13.96125 -13.93103 -13.64200 -13.55048 -13.28045 -12.93776 -12.88770 -12.85935 -12.82543 -12.59926 -12.50512 -12.33324 -12.06299 -11.99719 -11.80823 -11.52805 -11.40762 -11.10830 -11.01333 -10.52444 -10.19763 -10.08862 -9.79123 -8.53759 -7.82889 -5.28309 -0.83376 -0.21060 1.32860 1.38472 1.44240 1.60785 1.96882 2.33261 2.46888 2.53644 2.84187 3.10355 3.32970 3.49366 3.59102 3.77797 3.97092 3.98522 4.02415 4.22673 4.27276 4.42205 4.52872 4.54681 4.63362 4.66405 4.70969 4.75144 4.86059 4.87524 4.93182 5.00188 5.06718 5.14035 5.22778 5.28921 5.36693 5.40099 5.46688 5.54947 5.62752 5.75633 5.84191 5.93508 6.37028 6.44248 6.45581 6.66715 7.16586 7.21385 7.88906 8.42857 9.22138 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012541 B = 0.004532 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.211109 B = 6177.167402 C = 7284.535045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.133 3.867 3 N -0.475 5.475 4 C 0.308 3.692 5 O -0.462 6.462 6 C -0.009 4.009 7 C 0.561 3.439 8 O -0.560 6.560 9 N -0.674 5.674 10 C 0.136 3.864 11 C 0.159 3.841 12 H 0.029 0.971 13 C -0.121 4.121 14 C -0.102 4.102 15 C -0.135 4.135 16 C 0.180 3.820 17 N -0.600 5.600 18 C -0.234 4.234 19 H 0.054 0.946 20 C -0.023 4.023 21 N -0.916 5.916 22 Si 0.929 3.071 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.290 1.290 26 N -0.409 5.409 27 C 0.060 3.940 28 C -0.100 4.100 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.119 0.881 32 H 0.418 0.582 33 H 0.417 0.583 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.001 0.999 43 H 0.048 0.952 44 H 0.248 0.752 45 H 0.087 0.913 46 H 0.126 0.874 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.907 4.010 -5.869 9.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.011 4.011 3 N -0.200 5.200 4 C 0.127 3.873 5 O -0.270 6.270 6 C -0.150 4.150 7 C 0.345 3.655 8 O -0.440 6.440 9 N -0.323 5.323 10 C 0.013 3.987 11 C 0.053 3.947 12 H 0.047 0.953 13 C -0.160 4.160 14 C -0.140 4.140 15 C -0.174 4.174 16 C 0.055 3.945 17 N -0.325 5.325 18 C -0.364 4.364 19 H 0.072 0.928 20 C -0.220 4.220 21 N -0.562 5.562 22 Si 0.760 3.240 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.217 1.217 26 N -0.128 5.128 27 C -0.085 4.085 28 C -0.157 4.157 29 H 0.125 0.875 30 H 0.109 0.891 31 H 0.137 0.863 32 H 0.280 0.720 33 H 0.255 0.745 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.019 0.981 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.106 0.894 46 H 0.144 0.856 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.416 4.676 -6.391 10.192 hybrid contribution -0.482 0.031 1.681 1.749 sum -6.898 4.707 -4.710 9.588 Atomic orbital electron populations 1.21117 0.83261 1.06230 1.05562 1.23063 1.00603 0.86598 0.90870 1.68050 1.07401 1.31168 1.13381 1.19979 0.87469 0.86244 0.93637 1.84656 1.73005 1.34212 1.35145 1.22334 0.95884 0.90319 1.06498 1.17715 0.85528 0.84409 0.77869 1.90723 1.68570 1.31953 1.52799 1.45930 1.07928 1.08564 1.69849 1.21395 0.78923 0.97467 1.00927 1.20888 0.94154 0.90202 0.89422 0.95292 1.21885 0.94523 0.97645 1.01965 1.21343 1.00324 0.95465 0.96861 1.22051 0.97405 1.00101 0.97853 1.20551 0.90341 0.85029 0.98599 1.44239 1.50552 1.14898 1.22770 1.19086 1.08283 0.91530 1.17547 0.92799 1.25378 0.97949 0.96908 1.01793 1.70101 1.36329 1.09014 1.40785 0.85803 0.78874 0.77702 0.81666 1.21256 1.21733 1.21709 1.68281 1.10094 1.27912 1.06493 1.22882 0.89382 0.99027 0.97181 1.20949 1.00159 0.90069 1.04547 0.87549 0.89098 0.86296 0.71962 0.74517 0.90448 0.93021 0.89929 0.92580 0.92492 0.90596 0.91653 0.93500 0.98135 0.93387 0.94238 0.89406 0.85567 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 9.78 71.24 0.70 -0.70 16 2 C 0.13 3.34 6.79 42.64 0.29 3.63 16 3 N -0.47 -14.55 10.44 -295.25 -3.08 -17.63 16 4 C 0.31 10.79 7.78 85.06 0.66 11.45 16 5 O -0.46 -15.30 11.64 -66.26 -0.77 -16.07 16 6 C -0.01 -0.36 6.77 41.99 0.28 -0.07 16 7 C 0.56 23.69 7.80 86.78 0.68 24.37 16 8 O -0.56 -24.87 15.17 17.00 0.26 -24.62 16 9 N -0.67 -28.37 3.87 -465.97 -1.80 -30.17 16 10 C 0.14 5.31 4.43 86.38 0.38 5.69 16 11 C 0.16 6.16 3.00 44.98 0.14 6.29 16 12 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 13 C -0.12 -3.78 5.37 30.67 0.16 -3.62 16 14 C -0.10 -3.05 5.88 30.62 0.18 -2.87 16 15 C -0.14 -4.79 6.08 30.67 0.19 -4.60 16 16 C 0.18 8.19 5.26 86.36 0.45 8.64 16 17 N -0.60 -27.86 2.97 -675.19 -2.00 -29.86 16 18 C -0.23 -12.05 6.98 84.03 0.59 -11.46 16 19 H 0.05 2.91 5.90 -2.91 -0.02 2.90 16 20 C -0.02 -1.24 4.95 84.86 0.42 -0.82 16 21 N -0.92 -50.77 11.32 21.65 0.25 -50.53 16 22 Si 0.93 44.73 29.58 68.60 2.03 46.75 16 23 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 26 N -0.41 -15.22 9.62 -172.25 -1.66 -16.88 16 27 C 0.06 1.74 6.78 42.69 0.29 2.03 16 28 C -0.10 -2.06 9.77 71.24 0.70 -1.37 16 29 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.12 0.87 5.93 -2.38 -0.01 0.86 16 32 H 0.42 10.52 9.06 -74.06 -0.67 9.85 16 33 H 0.42 18.96 6.79 -92.71 -0.63 18.33 16 34 H 0.08 2.69 8.14 -2.39 -0.02 2.68 16 35 H 0.05 2.18 7.38 -2.39 -0.02 2.16 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 43 H 0.05 2.49 6.27 -2.39 -0.01 2.48 16 44 H 0.25 13.47 8.31 -92.71 -0.77 12.70 16 45 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.13 1.39 5.93 -2.38 -0.01 1.37 16 47 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -69.67 374.76 -0.96 -70.63 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: -0.28 Total: 31.77 kcal Atomic # 6 Polarization: 30.49 SS G_CDS: 6.10 Total: 36.59 kcal Atomic # 7 Polarization: -136.77 SS G_CDS: -8.30 Total: -145.07 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -0.51 Total: -40.68 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -69.67 -0.96 -70.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024507003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.448 kcal (2) G-P(sol) polarization free energy of solvation -69.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds