Wall clock time and date at job start Tue Mar 31 2020 19:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32175 * 119.13953 * 2 1 4 4 C 1.32362 * 120.60242 * 180.02562 * 3 2 1 5 5 C 1.47505 * 120.50714 * 179.97438 * 4 3 2 6 6 O 1.21596 * 119.99936 * 188.44214 * 5 4 3 7 7 N 1.34770 * 119.99926 * 8.44678 * 5 4 3 8 8 C 1.46931 * 120.63329 * 9.72240 * 7 5 4 9 9 C 1.53191 * 108.77440 * 126.36936 * 8 7 5 10 10 C 1.53044 * 109.31367 * 54.64034 * 9 8 7 11 11 C 1.53041 * 109.53731 * 298.63396 * 10 9 8 12 12 H 1.09001 * 109.49300 * 301.38151 * 11 10 9 13 13 N 1.46494 * 109.50033 * 181.31845 * 11 10 9 14 14 C 1.46507 * 119.99570 * 299.99563 * 13 11 10 15 15 C 1.36933 * 120.00623 * 119.99542 * 13 11 10 16 16 H 1.08004 * 119.99402 * 19.86150 * 15 13 11 17 17 C 1.38803 * 120.00652 * 199.86165 * 15 13 11 18 18 N 1.31621 * 119.99901 * 19.47968 * 17 15 13 19 19 Si 1.86805 * 120.00368 * 199.48614 * 17 15 13 20 20 H 1.48497 * 109.47167 * 89.99918 * 19 17 15 21 21 H 1.48500 * 109.47118 * 209.99962 * 19 17 15 22 22 H 1.48501 * 109.46665 * 329.99516 * 19 17 15 23 23 C 1.46931 * 120.63035 * 189.70382 * 7 5 4 24 24 C 1.46672 * 118.98432 * 0.25325 * 4 3 2 25 25 O 1.21863 * 120.78397 * 179.72304 * 24 4 3 26 26 N 1.35156 * 118.43017 * 359.46456 * 24 4 3 27 27 H 0.96996 * 120.36522 * 180.23960 * 26 24 4 28 28 C 1.34894 * 119.26048 * 0.55857 * 26 24 4 29 29 C 1.50700 * 119.49435 * 179.70480 * 28 26 24 30 30 H 1.08997 * 109.47489 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.47016 * 120.00096 * 1 2 3 32 32 H 1.08994 * 109.47247 * 239.99570 * 1 2 3 33 33 H 1.08997 * 109.58394 * 6.58645 * 8 7 5 34 34 H 1.08995 * 109.70413 * 246.22876 * 8 7 5 35 35 H 1.08995 * 109.49824 * 294.68565 * 9 8 7 36 36 H 1.09001 * 109.52329 * 174.60298 * 9 8 7 37 37 H 1.08997 * 109.46314 * 178.60920 * 10 9 8 38 38 H 1.08998 * 109.46070 * 58.64911 * 10 9 8 39 39 H 1.09000 * 109.46865 * 95.42709 * 14 13 11 40 40 H 1.09002 * 109.47005 * 215.42187 * 14 13 11 41 41 H 1.08994 * 109.47147 * 335.42786 * 14 13 11 42 42 H 0.97002 * 120.00226 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.58826 * 113.84154 * 23 7 5 44 44 H 1.08999 * 109.58732 * 353.41255 * 23 7 5 45 45 H 1.08999 * 109.47574 * 269.97587 * 29 28 26 46 46 H 1.08993 * 109.47652 * 29.97988 * 29 28 26 47 47 H 1.09009 * 109.46850 * 149.98006 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1545 0.0000 4 6 3.4738 1.1883 -0.0005 5 6 4.1899 2.4778 -0.0011 6 8 5.3956 2.5036 -0.1561 7 7 3.5078 3.6274 0.1704 8 6 2.0937 3.6067 0.5688 9 6 1.9199 4.4797 1.8156 10 6 2.4733 5.8787 1.5350 11 6 3.9671 5.7838 1.2162 12 1 4.4900 5.3269 2.0565 13 7 4.5027 7.1265 0.9787 14 6 3.9615 7.9497 -0.1057 15 6 5.5091 7.6121 1.7701 16 1 6.1234 6.9314 2.3409 17 6 5.7399 8.9791 1.8388 18 7 4.7982 9.8245 1.4767 19 14 7.3869 9.6192 2.4449 20 1 8.3125 9.7721 1.2939 21 1 7.1942 10.9361 3.1035 22 1 7.9631 8.6580 3.4193 23 6 4.1642 4.9255 -0.0373 24 6 4.2170 -0.0762 -0.0067 25 8 5.4356 -0.0833 -0.0125 26 7 3.5185 -1.2332 -0.0007 27 1 3.9815 -2.0855 -0.0010 28 6 2.1702 -1.1894 -0.0006 29 6 1.3861 -2.4764 -0.0006 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 -0.3633 -0.5139 0.8899 33 1 1.7926 2.5836 0.7943 34 1 1.4780 3.9988 -0.2406 35 1 2.4620 4.0346 2.6499 36 1 0.8614 4.5507 2.0659 37 1 2.3285 6.5092 2.4123 38 1 1.9475 6.3134 0.6849 39 1 3.1953 8.6155 0.2914 40 1 4.7633 8.5411 -0.5477 41 1 3.5233 7.3048 -0.8673 42 1 4.9596 10.7798 1.5244 43 1 3.7192 5.4266 -0.8969 44 1 5.2292 4.7726 -0.2117 45 1 1.1966 -2.7865 -1.0282 46 1 1.9571 -3.2498 0.5129 47 1 0.4372 -2.3236 0.5137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027461032.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:58 Heat of formation + Delta-G solvation = 16.367122 kcal Electronic energy + Delta-G solvation = -29772.681639 eV Core-core repulsion = 25764.656299 eV Total energy + Delta-G solvation = -4008.025340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -42.09408 -39.64356 -38.29247 -37.18454 -35.87383 -34.86353 -33.49288 -32.09545 -31.17944 -29.72877 -28.64306 -27.18913 -25.92541 -25.21900 -24.80243 -23.64858 -22.77999 -21.48625 -20.22473 -19.08589 -18.75228 -18.17491 -16.88338 -16.64925 -16.54848 -15.87076 -15.63266 -14.99655 -14.69860 -14.49890 -14.39174 -14.06452 -13.85520 -13.62718 -13.57022 -13.54311 -13.38525 -13.04649 -12.58993 -12.48786 -12.42603 -12.32751 -12.11005 -11.90273 -11.62144 -11.49284 -10.94225 -10.76274 -10.73919 -10.51091 -10.35044 -10.18676 -10.04415 -9.94612 -9.76827 -9.64952 -9.03735 -8.51918 -8.37517 -8.09960 -6.69567 -5.65103 -3.06097 -0.17489 1.34517 2.06562 2.62339 3.14903 3.47467 3.52446 3.53791 3.55952 3.61695 3.87695 3.91054 4.25638 4.59567 4.65236 4.68438 4.85898 5.05080 5.08367 5.20216 5.27560 5.37286 5.45975 5.46808 5.59374 5.66037 5.74267 5.86332 5.93692 5.97394 6.03830 6.15368 6.24829 6.35541 6.39424 6.54198 6.64542 6.77908 6.92808 7.06751 7.12751 7.17086 7.42742 7.47125 7.75042 7.77143 7.91456 8.42233 8.48451 9.31114 9.95632 10.43300 11.40077 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021946 B = 0.002884 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.530681 B = 9705.515475 C =10580.591463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.038 4.038 3 N -0.343 5.343 4 C 0.019 3.981 5 C 0.573 3.427 6 O -0.510 6.510 7 N -0.585 5.585 8 C 0.083 3.917 9 C -0.133 4.133 10 C -0.132 4.132 11 C 0.170 3.830 12 H 0.065 0.935 13 N -0.592 5.592 14 C 0.160 3.840 15 C -0.252 4.252 16 H 0.070 0.930 17 C 0.001 3.999 18 N -0.904 5.904 19 Si 0.901 3.099 20 H -0.288 1.288 21 H -0.293 1.293 22 H -0.280 1.280 23 C 0.097 3.903 24 C 0.496 3.504 25 O -0.480 6.480 26 N -0.587 5.587 27 H 0.421 0.579 28 C 0.151 3.849 29 C -0.131 4.131 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.031 0.969 40 H 0.039 0.961 41 H 0.002 0.998 42 H 0.251 0.749 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.081 0.919 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.530 -26.700 -3.809 31.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.163 4.163 3 N -0.061 5.061 4 C -0.149 4.149 5 C 0.358 3.642 6 O -0.383 6.383 7 N -0.318 5.318 8 C -0.039 4.039 9 C -0.172 4.172 10 C -0.172 4.172 11 C 0.061 3.939 12 H 0.083 0.917 13 N -0.313 5.313 14 C 0.015 3.985 15 C -0.382 4.382 16 H 0.088 0.912 17 C -0.197 4.197 18 N -0.549 5.549 19 Si 0.731 3.269 20 H -0.215 1.215 21 H -0.220 1.220 22 H -0.205 1.205 23 C -0.026 4.026 24 C 0.288 3.712 25 O -0.350 6.350 26 N -0.223 5.223 27 H 0.261 0.739 28 C 0.036 3.964 29 C -0.188 4.188 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.145 0.855 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.020 0.980 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.116 0.884 46 H 0.100 0.900 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.611 -25.673 -3.905 29.797 hybrid contribution 1.329 -0.577 0.322 1.484 sum -13.282 -26.250 -3.583 29.637 Atomic orbital electron populations 1.20533 0.86885 1.04600 1.02236 1.20314 0.98074 0.85895 1.12014 1.67793 1.08346 1.27627 1.02308 1.24122 0.88809 0.94132 1.07833 1.17086 0.86227 0.81966 0.78919 1.90892 1.12607 1.85791 1.49044 1.47950 1.12270 1.05359 1.66223 1.22716 0.80749 1.03949 0.96516 1.21978 1.00640 0.96946 0.97679 1.22128 0.98200 0.94998 1.01841 1.20572 0.92292 0.86646 0.94436 0.91670 1.43925 1.41460 1.11576 1.34384 1.20781 0.97841 0.92159 0.87727 1.19252 1.06077 0.90389 1.22469 0.91249 1.24879 0.97904 0.96147 1.00769 1.70121 1.30692 1.01434 1.52691 0.86300 0.84308 0.77978 0.78310 1.21532 1.21952 1.20494 1.22477 0.99056 0.80960 1.00096 1.19061 0.88447 0.83898 0.79818 1.91079 1.11404 1.85186 1.47352 1.43739 1.06392 1.11976 1.60216 0.73925 1.21493 0.83515 0.98955 0.92435 1.21230 1.00955 0.91811 1.04834 0.89817 0.90851 0.90766 0.85536 0.91875 0.92256 0.91493 0.91689 0.92528 0.95074 0.94222 0.97976 0.93880 0.91613 0.89149 0.88439 0.89980 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 8.82 36.00 0.32 -0.02 16 2 C -0.04 -0.28 6.70 -83.18 -0.56 -0.84 16 3 N -0.34 -3.87 6.19 -4.85 -0.03 -3.90 16 4 C 0.02 0.28 6.77 -80.46 -0.54 -0.26 16 5 C 0.57 10.67 7.63 -12.49 -0.10 10.58 16 6 O -0.51 -11.60 14.99 -14.99 -0.22 -11.83 16 7 N -0.58 -10.20 2.97 -174.00 -0.52 -10.72 16 8 C 0.08 1.16 5.85 -3.71 -0.02 1.14 16 9 C -0.13 -1.94 6.08 -26.61 -0.16 -2.10 16 10 C -0.13 -2.45 5.15 -26.69 -0.14 -2.59 16 11 C 0.17 3.68 2.74 -67.81 -0.19 3.50 16 12 H 0.07 1.51 7.85 -51.93 -0.41 1.11 16 13 N -0.59 -15.29 2.82 -173.35 -0.49 -15.78 16 14 C 0.16 3.99 8.06 59.85 0.48 4.47 16 15 C -0.25 -7.23 9.59 -15.06 -0.14 -7.37 16 16 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 17 C 0.00 0.03 4.97 -17.43 -0.09 -0.05 16 18 N -0.90 -26.95 10.91 55.49 0.61 -26.34 16 19 Si 0.90 22.78 29.60 -169.99 -5.03 17.75 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 C 0.10 1.95 5.80 -3.71 -0.02 1.92 16 24 C 0.50 6.90 7.92 -12.69 -0.10 6.80 16 25 O -0.48 -8.77 16.43 -15.22 -0.25 -9.02 16 26 N -0.59 -4.63 5.29 -9.45 -0.05 -4.68 16 27 H 0.42 2.06 8.81 -40.82 -0.36 1.71 16 28 C 0.15 0.85 6.78 -81.98 -0.56 0.29 16 29 C -0.13 -0.11 9.59 36.01 0.35 0.23 16 30 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.07 0.17 8.09 -51.93 -0.42 -0.25 16 32 H 0.07 0.15 7.36 -51.93 -0.38 -0.23 16 33 H 0.13 1.58 4.16 -76.87 -0.32 1.26 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.06 1.04 7.72 -51.93 -0.40 0.64 16 39 H 0.03 0.83 7.39 -51.93 -0.38 0.45 16 40 H 0.04 1.07 7.32 -51.93 -0.38 0.69 16 41 H 0.00 0.04 6.36 -51.93 -0.33 -0.29 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.07 1.28 6.50 -51.93 -0.34 0.94 16 44 H 0.09 2.03 7.01 -51.93 -0.36 1.67 16 45 H 0.10 -0.02 8.14 -51.93 -0.42 -0.44 16 46 H 0.08 -0.02 8.14 -51.93 -0.42 -0.45 16 47 H 0.10 -0.04 6.44 -51.92 -0.33 -0.37 16 LS Contribution 371.06 15.07 5.59 5.59 Total: -1.00 -37.85 371.06 -8.78 -46.64 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -6.92 Total: -3.41 kcal Atomic # 6 Polarization: 17.17 SS G_CDS: -1.47 Total: 15.70 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -0.48 Total: -61.42 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.47 Total: -20.85 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.03 Total: 17.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.85 -8.78 -46.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027461032.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.004 kcal (2) G-P(sol) polarization free energy of solvation -37.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds