Wall clock time and date at job start Tue Mar 31 2020 19:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32175 * 119.13953 * 2 1 4 4 C 1.32362 * 120.60242 * 180.02562 * 3 2 1 5 5 C 1.47505 * 120.50714 * 179.97438 * 4 3 2 6 6 O 1.21596 * 119.99936 * 188.44214 * 5 4 3 7 7 N 1.34770 * 119.99926 * 8.44678 * 5 4 3 8 8 C 1.46931 * 120.63329 * 9.72240 * 7 5 4 9 9 C 1.53191 * 108.77440 * 126.36936 * 8 7 5 10 10 C 1.53044 * 109.31367 * 54.64034 * 9 8 7 11 11 C 1.53041 * 109.53731 * 298.63396 * 10 9 8 12 12 H 1.09001 * 109.49300 * 301.38151 * 11 10 9 13 13 N 1.46494 * 109.50033 * 181.31845 * 11 10 9 14 14 C 1.46507 * 119.99570 * 299.99563 * 13 11 10 15 15 C 1.36933 * 120.00623 * 119.99542 * 13 11 10 16 16 H 1.08004 * 119.99402 * 19.86150 * 15 13 11 17 17 C 1.38803 * 120.00652 * 199.86165 * 15 13 11 18 18 N 1.31621 * 119.99901 * 19.47968 * 17 15 13 19 19 Si 1.86805 * 120.00368 * 199.48614 * 17 15 13 20 20 H 1.48497 * 109.47167 * 89.99918 * 19 17 15 21 21 H 1.48500 * 109.47118 * 209.99962 * 19 17 15 22 22 H 1.48501 * 109.46665 * 329.99516 * 19 17 15 23 23 C 1.46931 * 120.63035 * 189.70382 * 7 5 4 24 24 C 1.46672 * 118.98432 * 0.25325 * 4 3 2 25 25 O 1.21863 * 120.78397 * 179.72304 * 24 4 3 26 26 N 1.35156 * 118.43017 * 359.46456 * 24 4 3 27 27 H 0.96996 * 120.36522 * 180.23960 * 26 24 4 28 28 C 1.34894 * 119.26048 * 0.55857 * 26 24 4 29 29 C 1.50700 * 119.49435 * 179.70480 * 28 26 24 30 30 H 1.08997 * 109.47489 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.47016 * 120.00096 * 1 2 3 32 32 H 1.08994 * 109.47247 * 239.99570 * 1 2 3 33 33 H 1.08997 * 109.58394 * 6.58645 * 8 7 5 34 34 H 1.08995 * 109.70413 * 246.22876 * 8 7 5 35 35 H 1.08995 * 109.49824 * 294.68565 * 9 8 7 36 36 H 1.09001 * 109.52329 * 174.60298 * 9 8 7 37 37 H 1.08997 * 109.46314 * 178.60920 * 10 9 8 38 38 H 1.08998 * 109.46070 * 58.64911 * 10 9 8 39 39 H 1.09000 * 109.46865 * 95.42709 * 14 13 11 40 40 H 1.09002 * 109.47005 * 215.42187 * 14 13 11 41 41 H 1.08994 * 109.47147 * 335.42786 * 14 13 11 42 42 H 0.97002 * 120.00226 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.58826 * 113.84154 * 23 7 5 44 44 H 1.08999 * 109.58732 * 353.41255 * 23 7 5 45 45 H 1.08999 * 109.47574 * 269.97587 * 29 28 26 46 46 H 1.08993 * 109.47652 * 29.97988 * 29 28 26 47 47 H 1.09009 * 109.46850 * 149.98006 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1545 0.0000 4 6 3.4738 1.1883 -0.0005 5 6 4.1899 2.4778 -0.0011 6 8 5.3956 2.5036 -0.1561 7 7 3.5078 3.6274 0.1704 8 6 2.0937 3.6067 0.5688 9 6 1.9199 4.4797 1.8156 10 6 2.4733 5.8787 1.5350 11 6 3.9671 5.7838 1.2162 12 1 4.4900 5.3269 2.0565 13 7 4.5027 7.1265 0.9787 14 6 3.9615 7.9497 -0.1057 15 6 5.5091 7.6121 1.7701 16 1 6.1234 6.9314 2.3409 17 6 5.7399 8.9791 1.8388 18 7 4.7982 9.8245 1.4767 19 14 7.3869 9.6192 2.4449 20 1 8.3125 9.7721 1.2939 21 1 7.1942 10.9361 3.1035 22 1 7.9631 8.6580 3.4193 23 6 4.1642 4.9255 -0.0373 24 6 4.2170 -0.0762 -0.0067 25 8 5.4356 -0.0833 -0.0125 26 7 3.5185 -1.2332 -0.0007 27 1 3.9815 -2.0855 -0.0010 28 6 2.1702 -1.1894 -0.0006 29 6 1.3861 -2.4764 -0.0006 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 -0.3633 -0.5139 0.8899 33 1 1.7926 2.5836 0.7943 34 1 1.4780 3.9988 -0.2406 35 1 2.4620 4.0346 2.6499 36 1 0.8614 4.5507 2.0659 37 1 2.3285 6.5092 2.4123 38 1 1.9475 6.3134 0.6849 39 1 3.1953 8.6155 0.2914 40 1 4.7633 8.5411 -0.5477 41 1 3.5233 7.3048 -0.8673 42 1 4.9596 10.7798 1.5244 43 1 3.7192 5.4266 -0.8969 44 1 5.2292 4.7726 -0.2117 45 1 1.1966 -2.7865 -1.0282 46 1 1.9571 -3.2498 0.5129 47 1 0.4372 -2.3236 0.5137 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027461032.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:57 Heat of formation + Delta-G solvation = -11.307350 kcal Electronic energy + Delta-G solvation = -29773.881694 eV Core-core repulsion = 25764.656299 eV Total energy + Delta-G solvation = -4009.225395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.95106 -41.00900 -39.30165 -38.74063 -36.93071 -36.46733 -34.26171 -33.69626 -32.87136 -30.71461 -29.84137 -28.10159 -28.00162 -26.24601 -25.75945 -25.24403 -23.87952 -23.01096 -21.50107 -20.34142 -19.82842 -19.22697 -18.75684 -17.89790 -17.42128 -17.17832 -16.99991 -16.62938 -16.14129 -15.83084 -15.42872 -15.12854 -15.07656 -14.97650 -14.79893 -14.48840 -14.14996 -14.01282 -13.89545 -13.73526 -13.63777 -13.56432 -12.96967 -12.88763 -12.74801 -12.67552 -12.57549 -12.40598 -12.34031 -12.30204 -12.04717 -11.92171 -11.78292 -11.57958 -11.39694 -11.32579 -10.67518 -10.09135 -9.72659 -9.06595 -8.79376 -7.86534 -5.30157 -0.98815 0.50421 1.22503 1.42193 1.45102 1.52117 1.53412 1.98503 2.48757 2.50528 2.87652 2.99814 3.24456 3.43887 3.61336 3.71183 3.77069 3.98401 4.11674 4.22852 4.31029 4.36604 4.54897 4.62684 4.69654 4.72578 4.75747 4.80664 4.90246 4.94680 5.01232 5.05816 5.11182 5.12964 5.15788 5.23982 5.28145 5.29224 5.43677 5.49518 5.57391 5.61330 5.67581 5.68208 6.28513 6.32808 6.47153 6.59731 7.09997 7.12890 7.83854 8.26247 9.16271 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021946 B = 0.002884 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.530681 B = 9705.515475 C =10580.591463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.051 4.051 3 N -0.325 5.325 4 C -0.061 4.061 5 C 0.569 3.431 6 O -0.574 6.574 7 N -0.588 5.588 8 C 0.086 3.914 9 C -0.123 4.123 10 C -0.120 4.120 11 C 0.169 3.831 12 H 0.038 0.962 13 N -0.608 5.608 14 C 0.177 3.823 15 C -0.268 4.268 16 H 0.058 0.942 17 C -0.046 4.046 18 N -0.929 5.929 19 Si 0.963 3.037 20 H -0.287 1.287 21 H -0.288 1.288 22 H -0.275 1.275 23 C 0.113 3.887 24 C 0.491 3.509 25 O -0.544 6.544 26 N -0.563 5.563 27 H 0.439 0.561 28 C 0.203 3.797 29 C -0.134 4.134 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.149 0.851 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.106 0.894 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.012 0.988 40 H 0.011 0.989 41 H 0.034 0.966 42 H 0.250 0.750 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.127 0.873 46 H 0.104 0.896 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.830 -30.870 -3.884 36.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.181 4.181 3 N -0.044 5.044 4 C -0.220 4.220 5 C 0.357 3.643 6 O -0.452 6.452 7 N -0.320 5.320 8 C -0.035 4.035 9 C -0.162 4.162 10 C -0.160 4.160 11 C 0.061 3.939 12 H 0.056 0.944 13 N -0.331 5.331 14 C 0.032 3.968 15 C -0.399 4.399 16 H 0.076 0.924 17 C -0.242 4.242 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.215 1.215 21 H -0.214 1.214 22 H -0.200 1.200 23 C -0.012 4.012 24 C 0.286 3.714 25 O -0.422 6.422 26 N -0.197 5.197 27 H 0.282 0.718 28 C 0.084 3.916 29 C -0.190 4.190 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.165 0.835 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.125 0.875 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.145 0.855 46 H 0.123 0.877 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.928 -29.856 -3.971 35.573 hybrid contribution 2.354 0.309 0.325 2.397 sum -16.574 -29.547 -3.645 34.074 Atomic orbital electron populations 1.20753 0.83366 1.05144 1.04962 1.21213 1.00097 0.85261 1.11573 1.67505 1.06768 1.30093 0.99985 1.22966 0.89731 0.92234 1.17067 1.17699 0.85806 0.83515 0.77246 1.90827 1.15422 1.86959 1.52019 1.48000 1.13486 1.04082 1.66475 1.22985 0.78713 1.05236 0.96572 1.21951 1.02540 0.93915 0.97768 1.21937 0.95536 0.97516 1.01003 1.20670 0.94166 0.84748 0.94300 0.94357 1.44110 1.41600 1.12932 1.34446 1.20527 0.96225 0.92081 0.87976 1.19443 1.07026 0.90693 1.22693 0.92400 1.25581 1.00894 0.96197 1.01529 1.70241 1.32057 1.01397 1.53795 0.85331 0.80356 0.77391 0.77784 1.21451 1.21378 1.19983 1.21995 0.97479 0.82509 0.99195 1.18987 0.87778 0.85105 0.79498 1.91034 1.13868 1.86144 1.51133 1.43703 1.07553 1.11340 1.57128 0.71796 1.22551 0.82321 1.01199 0.85529 1.21631 1.01373 0.88871 1.07160 0.90608 0.88131 0.87838 0.83460 0.90223 0.93090 0.87543 0.93830 0.91924 0.96981 0.96977 0.94715 0.94056 0.90897 0.92789 0.85527 0.87748 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.13 8.82 71.23 0.63 0.50 16 2 C -0.05 -0.53 6.70 42.03 0.28 -0.25 16 3 N -0.33 -6.70 6.19 -169.25 -1.05 -7.75 16 4 C -0.06 -1.84 6.77 43.71 0.30 -1.54 16 5 C 0.57 22.94 7.63 86.69 0.66 23.60 16 6 O -0.57 -29.11 14.99 15.36 0.23 -28.88 16 7 N -0.59 -21.56 2.97 -822.68 -2.45 -24.01 16 8 C 0.09 2.30 5.85 86.36 0.51 2.81 16 9 C -0.12 -3.43 6.08 30.67 0.19 -3.25 16 10 C -0.12 -4.53 5.15 30.62 0.16 -4.37 16 11 C 0.17 7.77 2.74 45.07 0.12 7.90 16 12 H 0.04 1.93 7.85 -2.39 -0.02 1.91 16 13 N -0.61 -33.12 2.82 -702.35 -1.98 -35.10 16 14 C 0.18 9.18 8.06 127.77 1.03 10.21 16 15 C -0.27 -16.17 9.59 84.03 0.81 -15.37 16 16 H 0.06 3.53 7.83 -2.91 -0.02 3.51 16 17 C -0.05 -2.76 4.97 84.86 0.42 -2.34 16 18 N -0.93 -57.10 10.91 21.65 0.24 -56.86 16 19 Si 0.96 48.43 29.60 68.60 2.03 50.46 16 20 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 21 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 22 H -0.27 -13.47 7.11 99.48 0.71 -12.77 16 23 C 0.11 4.82 5.80 86.36 0.50 5.32 16 24 C 0.49 14.02 7.92 86.39 0.68 14.71 16 25 O -0.54 -21.56 16.43 14.51 0.24 -21.33 16 26 N -0.56 -7.35 5.29 -301.76 -1.60 -8.94 16 27 H 0.44 2.89 8.81 -92.71 -0.82 2.07 16 28 C 0.20 1.20 6.78 41.61 0.28 1.49 16 29 C -0.13 0.82 9.59 71.24 0.68 1.50 16 30 H 0.07 0.33 8.10 -2.39 -0.02 0.31 16 31 H 0.10 -0.30 8.09 -2.38 -0.02 -0.32 16 32 H 0.10 -0.37 7.36 -2.39 -0.02 -0.39 16 33 H 0.15 3.39 4.16 -51.64 -0.21 3.18 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.06 2.28 7.72 -2.39 -0.02 2.26 16 39 H 0.01 0.66 7.39 -2.39 -0.02 0.65 16 40 H 0.01 0.66 7.32 -2.39 -0.02 0.64 16 41 H 0.03 1.54 6.36 -2.39 -0.02 1.52 16 42 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 43 H 0.07 2.95 6.50 -2.39 -0.02 2.94 16 44 H 0.05 2.68 7.01 -2.39 -0.02 2.67 16 45 H 0.13 -1.15 8.14 -2.39 -0.02 -1.17 16 46 H 0.10 -0.88 8.14 -2.39 -0.02 -0.90 16 47 H 0.13 -1.28 6.44 -2.38 -0.02 -1.30 16 Total: -1.00 -95.24 371.06 2.90 -92.33 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: -0.01 Total: -0.85 kcal Atomic # 6 Polarization: 33.68 SS G_CDS: 7.25 Total: 40.92 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -6.83 Total: -132.67 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: 0.47 Total: -50.21 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.46 kcal Total: -95.24 2.90 -92.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027461032.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.028 kcal (2) G-P(sol) polarization free energy of solvation -95.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds