Wall clock time and date at job start Tue Mar 31 2020 18:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30446 * 125.98802 * 2 1 4 4 N 1.39936 * 108.89761 * 180.02562 * 3 2 1 5 5 C 1.46498 * 125.75443 * 179.97438 * 4 3 2 6 6 H 1.09001 * 110.45901 * 27.62636 * 5 4 3 7 7 C 1.54512 * 110.50846 * 265.02473 * 5 4 3 8 8 C 1.54474 * 104.06442 * 241.35561 * 7 5 4 9 9 O 1.44428 * 104.80239 * 23.97767 * 8 7 5 10 10 C 1.44423 * 105.27766 * 319.49172 * 9 8 7 11 11 C 1.34256 * 108.49108 * 0.02562 * 4 3 2 12 12 C 1.38050 * 107.41860 * 0.02562 * 11 4 3 13 13 C 1.47421 * 126.41600 * 180.26060 * 12 11 4 14 14 O 1.21607 * 120.00044 * 179.68675 * 13 12 11 15 15 N 1.34776 * 120.00153 * 359.68830 * 13 12 11 16 16 C 1.46502 * 120.00192 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47260 * 180.02562 * 16 15 13 18 18 C 1.53953 * 113.74106 * 271.67735 * 17 16 15 19 19 N 1.47585 * 86.11480 * 222.04711 * 18 17 16 20 20 C 1.36941 * 134.49110 * 204.64586 * 19 18 17 21 21 H 1.07993 * 119.99948 * 173.48536 * 20 19 18 22 22 C 1.38815 * 119.99769 * 353.47146 * 20 19 18 23 23 N 1.31621 * 120.00137 * 5.07428 * 22 20 19 24 24 Si 1.86798 * 119.99889 * 185.06817 * 22 20 19 25 25 H 1.48504 * 109.47045 * 94.99030 * 24 22 20 26 26 H 1.48496 * 109.47454 * 214.99266 * 24 22 20 27 27 H 1.48501 * 109.47403 * 334.99385 * 24 22 20 28 28 C 1.47581 * 91.01494 * 24.63931 * 19 18 17 29 29 H 1.09000 * 109.46866 * 269.99260 * 1 2 3 30 30 H 1.09006 * 109.47077 * 29.99044 * 1 2 3 31 31 H 1.08994 * 109.47051 * 149.99648 * 1 2 3 32 32 H 1.08994 * 110.51389 * 359.97438 * 7 5 4 33 33 H 1.09007 * 110.50777 * 122.71183 * 7 5 4 34 34 H 1.08994 * 110.37759 * 142.80790 * 8 7 5 35 35 H 1.09001 * 110.37333 * 265.04093 * 8 7 5 36 36 H 1.09004 * 110.37148 * 281.67814 * 10 9 8 37 37 H 1.08998 * 110.37413 * 159.34397 * 10 9 8 38 38 H 1.08004 * 126.29416 * 180.02562 * 11 4 3 39 39 H 0.96998 * 120.00204 * 359.97438 * 15 13 12 40 40 H 1.09002 * 109.47468 * 299.99951 * 16 15 13 41 41 H 1.08998 * 109.47178 * 60.00026 * 16 15 13 42 42 H 1.08999 * 112.94396 * 43.40691 * 17 16 15 43 43 H 1.08997 * 113.76876 * 336.34252 * 18 17 16 44 44 H 1.09002 * 113.76747 * 107.74430 * 18 17 16 45 45 H 0.97000 * 119.99838 * 179.97438 * 23 22 20 46 46 H 1.09003 * 113.76767 * 221.05803 * 28 19 18 47 47 H 1.08996 * 113.86854 * 89.67445 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 -0.0006 5 6 4.7787 1.5291 -0.0013 6 1 4.5361 2.4804 0.4722 7 6 5.2853 1.7557 -1.4433 8 6 6.7228 1.1905 -1.4295 9 8 6.7334 0.2357 -0.3458 10 6 5.9701 0.8536 0.7132 11 6 3.6439 -0.6979 -0.0015 12 6 2.3372 -1.1432 -0.0021 13 6 1.8916 -2.5485 0.0022 14 8 0.7039 -2.8097 0.0069 15 7 2.8004 -3.5437 0.0010 16 6 2.3575 -4.9402 0.0058 17 6 3.5782 -5.8624 0.0039 18 6 4.0929 -6.2065 -1.4057 19 7 4.2575 -7.5833 -0.9003 20 6 5.0488 -8.6453 -1.2487 21 1 5.0535 -9.5376 -0.6404 22 6 5.8447 -8.5748 -2.3838 23 7 5.9156 -7.4534 -3.0693 24 14 6.8151 -10.0715 -2.9384 25 1 6.0369 -10.8147 -3.9618 26 1 8.1090 -9.6343 -3.5215 27 1 7.0710 -10.9554 -1.7729 28 6 3.2271 -7.3558 0.1314 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8901 -0.5137 31 1 -0.3633 -0.8899 -0.5139 32 1 4.6673 1.2092 -2.1556 33 1 5.2954 2.8194 -1.6818 34 1 6.9447 0.6944 -2.3743 35 1 7.4422 1.9876 -1.2421 36 1 6.5740 1.5987 1.2311 37 1 5.6139 0.0988 1.4142 38 1 4.5298 -1.3158 -0.0018 39 1 3.7477 -3.3354 -0.0031 40 1 1.7613 -5.1292 0.8985 41 1 1.7545 -5.1332 -0.8814 42 1 4.3592 -5.5350 0.6902 43 1 3.3364 -6.1121 -2.1847 44 1 5.0326 -5.7171 -1.6619 45 1 6.4720 -7.4042 -3.8623 46 1 3.4755 -7.7842 1.1024 47 1 2.2157 -7.5986 -0.1944 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031670148.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:58 Heat of formation + Delta-G solvation = 27.396191 kcal Electronic energy + Delta-G solvation = -28620.879861 eV Core-core repulsion = 24613.332777 eV Total energy + Delta-G solvation = -4007.547084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.65807 -40.62543 -40.08405 -39.36904 -35.74301 -35.03686 -34.17934 -32.48766 -31.69468 -30.39382 -30.21605 -28.21074 -27.40989 -26.51596 -24.98149 -23.81539 -23.36461 -22.06064 -21.27567 -20.98195 -20.42437 -18.96787 -18.66771 -17.59212 -17.11949 -16.97984 -16.94741 -16.72449 -16.53283 -16.04306 -15.68366 -15.48198 -15.39735 -15.23608 -14.65078 -14.43065 -14.11681 -14.00490 -13.88853 -13.71903 -13.29311 -13.08397 -13.06421 -12.94301 -12.86729 -12.68166 -12.56157 -12.51699 -12.19445 -12.14284 -11.93315 -11.80405 -11.56645 -11.24266 -10.94338 -10.86261 -10.80178 -10.36552 -10.07838 -9.62390 -8.88774 -7.90860 -5.22859 0.44489 1.08064 1.23430 1.45941 1.48089 1.56712 2.30689 2.46243 2.48962 2.79119 3.28288 3.30113 3.39369 3.43472 3.61957 3.66044 3.77647 3.86948 3.92746 4.08629 4.16277 4.26131 4.32604 4.39420 4.44720 4.47829 4.60340 4.65631 4.73337 4.78294 4.80998 4.82046 4.90159 4.91587 4.92026 4.99477 5.00307 5.14033 5.27836 5.47317 5.52380 5.57722 5.65355 5.68118 5.83924 5.95533 6.48282 6.68873 6.93745 7.33504 7.62079 8.58977 9.26774 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011263 B = 0.002819 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.528438 B = 9929.698518 C =11880.123945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.119 3.881 3 N -0.317 5.317 4 N -0.346 5.346 5 C 0.117 3.883 6 H 0.141 0.859 7 C -0.161 4.161 8 C 0.042 3.958 9 O -0.392 6.392 10 C 0.035 3.965 11 C 0.122 3.878 12 C -0.311 4.311 13 C 0.591 3.409 14 O -0.580 6.580 15 N -0.714 5.714 16 C 0.145 3.855 17 C -0.114 4.114 18 C 0.169 3.831 19 N -0.645 5.645 20 C -0.236 4.236 21 H 0.084 0.916 22 C -0.067 4.067 23 N -0.951 5.951 24 Si 0.976 3.024 25 H -0.290 1.290 26 H -0.293 1.293 27 H -0.266 1.266 28 C 0.126 3.874 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.203 0.797 39 H 0.408 0.592 40 H 0.077 0.923 41 H 0.052 0.948 42 H 0.106 0.894 43 H 0.010 0.990 44 H 0.040 0.960 45 H 0.248 0.752 46 H 0.063 0.937 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.747 24.266 8.851 25.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.049 4.049 3 N -0.138 5.138 4 N -0.124 5.124 5 C 0.016 3.984 6 H 0.158 0.842 7 C -0.200 4.200 8 C -0.035 4.035 9 O -0.311 6.311 10 C -0.043 4.043 11 C -0.031 4.031 12 C -0.326 4.326 13 C 0.380 3.620 14 O -0.462 6.462 15 N -0.365 5.365 16 C 0.020 3.980 17 C -0.134 4.134 18 C 0.043 3.957 19 N -0.371 5.371 20 C -0.365 4.365 21 H 0.102 0.898 22 C -0.260 4.260 23 N -0.600 5.600 24 Si 0.804 3.196 25 H -0.218 1.218 26 H -0.220 1.220 27 H -0.190 1.190 28 C 0.000 4.000 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.219 0.781 39 H 0.244 0.756 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.124 0.876 43 H 0.028 0.972 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.081 0.919 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.080 25.057 8.693 26.544 hybrid contribution 0.776 -1.626 -0.975 2.048 sum -0.303 23.431 7.719 24.672 Atomic orbital electron populations 1.20310 0.85042 1.03822 1.03923 1.22733 0.97989 0.88882 0.95246 1.77110 0.86719 1.22629 1.27355 1.48726 1.05513 1.04535 1.53625 1.23205 0.81947 0.94458 0.98792 0.84164 1.23447 0.97149 1.04727 0.94657 1.23652 0.95574 0.92874 0.91369 1.89237 1.73915 1.41855 1.26064 1.24009 0.90017 0.99383 0.90843 1.23346 0.98739 0.85923 0.95060 1.20243 0.93162 0.93782 1.25368 1.17463 0.85219 0.84217 0.75100 1.90700 1.17640 1.84897 1.52929 1.45767 1.10037 1.05718 1.74975 1.21173 0.95883 0.79175 1.01725 1.23419 0.97107 0.94387 0.98488 1.22171 0.96734 0.84339 0.92428 1.46340 1.41294 1.11630 1.37861 1.19446 1.16458 0.94216 1.06358 0.89819 1.25644 1.02368 1.00160 0.97793 1.70014 1.43971 1.26328 1.19703 0.85095 0.77306 0.78921 0.78255 1.21767 1.21982 1.19024 1.22700 0.92089 0.92268 0.92896 0.89504 0.89754 0.90230 0.91623 0.86349 0.88632 0.88997 0.86548 0.87922 0.78069 0.75636 0.90486 0.92982 0.87613 0.97188 0.94131 0.94297 0.91890 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.64 9.92 71.24 0.71 -0.93 16 2 C 0.12 3.07 7.26 43.52 0.32 3.39 16 3 N -0.32 -7.57 12.50 -46.68 -0.58 -8.15 16 4 N -0.35 -6.57 3.48 -320.94 -1.12 -7.68 16 5 C 0.12 1.31 4.24 46.01 0.19 1.51 16 6 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 7 C -0.16 -1.63 6.88 31.61 0.22 -1.42 16 8 C 0.04 0.42 7.63 72.48 0.55 0.98 16 9 O -0.39 -5.93 11.64 -148.98 -1.73 -7.67 16 10 C 0.04 0.33 6.58 72.48 0.48 0.81 16 11 C 0.12 2.51 9.73 84.28 0.82 3.33 16 12 C -0.31 -8.16 6.13 -20.15 -0.12 -8.29 16 13 C 0.59 18.00 7.81 86.66 0.68 18.68 16 14 O -0.58 -21.14 14.92 -4.05 -0.06 -21.20 16 15 N -0.71 -19.73 5.54 -466.38 -2.59 -22.32 16 16 C 0.14 4.44 5.53 86.38 0.48 4.91 16 17 C -0.11 -3.96 3.94 -10.13 -0.04 -4.00 16 18 C 0.17 7.91 6.98 86.48 0.60 8.52 16 19 N -0.64 -33.13 3.70 -716.72 -2.65 -35.78 16 20 C -0.24 -13.37 10.70 84.03 0.90 -12.47 16 21 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 22 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 23 N -0.95 -57.69 11.51 21.65 0.25 -57.44 16 24 Si 0.98 45.94 29.56 68.60 2.03 47.96 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 28 C 0.13 4.91 8.50 86.48 0.74 5.65 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.08 2.09 6.56 -2.39 -0.02 2.07 16 32 H 0.06 1.00 7.96 -2.39 -0.02 0.99 16 33 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.10 1.03 7.26 -2.39 -0.02 1.01 16 38 H 0.20 3.29 7.07 -2.91 -0.02 3.27 16 39 H 0.41 9.52 7.40 -92.71 -0.69 8.84 16 40 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.05 1.80 7.84 -2.39 -0.02 1.78 16 42 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 43 H 0.01 0.51 7.89 -2.39 -0.02 0.50 16 44 H 0.04 2.10 7.35 -2.39 -0.02 2.08 16 45 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 46 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.05 1.72 8.10 -2.39 -0.02 1.71 16 Total: -1.00 -77.51 386.49 0.83 -76.68 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.30 Total: 18.29 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 6.98 Total: 17.31 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -6.69 Total: -131.38 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -1.79 Total: -28.86 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -77.51 0.83 -76.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031670148.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.074 kcal (2) G-P(sol) polarization free energy of solvation -77.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds