Wall clock time and date at job start Tue Mar 31 2020 18:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30450 * 125.98786 * 2 1 4 4 N 1.39929 * 108.89704 * 179.97438 * 3 2 1 5 5 C 1.46500 * 125.75651 * 179.97438 * 4 3 2 6 6 H 1.09003 * 110.43380 * 336.07249 * 5 4 3 7 7 C 1.54818 * 110.48618 * 98.75065 * 5 4 3 8 8 C 1.54996 * 102.08839 * 97.79905 * 7 5 4 9 9 O 1.44383 * 103.49311 * 37.02472 * 8 7 5 10 10 C 1.43748 * 106.97151 * 319.93718 * 9 8 7 11 11 C 1.34259 * 108.49299 * 359.97438 * 4 3 2 12 12 C 1.38039 * 107.41623 * 359.76671 * 11 4 3 13 13 C 1.47434 * 126.41682 * 180.25510 * 12 11 4 14 14 O 1.21604 * 119.99945 * 180.13527 * 13 12 11 15 15 N 1.34770 * 119.99999 * 0.13051 * 13 12 11 16 16 C 1.46495 * 120.00337 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47396 * 179.97438 * 16 15 13 18 18 C 1.53943 * 113.74775 * 271.67573 * 17 16 15 19 19 N 1.47574 * 86.11897 * 222.05008 * 18 17 16 20 20 C 1.36946 * 134.49050 * 204.64688 * 19 18 17 21 21 H 1.07999 * 119.99688 * 179.97438 * 20 19 18 22 22 C 1.38807 * 119.99745 * 359.97438 * 20 19 18 23 23 N 1.31617 * 120.00307 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99763 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46945 * 89.99802 * 24 22 20 26 26 H 1.48497 * 109.46807 * 210.00024 * 24 22 20 27 27 H 1.48501 * 109.46937 * 329.99970 * 24 22 20 28 28 C 1.47579 * 91.01936 * 24.63704 * 19 18 17 29 29 H 1.09002 * 109.47152 * 90.02734 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02835 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02815 * 1 2 3 32 32 H 1.08998 * 110.90638 * 215.99383 * 7 5 4 33 33 H 1.08997 * 110.90499 * 339.60527 * 7 5 4 34 34 H 1.09000 * 110.62188 * 278.52534 * 8 7 5 35 35 H 1.08999 * 110.75055 * 155.58815 * 8 7 5 36 36 H 1.09002 * 109.88048 * 267.08613 * 10 9 8 37 37 H 1.09003 * 110.00187 * 146.01031 * 10 9 8 38 38 H 1.08004 * 126.29391 * 180.02562 * 11 4 3 39 39 H 0.97003 * 119.99970 * 0.02562 * 15 13 12 40 40 H 1.08997 * 109.47356 * 300.00333 * 16 15 13 41 41 H 1.09005 * 109.47375 * 60.00310 * 16 15 13 42 42 H 1.09000 * 112.94318 * 43.41359 * 17 16 15 43 43 H 1.09006 * 113.76746 * 336.35067 * 18 17 16 44 44 H 1.08997 * 113.76720 * 107.74565 * 18 17 16 45 45 H 0.97001 * 120.00144 * 179.97438 * 23 22 20 46 46 H 1.08999 * 113.77205 * 221.06111 * 28 19 18 47 47 H 1.09002 * 113.86830 * 89.67223 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6443 0.0006 5 6 4.7787 1.5291 0.0003 6 1 4.5182 2.5028 -0.4148 7 6 5.3435 1.6814 1.4337 8 6 6.5052 0.6554 1.4356 9 8 7.0495 0.7602 0.1024 10 6 5.9356 0.8951 -0.7962 11 6 3.6439 -0.6979 0.0015 12 6 2.3373 -1.1432 0.0069 13 6 1.8916 -2.5485 0.0150 14 8 0.7039 -2.8096 0.0167 15 7 2.8004 -3.5436 0.0205 16 6 2.3576 -4.9400 0.0291 17 6 3.5784 -5.8623 0.0333 18 6 4.0965 -6.2113 -1.3737 19 7 4.2599 -7.5863 -0.8631 20 6 5.0520 -8.6495 -1.2059 21 1 4.9783 -9.5767 -0.6572 22 6 5.9497 -8.5352 -2.2585 23 7 6.0399 -7.4049 -2.9268 24 14 7.0298 -9.9858 -2.7264 25 1 6.3307 -10.8170 -3.7391 26 1 8.3092 -9.4879 -3.2924 27 1 7.3079 -10.8054 -1.5198 28 6 3.2269 -7.3553 0.1653 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 0.8903 0.5134 31 1 -0.3633 -0.8898 0.5143 32 1 5.7168 2.6920 1.5992 33 1 4.5916 1.4191 2.1779 34 1 6.1283 -0.3509 1.6182 35 1 7.2561 0.9235 2.1788 36 1 5.6371 -0.0857 -1.1663 37 1 6.2069 1.5397 -1.6323 38 1 4.5298 -1.3157 0.0025 39 1 3.7478 -3.3353 0.0194 40 1 1.7584 -5.1257 0.9205 41 1 1.7575 -5.1365 -0.8595 42 1 4.3576 -5.5325 0.7204 43 1 3.3419 -6.1195 -2.1550 44 1 5.0368 -5.7229 -1.6292 45 1 6.6674 -7.3250 -3.6621 46 1 3.4730 -7.7802 1.1384 47 1 2.2162 -7.5993 -0.1622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031670149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:02 Heat of formation + Delta-G solvation = 53.898777 kcal Electronic energy + Delta-G solvation = -28621.813388 eV Core-core repulsion = 24615.415543 eV Total energy + Delta-G solvation = -4006.397846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.90050 -39.81121 -39.03002 -37.85631 -34.60060 -34.22720 -32.24295 -31.66897 -30.72085 -29.84649 -28.65592 -27.38205 -25.85921 -24.79017 -24.15175 -22.96867 -22.03146 -21.25865 -20.25283 -19.99443 -19.07403 -18.10389 -17.03492 -16.83711 -16.57998 -15.76900 -15.70372 -15.49388 -15.19609 -14.99126 -14.66029 -14.53196 -14.02223 -13.74526 -13.67970 -13.26011 -13.22370 -13.13747 -12.85013 -12.54770 -12.34174 -12.23972 -12.07648 -11.83789 -11.79925 -11.40617 -11.32865 -11.06181 -11.00246 -10.71878 -10.57399 -10.30016 -10.00317 -9.75514 -9.65198 -9.57240 -9.42039 -8.97848 -8.80341 -8.64796 -6.88119 -5.77608 -3.09646 1.26027 1.89497 2.03308 3.25666 3.38474 3.42468 3.44373 3.45318 3.52307 3.79176 3.92557 4.19840 4.27932 4.36094 4.44949 4.48760 4.56970 4.94804 5.04400 5.08261 5.13114 5.16876 5.21831 5.25666 5.28173 5.32378 5.32959 5.38969 5.61286 5.67164 5.78115 5.85245 5.88207 6.08066 6.14438 6.26351 6.36285 6.39692 6.52039 6.58433 6.66405 6.78912 7.21576 7.35183 7.35669 7.54658 7.74608 7.97805 8.44439 9.04392 9.70386 10.59656 11.39508 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011327 B = 0.002785 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.304930 B =10051.748153 C =11905.884450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.133 3.867 3 N -0.300 5.300 4 N -0.354 5.354 5 C 0.124 3.876 6 H 0.124 0.876 7 C -0.166 4.166 8 C 0.041 3.959 9 O -0.364 6.364 10 C 0.035 3.965 11 C 0.097 3.903 12 C -0.278 4.278 13 C 0.590 3.410 14 O -0.546 6.546 15 N -0.721 5.721 16 C 0.132 3.868 17 C -0.153 4.153 18 C 0.169 3.831 19 N -0.613 5.613 20 C -0.223 4.223 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.911 3.089 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.128 3.872 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.181 0.819 39 H 0.397 0.603 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.027 0.973 44 H 0.071 0.929 45 H 0.253 0.747 46 H 0.045 0.955 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.933 21.654 8.926 23.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.034 4.034 3 N -0.121 5.121 4 N -0.133 5.133 5 C 0.022 3.978 6 H 0.141 0.859 7 C -0.204 4.204 8 C -0.036 4.036 9 O -0.283 6.283 10 C -0.043 4.043 11 C -0.054 4.054 12 C -0.293 4.293 13 C 0.377 3.623 14 O -0.425 6.425 15 N -0.371 5.371 16 C 0.008 3.992 17 C -0.173 4.173 18 C 0.043 3.957 19 N -0.339 5.339 20 C -0.350 4.350 21 H 0.097 0.903 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.206 1.206 28 C 0.002 3.998 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.094 0.906 37 H 0.125 0.875 38 H 0.198 0.802 39 H 0.230 0.770 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.045 0.955 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.136 22.629 8.677 24.438 hybrid contribution 0.967 -1.593 -0.430 1.913 sum -2.169 21.036 8.247 22.698 Atomic orbital electron populations 1.20355 0.85551 1.04004 1.03644 1.22501 0.97278 0.88696 0.94964 1.77188 0.85621 1.22606 1.26735 1.48423 1.05486 1.04170 1.55200 1.22762 0.82718 0.94621 0.97698 0.85850 1.23623 0.99067 1.02077 0.95655 1.23709 0.95824 0.98529 0.85495 1.88997 1.28293 1.94541 1.16428 1.23654 0.85259 1.01799 0.93580 1.23034 0.99044 0.85486 0.97787 1.20333 0.91839 0.94828 1.22321 1.17213 0.85703 0.83384 0.75980 1.90726 1.16297 1.84275 1.51168 1.45897 1.09401 1.06556 1.75219 1.21442 0.97220 0.78646 1.01850 1.23804 0.96342 0.94983 1.02195 1.22318 0.98382 0.85040 0.89931 1.45940 1.40293 1.11669 1.35963 1.19036 1.12390 0.91190 1.12407 0.90267 1.24774 1.00031 0.97506 0.98159 1.69810 1.39249 1.24333 1.23515 0.86130 0.79846 0.81547 0.78305 1.21625 1.21636 1.20623 1.22491 0.92914 0.90928 0.93516 0.90161 0.91207 0.88439 0.88246 0.88924 0.91531 0.87831 0.90610 0.87468 0.80220 0.76968 0.91879 0.91307 0.89314 0.95501 0.91048 0.93690 0.93710 0.94607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.93 36.01 0.36 -0.48 16 2 C 0.13 1.68 7.26 -82.02 -0.60 1.08 16 3 N -0.30 -3.62 12.50 33.90 0.42 -3.19 16 4 N -0.35 -3.43 3.53 -52.83 -0.19 -3.61 16 5 C 0.12 0.85 4.14 -66.40 -0.27 0.57 16 6 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 7 C -0.17 -0.92 6.88 -24.72 -0.17 -1.09 16 8 C 0.04 0.25 7.72 38.21 0.29 0.55 16 9 O -0.36 -3.07 11.52 -35.23 -0.41 -3.47 16 10 C 0.04 0.24 7.24 37.73 0.27 0.51 16 11 C 0.10 0.97 9.69 -16.56 -0.16 0.81 16 12 C -0.28 -3.52 6.13 -105.07 -0.64 -4.16 16 13 C 0.59 8.66 7.81 -12.52 -0.10 8.56 16 14 O -0.55 -9.55 14.91 5.27 0.08 -9.47 16 15 N -0.72 -9.76 5.54 -61.39 -0.34 -10.10 16 16 C 0.13 2.02 5.53 -4.04 -0.02 2.00 16 17 C -0.15 -2.67 3.94 -89.69 -0.35 -3.03 16 18 C 0.17 3.82 7.07 -2.98 -0.02 3.80 16 19 N -0.61 -15.54 3.70 -177.92 -0.66 -16.19 16 20 C -0.22 -6.23 10.70 -15.06 -0.16 -6.39 16 21 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 22 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -27.05 11.38 55.49 0.63 -26.42 16 24 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 C 0.13 2.55 8.50 -2.97 -0.03 2.52 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.10 1.18 6.54 -51.93 -0.34 0.84 16 32 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.59 8.06 -51.93 -0.42 0.17 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.55 6.23 -51.93 -0.32 0.23 16 37 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.18 1.34 6.76 -52.48 -0.35 0.98 16 39 H 0.40 4.53 7.40 -40.82 -0.30 4.23 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.07 1.16 7.83 -51.93 -0.41 0.75 16 42 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.03 0.64 7.89 -51.93 -0.41 0.23 16 44 H 0.07 1.77 7.15 -51.93 -0.37 1.40 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 385.53 15.07 5.81 5.81 Total: -1.00 -34.87 385.53 -8.49 -43.36 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -7.12 Total: 1.36 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -1.70 Total: 4.92 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.13 Total: -59.52 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.33 Total: -12.95 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.87 -8.49 -43.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031670149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.258 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds