Wall clock time and date at job start Tue Mar 31 2020 18:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30450 * 125.98786 * 2 1 4 4 N 1.39929 * 108.89704 * 179.97438 * 3 2 1 5 5 C 1.46500 * 125.75651 * 179.97438 * 4 3 2 6 6 H 1.09003 * 110.43380 * 336.07249 * 5 4 3 7 7 C 1.54818 * 110.48618 * 98.75065 * 5 4 3 8 8 C 1.54996 * 102.08839 * 97.79905 * 7 5 4 9 9 O 1.44383 * 103.49311 * 37.02472 * 8 7 5 10 10 C 1.43748 * 106.97151 * 319.93718 * 9 8 7 11 11 C 1.34259 * 108.49299 * 359.97438 * 4 3 2 12 12 C 1.38039 * 107.41623 * 359.76671 * 11 4 3 13 13 C 1.47434 * 126.41682 * 180.25510 * 12 11 4 14 14 O 1.21604 * 119.99945 * 180.13527 * 13 12 11 15 15 N 1.34770 * 119.99999 * 0.13051 * 13 12 11 16 16 C 1.46495 * 120.00337 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47396 * 179.97438 * 16 15 13 18 18 C 1.53943 * 113.74775 * 271.67573 * 17 16 15 19 19 N 1.47574 * 86.11897 * 222.05008 * 18 17 16 20 20 C 1.36946 * 134.49050 * 204.64688 * 19 18 17 21 21 H 1.07999 * 119.99688 * 179.97438 * 20 19 18 22 22 C 1.38807 * 119.99745 * 359.97438 * 20 19 18 23 23 N 1.31617 * 120.00307 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99763 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46945 * 89.99802 * 24 22 20 26 26 H 1.48497 * 109.46807 * 210.00024 * 24 22 20 27 27 H 1.48501 * 109.46937 * 329.99970 * 24 22 20 28 28 C 1.47579 * 91.01936 * 24.63704 * 19 18 17 29 29 H 1.09002 * 109.47152 * 90.02734 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02835 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02815 * 1 2 3 32 32 H 1.08998 * 110.90638 * 215.99383 * 7 5 4 33 33 H 1.08997 * 110.90499 * 339.60527 * 7 5 4 34 34 H 1.09000 * 110.62188 * 278.52534 * 8 7 5 35 35 H 1.08999 * 110.75055 * 155.58815 * 8 7 5 36 36 H 1.09002 * 109.88048 * 267.08613 * 10 9 8 37 37 H 1.09003 * 110.00187 * 146.01031 * 10 9 8 38 38 H 1.08004 * 126.29391 * 180.02562 * 11 4 3 39 39 H 0.97003 * 119.99970 * 0.02562 * 15 13 12 40 40 H 1.08997 * 109.47356 * 300.00333 * 16 15 13 41 41 H 1.09005 * 109.47375 * 60.00310 * 16 15 13 42 42 H 1.09000 * 112.94318 * 43.41359 * 17 16 15 43 43 H 1.09006 * 113.76746 * 336.35067 * 18 17 16 44 44 H 1.08997 * 113.76720 * 107.74565 * 18 17 16 45 45 H 0.97001 * 120.00144 * 179.97438 * 23 22 20 46 46 H 1.08999 * 113.77205 * 221.06111 * 28 19 18 47 47 H 1.09002 * 113.86830 * 89.67223 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6443 0.0006 5 6 4.7787 1.5291 0.0003 6 1 4.5182 2.5028 -0.4148 7 6 5.3435 1.6814 1.4337 8 6 6.5052 0.6554 1.4356 9 8 7.0495 0.7602 0.1024 10 6 5.9356 0.8951 -0.7962 11 6 3.6439 -0.6979 0.0015 12 6 2.3373 -1.1432 0.0069 13 6 1.8916 -2.5485 0.0150 14 8 0.7039 -2.8096 0.0167 15 7 2.8004 -3.5436 0.0205 16 6 2.3576 -4.9400 0.0291 17 6 3.5784 -5.8623 0.0333 18 6 4.0965 -6.2113 -1.3737 19 7 4.2599 -7.5863 -0.8631 20 6 5.0520 -8.6495 -1.2059 21 1 4.9783 -9.5767 -0.6572 22 6 5.9497 -8.5352 -2.2585 23 7 6.0399 -7.4049 -2.9268 24 14 7.0298 -9.9858 -2.7264 25 1 6.3307 -10.8170 -3.7391 26 1 8.3092 -9.4879 -3.2924 27 1 7.3079 -10.8054 -1.5198 28 6 3.2269 -7.3553 0.1653 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 0.8903 0.5134 31 1 -0.3633 -0.8898 0.5143 32 1 5.7168 2.6920 1.5992 33 1 4.5916 1.4191 2.1779 34 1 6.1283 -0.3509 1.6182 35 1 7.2561 0.9235 2.1788 36 1 5.6371 -0.0857 -1.1663 37 1 6.2069 1.5397 -1.6323 38 1 4.5298 -1.3157 0.0025 39 1 3.7478 -3.3353 0.0194 40 1 1.7584 -5.1257 0.9205 41 1 1.7575 -5.1365 -0.8595 42 1 4.3576 -5.5325 0.7204 43 1 3.3419 -6.1195 -2.1550 44 1 5.0368 -5.7229 -1.6292 45 1 6.6674 -7.3250 -3.6621 46 1 3.4730 -7.7802 1.1384 47 1 2.2162 -7.5993 -0.1622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031670149.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:01 Heat of formation + Delta-G solvation = 29.333900 kcal Electronic energy + Delta-G solvation = -28622.878601 eV Core-core repulsion = 24615.415543 eV Total energy + Delta-G solvation = -4007.463059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.72030 -40.64926 -40.10419 -39.37646 -35.75891 -35.12003 -34.17504 -32.41524 -31.71979 -30.42547 -30.23913 -28.27011 -27.41213 -26.51049 -25.03745 -23.84684 -23.36941 -22.10878 -21.27713 -21.01677 -20.40361 -19.03035 -18.68574 -17.58994 -17.54745 -16.98757 -16.94803 -16.51148 -16.16370 -16.07067 -15.72367 -15.61140 -15.44038 -15.16524 -14.69742 -14.36280 -14.24496 -14.08520 -13.87764 -13.82747 -13.27751 -13.19180 -13.07264 -12.97405 -12.87162 -12.76247 -12.50443 -12.35951 -12.30776 -12.21441 -11.93700 -11.80385 -11.56393 -11.23745 -10.87955 -10.83630 -10.79305 -10.42075 -10.09024 -9.64626 -8.89557 -7.89226 -5.22145 0.40752 1.06866 1.17138 1.46517 1.48216 1.56720 2.29620 2.44967 2.48952 2.75102 3.23158 3.31886 3.34484 3.42833 3.52870 3.65558 3.72839 3.77427 3.91208 4.07754 4.12672 4.20175 4.29575 4.38187 4.41734 4.56296 4.58415 4.65488 4.74185 4.78104 4.78464 4.82091 4.87766 4.89447 4.92227 4.98988 4.99527 5.13922 5.28190 5.46594 5.51428 5.57647 5.60761 5.68662 5.83328 5.96537 6.46077 6.67960 6.94489 7.32955 7.62679 8.58622 9.27482 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011327 B = 0.002785 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.304930 B =10051.748153 C =11905.884450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.120 3.880 3 N -0.314 5.314 4 N -0.346 5.346 5 C 0.119 3.881 6 H 0.136 0.864 7 C -0.156 4.156 8 C 0.036 3.964 9 O -0.384 6.384 10 C 0.036 3.964 11 C 0.114 3.886 12 C -0.305 4.305 13 C 0.591 3.409 14 O -0.579 6.579 15 N -0.714 5.714 16 C 0.145 3.855 17 C -0.114 4.114 18 C 0.165 3.835 19 N -0.645 5.645 20 C -0.236 4.236 21 H 0.083 0.917 22 C -0.067 4.067 23 N -0.952 5.952 24 Si 0.977 3.023 25 H -0.290 1.290 26 H -0.293 1.293 27 H -0.267 1.267 28 C 0.125 3.875 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.117 0.883 36 H 0.070 0.930 37 H 0.122 0.878 38 H 0.205 0.795 39 H 0.408 0.592 40 H 0.077 0.923 41 H 0.052 0.948 42 H 0.106 0.894 43 H 0.010 0.990 44 H 0.045 0.955 45 H 0.248 0.752 46 H 0.062 0.938 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.148 22.452 10.191 24.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.048 4.048 3 N -0.136 5.136 4 N -0.124 5.124 5 C 0.018 3.982 6 H 0.154 0.846 7 C -0.194 4.194 8 C -0.040 4.040 9 O -0.303 6.303 10 C -0.042 4.042 11 C -0.038 4.038 12 C -0.320 4.320 13 C 0.380 3.620 14 O -0.461 6.461 15 N -0.364 5.364 16 C 0.020 3.980 17 C -0.133 4.133 18 C 0.040 3.960 19 N -0.371 5.371 20 C -0.364 4.364 21 H 0.101 0.899 22 C -0.260 4.260 23 N -0.601 5.601 24 Si 0.805 3.195 25 H -0.217 1.217 26 H -0.219 1.219 27 H -0.192 1.192 28 C 0.000 4.000 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.136 0.864 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.135 0.865 36 H 0.088 0.912 37 H 0.140 0.860 38 H 0.222 0.778 39 H 0.244 0.756 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.124 0.876 43 H 0.028 0.972 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.350 23.449 9.977 25.592 hybrid contribution 0.734 -1.794 -0.803 2.098 sum -1.616 21.655 9.175 23.573 Atomic orbital electron populations 1.20324 0.85046 1.04038 1.03802 1.22745 0.97994 0.88872 0.95140 1.77146 0.86582 1.22624 1.27236 1.48685 1.05523 1.04462 1.53704 1.23059 0.81696 0.94573 0.98866 0.84618 1.23590 0.98492 1.02984 0.94383 1.23857 0.96408 0.98757 0.84977 1.88985 1.29181 1.94630 1.17460 1.23707 0.84910 1.01839 0.93772 1.23324 0.98897 0.85872 0.95681 1.20218 0.93087 0.93745 1.24948 1.17458 0.85234 0.84189 0.75140 1.90706 1.17675 1.84862 1.52823 1.45749 1.10018 1.05697 1.74983 1.21173 0.95870 0.79171 1.01753 1.23400 0.97080 0.94327 0.98518 1.22242 0.96908 0.84426 0.92424 1.46364 1.41466 1.11893 1.37417 1.19439 1.12602 0.92121 1.12239 0.89941 1.25596 1.01751 1.00073 0.98547 1.69991 1.40034 1.26136 1.23946 0.85105 0.77713 0.78562 0.78116 1.21683 1.21938 1.19204 1.22702 0.92061 0.92335 0.92896 0.89923 0.89585 0.89890 0.86409 0.89509 0.91589 0.86482 0.91185 0.86048 0.77794 0.75618 0.90519 0.92925 0.87629 0.97227 0.93652 0.94318 0.91959 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.59 9.93 71.24 0.71 -0.89 16 2 C 0.12 2.95 7.26 43.52 0.32 3.26 16 3 N -0.31 -7.19 12.50 -46.67 -0.58 -7.77 16 4 N -0.35 -6.10 3.53 -321.06 -1.13 -7.24 16 5 C 0.12 1.37 4.14 45.98 0.19 1.56 16 6 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 7 C -0.16 -1.37 6.88 31.90 0.22 -1.15 16 8 C 0.04 0.37 7.72 72.66 0.56 0.93 16 9 O -0.38 -5.72 11.52 -148.98 -1.72 -7.44 16 10 C 0.04 0.42 7.24 72.35 0.52 0.94 16 11 C 0.11 2.10 9.69 84.27 0.82 2.92 16 12 C -0.31 -7.48 6.13 -20.15 -0.12 -7.60 16 13 C 0.59 17.04 7.81 86.67 0.68 17.71 16 14 O -0.58 -20.34 14.91 -4.04 -0.06 -20.40 16 15 N -0.71 -18.50 5.54 -466.38 -2.59 -21.08 16 16 C 0.14 4.25 5.53 86.38 0.48 4.72 16 17 C -0.11 -3.80 3.94 -10.13 -0.04 -3.84 16 18 C 0.17 7.57 7.07 86.48 0.61 8.18 16 19 N -0.64 -32.61 3.70 -716.80 -2.65 -35.27 16 20 C -0.24 -13.18 10.70 84.03 0.90 -12.28 16 21 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 22 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 23 N -0.95 -56.88 11.38 21.65 0.25 -56.64 16 24 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 C 0.13 4.79 8.50 86.48 0.74 5.53 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 2.04 6.54 -2.38 -0.02 2.03 16 32 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.92 8.06 -2.39 -0.02 0.90 16 34 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.90 6.23 -2.39 -0.01 0.89 16 37 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.21 2.58 6.76 -2.91 -0.02 2.56 16 39 H 0.41 8.64 7.40 -92.71 -0.69 7.95 16 40 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.05 1.75 7.83 -2.38 -0.02 1.73 16 42 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 43 H 0.01 0.48 7.89 -2.38 -0.02 0.46 16 44 H 0.05 2.30 7.15 -2.39 -0.02 2.28 16 45 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 46 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.05 1.69 8.10 -2.39 -0.02 1.68 16 Total: -1.00 -75.65 385.53 0.89 -74.77 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.30 Total: 16.87 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 7.04 Total: 16.67 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -6.71 Total: -128.00 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -1.78 Total: -27.84 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -75.65 0.89 -74.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031670149.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.100 kcal (2) G-P(sol) polarization free energy of solvation -75.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds