Wall clock time and date at job start Tue Mar 31 2020 18:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31880 * 119.93101 * 2 1 4 4 N 1.28275 * 122.62698 * 180.02562 * 3 2 1 5 5 C 1.32489 * 122.21865 * 359.72938 * 4 3 2 6 6 O 1.35441 * 120.25624 * 180.29603 * 5 4 3 7 7 C 1.40460 * 119.49127 * 0.52584 * 5 4 3 8 8 C 1.47819 * 121.17456 * 179.76353 * 7 5 4 9 9 O 1.21548 * 120.00380 * 269.71547 * 8 7 5 10 10 N 1.34777 * 119.99719 * 89.72608 * 8 7 5 11 11 C 1.46505 * 119.99797 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.47276 * 325.00066 * 11 10 8 13 13 C 1.53002 * 109.46958 * 84.99979 * 11 10 8 14 14 C 1.52997 * 109.46978 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47164 * 299.99874 * 14 13 11 16 16 H 1.08998 * 109.46505 * 299.99708 * 15 14 13 17 17 N 1.46500 * 109.47249 * 180.02562 * 15 14 13 18 18 C 1.36932 * 120.00140 * 84.99833 * 17 15 14 19 19 H 1.08004 * 120.00449 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99838 * 180.02562 * 18 17 15 21 21 N 1.31613 * 120.00147 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99922 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47005 * 89.99771 * 22 20 18 24 24 H 1.48497 * 109.47200 * 209.99711 * 22 20 18 25 25 H 1.48498 * 109.47180 * 329.99943 * 22 20 18 26 26 C 1.52997 * 109.47127 * 59.99836 * 15 14 13 27 27 C 1.52996 * 109.46998 * 204.99519 * 11 10 8 28 28 C 1.38477 * 119.93769 * 180.02562 * 2 1 3 29 29 C 1.50704 * 121.05404 * 359.95268 * 28 2 1 30 30 H 1.09003 * 109.47207 * 269.97526 * 1 2 3 31 31 H 1.08994 * 109.47407 * 29.98196 * 1 2 3 32 32 H 1.09005 * 109.46404 * 149.97950 * 1 2 3 33 33 H 0.96702 * 113.99661 * 270.24260 * 6 5 4 34 34 H 0.97001 * 120.00457 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47097 * 299.99818 * 13 11 10 36 36 H 1.09001 * 109.47142 * 59.99782 * 13 11 10 37 37 H 1.09001 * 109.47375 * 59.99908 * 14 13 11 38 38 H 1.09000 * 109.47140 * 179.97438 * 14 13 11 39 39 H 0.97005 * 119.99374 * 264.99912 * 17 15 14 40 40 H 0.96998 * 120.00493 * 180.02562 * 21 20 18 41 41 H 1.09002 * 109.47153 * 180.02562 * 26 15 14 42 42 H 1.09001 * 109.46832 * 60.00321 * 26 15 14 43 43 H 1.09004 * 109.47368 * 60.00227 * 27 11 10 44 44 H 1.09001 * 109.47372 * 300.00383 * 27 11 10 45 45 H 1.08997 * 109.47631 * 270.02083 * 29 28 2 46 46 H 1.08997 * 109.47286 * 30.03088 * 29 28 2 47 47 H 1.09011 * 109.46875 * 150.02135 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1650 1.1429 0.0000 4 7 3.4464 1.2032 -0.0005 5 6 4.2047 0.1168 0.0043 6 8 5.5546 0.2268 0.0096 7 6 3.5979 -1.1500 -0.0012 8 6 4.4080 -2.3864 -0.0013 9 8 4.7406 -2.8950 -1.0540 10 7 4.7777 -2.9499 1.1658 11 6 5.5802 -4.1757 1.1656 12 1 5.2856 -4.8027 0.3242 13 6 7.0617 -3.8153 1.0390 14 6 7.8997 -5.0954 1.0382 15 6 7.6698 -5.8563 2.3456 16 1 7.9646 -5.2296 3.1872 17 7 8.4727 -7.0817 2.3451 18 6 9.7802 -7.0438 2.7501 19 1 10.2198 -6.1105 3.0695 20 6 10.5410 -8.2049 2.7491 21 7 10.0055 -9.3422 2.3593 22 14 12.3249 -8.1531 3.3009 23 1 12.3982 -8.4022 4.7630 24 1 13.0962 -9.1984 2.5814 25 1 12.8985 -6.8175 2.9969 26 6 6.1883 -6.2166 2.4723 27 6 5.3502 -4.9359 2.4733 28 6 2.1981 -1.2000 -0.0005 29 6 1.4673 -2.5180 -0.0001 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3632 -0.8899 -0.5142 33 1 5.9498 0.2612 -0.8723 34 1 4.5126 -2.5440 2.0059 35 1 7.2256 -3.2736 0.1074 36 1 7.3563 -3.1882 1.8805 37 1 7.6050 -5.7221 0.1965 38 1 8.9552 -4.8387 0.9475 39 1 8.0779 -7.9199 2.0578 40 1 10.5369 -10.1537 2.3590 41 1 6.0244 -6.7583 3.4039 42 1 5.8936 -6.8433 1.6305 43 1 4.2947 -5.1927 2.5636 44 1 5.6448 -4.3088 3.3148 45 1 1.2914 -2.8357 1.0277 46 1 0.5126 -2.4043 -0.5137 47 1 2.0693 -3.2674 -0.5141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034704953.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:47 Heat of formation + Delta-G solvation = -23.234706 kcal Electronic energy + Delta-G solvation = -28792.828983 eV Core-core repulsion = 24783.086379 eV Total energy + Delta-G solvation = -4009.742604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.93810 -40.02687 -38.26732 -37.99268 -35.39519 -34.99477 -33.38481 -32.81470 -30.69380 -30.46830 -29.21759 -28.48808 -27.45576 -24.99174 -23.52456 -23.12912 -22.43621 -21.36244 -20.72320 -19.59794 -19.38330 -18.57901 -17.90687 -17.00360 -16.72479 -16.20332 -15.48970 -15.25778 -14.92725 -14.82054 -14.32659 -14.07562 -13.92543 -13.80762 -13.64525 -13.55487 -13.46504 -13.17400 -13.05912 -12.64051 -12.62407 -12.44780 -12.10641 -11.88024 -11.64963 -11.55042 -11.13762 -10.88548 -10.84452 -10.79396 -10.56812 -10.35958 -10.21260 -10.15271 -9.91288 -9.82853 -9.79544 -9.60807 -9.16117 -8.87475 -6.95890 -5.76880 -3.05459 -0.00794 0.22714 2.08488 2.62503 2.74617 3.02791 3.43046 3.48523 3.50010 3.56802 3.85439 3.96994 4.18344 4.39062 4.58369 4.69088 4.75970 4.81211 4.88843 4.95151 5.02942 5.15805 5.19308 5.20503 5.32624 5.44152 5.48148 5.52977 5.61300 5.65774 5.68443 5.76046 5.81217 5.96045 6.11874 6.16928 6.23821 6.40706 6.50093 6.57127 6.67654 6.84500 6.94955 7.11526 7.14978 7.70019 7.79105 8.14734 8.41945 9.52996 10.11115 10.45582 11.45845 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026488 B = 0.002225 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.847271 B =12579.661150 C =13203.013169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.058 3.942 3 N -0.205 5.205 4 N -0.254 5.254 5 C 0.288 3.712 6 O -0.466 6.466 7 C -0.145 4.145 8 C 0.573 3.427 9 O -0.521 6.521 10 N -0.707 5.707 11 C 0.144 3.856 12 H 0.091 0.909 13 C -0.123 4.123 14 C -0.132 4.132 15 C 0.177 3.823 16 H 0.046 0.954 17 N -0.725 5.725 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.120 4.120 27 C -0.119 4.119 28 C -0.031 4.031 29 C -0.128 4.128 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.412 0.588 34 H 0.400 0.600 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.028 17.459 -4.003 28.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.087 4.087 3 N -0.051 5.051 4 N -0.105 5.105 5 C 0.102 3.898 6 O -0.273 6.273 7 C -0.161 4.161 8 C 0.356 3.644 9 O -0.397 6.397 10 N -0.356 5.356 11 C 0.041 3.959 12 H 0.109 0.891 13 C -0.163 4.163 14 C -0.173 4.173 15 C 0.067 3.933 16 H 0.064 0.936 17 N -0.366 5.366 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.159 4.159 27 C -0.157 4.157 28 C -0.042 4.042 29 C -0.184 4.184 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.272 0.728 34 H 0.234 0.766 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.577 18.699 -4.103 28.845 hybrid contribution 1.203 -1.486 0.062 1.913 sum -20.373 17.214 -4.042 26.976 Atomic orbital electron populations 1.20768 0.86626 1.04551 1.04089 1.22791 0.99468 0.89233 0.97199 1.72855 1.00161 1.24349 1.07703 1.73074 0.99517 1.26381 1.11564 1.20868 0.86435 0.88090 0.94362 1.84717 1.12706 1.95139 1.34721 1.21460 0.94750 0.95575 1.04290 1.17624 0.79263 0.82673 0.84809 1.90871 1.55237 1.62561 1.30995 1.46148 1.53780 1.27947 1.07742 1.21247 0.90993 0.83955 0.99674 0.89134 1.21897 0.93476 0.99247 1.01652 1.22233 0.99424 0.94760 1.00882 1.20241 0.89045 0.89417 0.94624 0.93562 1.42424 1.09893 1.05287 1.78952 1.19238 0.87530 0.94232 1.35830 0.91222 1.24741 0.98324 0.95621 1.02370 1.69654 1.36029 0.98677 1.53825 0.86210 0.85023 0.76998 0.78097 1.21764 1.21804 1.20785 1.21762 0.96058 0.95631 1.02427 1.21771 1.00182 0.97697 0.96099 1.21113 0.91553 0.98004 0.93558 1.21048 1.01086 0.92087 1.04226 0.89345 0.89522 0.89680 0.72779 0.76579 0.92302 0.92073 0.92475 0.91676 0.78306 0.93542 0.91240 0.91901 0.91805 0.91419 0.88927 0.89134 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.42 9.81 36.01 0.35 -0.06 16 2 C 0.06 0.47 6.86 -82.48 -0.57 -0.10 16 3 N -0.21 -2.24 11.40 33.56 0.38 -1.85 16 4 N -0.25 -3.06 11.52 30.73 0.35 -2.71 16 5 C 0.29 3.19 7.88 -16.43 -0.13 3.06 16 6 O -0.47 -4.75 13.09 -18.01 -0.24 -4.98 16 7 C -0.15 -1.49 5.69 -104.45 -0.59 -2.08 16 8 C 0.57 6.68 5.58 -12.34 -0.07 6.61 16 9 O -0.52 -7.91 16.77 5.32 0.09 -7.82 16 10 N -0.71 -7.26 5.07 -54.76 -0.28 -7.54 16 11 C 0.14 1.77 2.45 -67.93 -0.17 1.60 16 12 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 13 C -0.12 -1.76 5.49 -26.73 -0.15 -1.91 16 14 C -0.13 -2.33 5.50 -26.73 -0.15 -2.47 16 15 C 0.18 3.35 2.77 -67.93 -0.19 3.16 16 16 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 17 N -0.73 -17.81 5.12 -53.42 -0.27 -18.08 16 18 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.45 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 22 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C -0.12 -1.81 5.39 -26.71 -0.14 -1.96 16 27 C -0.12 -1.35 5.39 -26.71 -0.14 -1.50 16 28 C -0.03 -0.25 5.96 -103.84 -0.62 -0.87 16 29 C -0.13 -0.69 9.32 36.01 0.34 -0.36 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.19 6.05 -51.93 -0.31 -0.13 16 33 H 0.41 2.56 9.06 45.56 0.41 2.98 16 34 H 0.40 3.27 8.59 -40.82 -0.35 2.92 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 40 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.09 0.29 6.07 -51.93 -0.32 -0.03 16 47 H 0.08 0.60 7.25 -51.92 -0.38 0.22 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -34.76 386.61 -7.18 -41.94 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.27 Total: 9.28 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -2.47 Total: -4.05 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.91 Total: -57.53 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.15 Total: -12.81 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.76 -7.18 -41.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034704953.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.703 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds