Wall clock time and date at job start Tue Mar 31 2020 18:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31880 * 119.93101 * 2 1 4 4 N 1.28275 * 122.62698 * 180.02562 * 3 2 1 5 5 C 1.32489 * 122.21865 * 359.72938 * 4 3 2 6 6 O 1.35441 * 120.25624 * 180.29603 * 5 4 3 7 7 C 1.40460 * 119.49127 * 0.52584 * 5 4 3 8 8 C 1.47819 * 121.17456 * 179.76353 * 7 5 4 9 9 O 1.21548 * 120.00380 * 269.71547 * 8 7 5 10 10 N 1.34777 * 119.99719 * 89.72608 * 8 7 5 11 11 C 1.46505 * 119.99797 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.47276 * 325.00066 * 11 10 8 13 13 C 1.53002 * 109.46958 * 84.99979 * 11 10 8 14 14 C 1.52997 * 109.46978 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47164 * 299.99874 * 14 13 11 16 16 H 1.08998 * 109.46505 * 299.99708 * 15 14 13 17 17 N 1.46500 * 109.47249 * 180.02562 * 15 14 13 18 18 C 1.36932 * 120.00140 * 84.99833 * 17 15 14 19 19 H 1.08004 * 120.00449 * 359.97438 * 18 17 15 20 20 C 1.38813 * 119.99838 * 180.02562 * 18 17 15 21 21 N 1.31613 * 120.00147 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99922 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47005 * 89.99771 * 22 20 18 24 24 H 1.48497 * 109.47200 * 209.99711 * 22 20 18 25 25 H 1.48498 * 109.47180 * 329.99943 * 22 20 18 26 26 C 1.52997 * 109.47127 * 59.99836 * 15 14 13 27 27 C 1.52996 * 109.46998 * 204.99519 * 11 10 8 28 28 C 1.38477 * 119.93769 * 180.02562 * 2 1 3 29 29 C 1.50704 * 121.05404 * 359.95268 * 28 2 1 30 30 H 1.09003 * 109.47207 * 269.97526 * 1 2 3 31 31 H 1.08994 * 109.47407 * 29.98196 * 1 2 3 32 32 H 1.09005 * 109.46404 * 149.97950 * 1 2 3 33 33 H 0.96702 * 113.99661 * 270.24260 * 6 5 4 34 34 H 0.97001 * 120.00457 * 359.97438 * 10 8 7 35 35 H 1.09002 * 109.47097 * 299.99818 * 13 11 10 36 36 H 1.09001 * 109.47142 * 59.99782 * 13 11 10 37 37 H 1.09001 * 109.47375 * 59.99908 * 14 13 11 38 38 H 1.09000 * 109.47140 * 179.97438 * 14 13 11 39 39 H 0.97005 * 119.99374 * 264.99912 * 17 15 14 40 40 H 0.96998 * 120.00493 * 180.02562 * 21 20 18 41 41 H 1.09002 * 109.47153 * 180.02562 * 26 15 14 42 42 H 1.09001 * 109.46832 * 60.00321 * 26 15 14 43 43 H 1.09004 * 109.47368 * 60.00227 * 27 11 10 44 44 H 1.09001 * 109.47372 * 300.00383 * 27 11 10 45 45 H 1.08997 * 109.47631 * 270.02083 * 29 28 2 46 46 H 1.08997 * 109.47286 * 30.03088 * 29 28 2 47 47 H 1.09011 * 109.46875 * 150.02135 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1650 1.1429 0.0000 4 7 3.4464 1.2032 -0.0005 5 6 4.2047 0.1168 0.0043 6 8 5.5546 0.2268 0.0096 7 6 3.5979 -1.1500 -0.0012 8 6 4.4080 -2.3864 -0.0013 9 8 4.7406 -2.8950 -1.0540 10 7 4.7777 -2.9499 1.1658 11 6 5.5802 -4.1757 1.1656 12 1 5.2856 -4.8027 0.3242 13 6 7.0617 -3.8153 1.0390 14 6 7.8997 -5.0954 1.0382 15 6 7.6698 -5.8563 2.3456 16 1 7.9646 -5.2296 3.1872 17 7 8.4727 -7.0817 2.3451 18 6 9.7802 -7.0438 2.7501 19 1 10.2198 -6.1105 3.0695 20 6 10.5410 -8.2049 2.7491 21 7 10.0055 -9.3422 2.3593 22 14 12.3249 -8.1531 3.3009 23 1 12.3982 -8.4022 4.7630 24 1 13.0962 -9.1984 2.5814 25 1 12.8985 -6.8175 2.9969 26 6 6.1883 -6.2166 2.4723 27 6 5.3502 -4.9359 2.4733 28 6 2.1981 -1.2000 -0.0005 29 6 1.4673 -2.5180 -0.0001 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3632 -0.8899 -0.5142 33 1 5.9498 0.2612 -0.8723 34 1 4.5126 -2.5440 2.0059 35 1 7.2256 -3.2736 0.1074 36 1 7.3563 -3.1882 1.8805 37 1 7.6050 -5.7221 0.1965 38 1 8.9552 -4.8387 0.9475 39 1 8.0779 -7.9199 2.0578 40 1 10.5369 -10.1537 2.3590 41 1 6.0244 -6.7583 3.4039 42 1 5.8936 -6.8433 1.6305 43 1 4.2947 -5.1927 2.5636 44 1 5.6448 -4.3088 3.3148 45 1 1.2914 -2.8357 1.0277 46 1 0.5126 -2.4043 -0.5137 47 1 2.0693 -3.2674 -0.5141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034704953.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:46 Heat of formation + Delta-G solvation = -52.059989 kcal Electronic energy + Delta-G solvation = -28794.078941 eV Core-core repulsion = 24783.086379 eV Total energy + Delta-G solvation = -4010.992563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.67328 -41.00785 -39.35022 -38.88753 -36.44578 -36.05199 -34.74359 -33.75644 -32.38372 -31.70707 -29.87115 -29.17562 -28.74001 -26.04654 -25.14493 -23.80035 -23.66074 -22.58823 -21.70579 -20.95283 -20.11425 -19.40639 -19.11695 -18.58111 -17.64855 -17.04655 -16.89699 -16.18768 -15.98826 -15.73833 -15.53644 -15.35794 -15.08708 -14.96044 -14.69183 -14.42681 -14.16356 -14.01740 -13.96581 -13.57939 -13.47639 -13.29727 -13.19740 -13.09894 -12.85091 -12.79325 -12.49896 -12.33579 -12.28607 -12.16516 -12.04962 -11.77629 -11.56259 -11.44678 -11.22385 -11.05424 -10.85568 -10.56996 -10.55193 -10.20123 -8.99261 -7.93855 -5.21561 -0.72380 -0.43807 1.17804 1.46470 1.47653 1.55890 1.80644 2.00561 2.31180 2.56113 2.93487 3.22770 3.26952 3.38974 3.55136 3.72556 3.80026 3.82961 3.88182 4.10741 4.27082 4.30449 4.35588 4.37860 4.49975 4.54296 4.58090 4.63275 4.64842 4.67974 4.80616 4.82368 4.95942 4.98141 5.04455 5.07589 5.11697 5.24375 5.26767 5.34810 5.35755 5.50117 5.55044 5.63533 6.22223 6.28067 6.29300 6.92432 7.34868 7.43164 8.12790 8.34867 9.29704 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026488 B = 0.002225 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.847271 B =12579.661150 C =13203.013169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.064 3.936 3 N -0.231 5.231 4 N -0.285 5.285 5 C 0.282 3.718 6 O -0.478 6.478 7 C -0.160 4.160 8 C 0.582 3.418 9 O -0.560 6.560 10 N -0.692 5.692 11 C 0.153 3.847 12 H 0.076 0.924 13 C -0.113 4.113 14 C -0.122 4.122 15 C 0.171 3.829 16 H 0.045 0.955 17 N -0.739 5.739 18 C -0.235 4.235 19 H 0.073 0.927 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 0.969 3.031 23 H -0.286 1.286 24 H -0.297 1.297 25 H -0.272 1.272 26 C -0.112 4.112 27 C -0.106 4.106 28 C -0.019 4.019 29 C -0.128 4.128 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.424 0.576 34 H 0.415 0.585 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.039 0.961 39 H 0.372 0.628 40 H 0.250 0.750 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.450 18.481 -2.991 30.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.083 4.083 3 N -0.075 5.075 4 N -0.136 5.136 5 C 0.095 3.905 6 O -0.287 6.287 7 C -0.175 4.175 8 C 0.366 3.634 9 O -0.438 6.438 10 N -0.342 5.342 11 C 0.049 3.951 12 H 0.095 0.905 13 C -0.152 4.152 14 C -0.163 4.163 15 C 0.063 3.937 16 H 0.063 0.937 17 N -0.378 5.378 18 C -0.367 4.367 19 H 0.091 0.909 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.798 3.202 23 H -0.213 1.213 24 H -0.224 1.224 25 H -0.197 1.197 26 C -0.151 4.151 27 C -0.144 4.144 28 C -0.030 4.030 29 C -0.184 4.184 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.128 0.872 33 H 0.287 0.713 34 H 0.251 0.749 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.204 0.796 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.114 0.886 44 H 0.102 0.898 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.020 19.805 -3.067 31.283 hybrid contribution 1.867 -1.754 -0.285 2.578 sum -22.153 18.051 -3.352 28.772 Atomic orbital electron populations 1.20979 0.83544 1.05871 1.05629 1.23396 1.01256 0.88278 0.95335 1.72777 0.99877 1.26048 1.08808 1.73002 1.00334 1.27141 1.13076 1.20924 0.86550 0.88310 0.94711 1.84670 1.12748 1.95191 1.36064 1.21347 0.95660 0.94337 1.06150 1.17747 0.78682 0.82637 0.84330 1.90856 1.56772 1.63791 1.32427 1.45919 1.52899 1.27154 1.08207 1.20987 0.89621 0.84584 0.99878 0.90548 1.21766 0.94577 0.97223 1.01679 1.22020 0.98566 0.96097 0.99597 1.20505 0.90960 0.87465 0.94799 0.93743 1.42659 1.09642 1.06686 1.78810 1.19599 0.88828 0.94142 1.34156 0.90876 1.25524 1.02325 0.95528 1.03656 1.69805 1.37301 0.99106 1.55876 0.85202 0.80395 0.77040 0.77532 1.21295 1.22390 1.19704 1.21639 0.93670 0.97638 1.02155 1.21676 1.01262 0.95647 0.95826 1.21487 0.90727 0.99397 0.91427 1.21204 1.01597 0.89817 1.05797 0.87466 0.89395 0.87179 0.71334 0.74863 0.93138 0.91019 0.93861 0.94245 0.79622 0.94126 0.91350 0.92401 0.88608 0.89790 0.86585 0.86331 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.47 9.81 71.24 0.70 0.23 16 2 C 0.06 0.88 6.86 42.61 0.29 1.17 16 3 N -0.23 -4.81 11.40 -47.73 -0.54 -5.36 16 4 N -0.28 -6.84 11.52 -169.57 -1.95 -8.79 16 5 C 0.28 6.14 7.88 85.14 0.67 6.81 16 6 O -0.48 -9.75 13.09 -87.37 -1.14 -10.89 16 7 C -0.16 -3.07 5.69 -19.76 -0.11 -3.18 16 8 C 0.58 12.83 5.58 86.78 0.48 13.32 16 9 O -0.56 -16.82 16.77 -3.87 -0.06 -16.89 16 10 N -0.69 -12.66 5.07 -445.44 -2.26 -14.92 16 11 C 0.15 3.46 2.45 44.99 0.11 3.58 16 12 H 0.08 2.02 7.58 -2.39 -0.02 2.01 16 13 C -0.11 -3.14 5.49 30.59 0.17 -2.97 16 14 C -0.12 -4.35 5.50 30.60 0.17 -4.18 16 15 C 0.17 6.43 2.77 44.99 0.12 6.56 16 16 H 0.04 1.70 8.08 -2.39 -0.02 1.68 16 17 N -0.74 -36.86 5.12 -322.94 -1.65 -38.51 16 18 C -0.24 -13.05 9.93 84.03 0.83 -12.21 16 19 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 20 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 21 N -0.97 -59.57 13.06 21.65 0.28 -59.29 16 22 Si 0.97 46.48 29.55 68.60 2.03 48.51 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 25 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 26 C -0.11 -3.24 5.39 30.61 0.17 -3.07 16 27 C -0.11 -2.08 5.39 30.61 0.17 -1.91 16 28 C -0.02 -0.26 5.96 -19.36 -0.12 -0.37 16 29 C -0.13 -0.92 9.32 71.24 0.66 -0.26 16 30 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.11 -0.03 6.05 -2.38 -0.01 -0.05 16 33 H 0.42 5.49 9.06 -74.06 -0.67 4.82 16 34 H 0.41 5.45 8.59 -92.71 -0.80 4.65 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.37 19.97 7.80 -92.70 -0.72 19.24 16 40 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 41 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.12 0.20 6.07 -2.39 -0.01 0.18 16 47 H 0.07 0.78 7.25 -2.38 -0.02 0.76 16 Total: -1.00 -77.87 386.61 -1.69 -79.56 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: -1.16 Total: 27.14 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 4.79 Total: -0.56 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -6.13 Total: -126.87 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -1.21 Total: -27.78 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -77.87 -1.69 -79.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034704953.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.500 kcal (2) G-P(sol) polarization free energy of solvation -77.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds