Wall clock time and date at job start Tue Mar 31 2020 18:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35834 * 126.45723 * 2 1 4 4 H 0.96997 * 124.91783 * 0.02705 * 3 2 1 5 5 N 1.28454 * 110.16475 * 179.97438 * 3 2 1 6 6 C 1.31936 * 110.21486 * 0.02562 * 5 3 2 7 7 C 1.47518 * 126.46172 * 179.97438 * 6 5 3 8 8 O 1.21589 * 120.00042 * 173.91956 * 7 6 5 9 9 N 1.34776 * 120.00081 * 353.92304 * 7 6 5 10 10 C 1.46941 * 120.55209 * 172.97891 * 9 7 6 11 11 C 1.53335 * 108.68743 * 125.62341 * 10 9 7 12 12 C 1.52117 * 109.44286 * 53.30051 * 11 10 9 13 13 C 1.54394 * 110.50260 * 64.09192 * 12 11 10 14 14 C 1.54454 * 102.87030 * 83.33178 * 13 12 11 15 15 N 1.47078 * 107.29810 * 21.50251 * 14 13 12 16 16 C 1.36935 * 125.62701 * 180.96711 * 15 14 13 17 17 H 1.07998 * 120.00060 * 186.52395 * 16 15 14 18 18 C 1.38811 * 120.00216 * 6.51928 * 16 15 14 19 19 N 1.31619 * 120.00079 * 7.64028 * 18 16 15 20 20 Si 1.86797 * 120.00186 * 187.63444 * 18 16 15 21 21 H 1.48507 * 109.47184 * 265.02667 * 20 18 16 22 22 H 1.48499 * 109.47424 * 25.02895 * 20 18 16 23 23 H 1.48500 * 109.47195 * 145.02928 * 20 18 16 24 24 C 1.47574 * 108.74538 * 1.23054 * 15 14 13 25 25 C 1.52098 * 111.59986 * 300.69673 * 12 11 10 26 26 C 1.46930 * 120.55178 * 352.95093 * 9 7 6 27 27 C 1.35781 * 126.46109 * 180.30241 * 2 1 3 28 28 O 1.36089 * 127.26846 * 359.97438 * 27 2 1 29 29 H 1.09001 * 109.46886 * 89.97271 * 1 2 3 30 30 H 1.09010 * 109.47152 * 209.97252 * 1 2 3 31 31 H 1.09001 * 109.47313 * 329.97182 * 1 2 3 32 32 H 1.09002 * 109.60244 * 5.86094 * 10 9 7 33 33 H 1.09004 * 109.59862 * 245.38198 * 10 9 7 34 34 H 1.09002 * 109.47942 * 293.31080 * 11 10 9 35 35 H 1.09001 * 109.47971 * 173.29489 * 11 10 9 36 36 H 1.09001 * 110.73263 * 324.98088 * 13 12 11 37 37 H 1.09006 * 110.72926 * 201.67290 * 13 12 11 38 38 H 1.09002 * 109.87894 * 262.07493 * 14 13 12 39 39 H 1.09006 * 109.87683 * 140.92783 * 14 13 12 40 40 H 0.97001 * 120.00424 * 179.97438 * 19 18 16 41 41 H 1.08999 * 110.37653 * 95.26238 * 24 15 14 42 42 H 1.08998 * 110.37504 * 217.61102 * 24 15 14 43 43 H 1.09003 * 109.47286 * 179.29421 * 25 12 11 44 44 H 1.09004 * 109.47758 * 299.30473 * 25 12 11 45 45 H 1.08997 * 109.60049 * 354.12842 * 26 9 7 46 46 H 1.08992 * 109.59796 * 114.61639 * 26 9 7 47 47 H 0.96705 * 114.00121 * 270.17536 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0044 2.0117 0.0004 5 7 3.5471 0.7322 0.0005 6 6 3.6374 -0.5841 0.0004 7 6 4.8810 -1.3776 0.0003 8 8 4.8303 -2.5873 0.1117 9 7 6.0734 -0.7616 -0.1231 10 6 7.3241 -1.5179 0.0286 11 6 8.1864 -1.2969 -1.2198 12 6 8.3547 0.1955 -1.4612 13 6 9.1328 0.8472 -0.2977 14 6 10.6059 0.5760 -0.6744 15 7 10.6479 0.3255 -2.1231 16 6 11.7699 0.0257 -2.8486 17 1 11.7158 -0.0378 -3.9253 18 6 12.9770 -0.1964 -2.2001 19 7 13.0148 -0.2681 -0.8864 20 14 14.5476 -0.3938 -3.1918 21 1 14.8104 -1.8374 -3.4207 22 1 14.3978 0.2954 -4.4987 23 1 15.6833 0.2037 -2.4445 24 6 9.2823 0.4569 -2.6669 25 6 7.0137 0.8856 -1.6582 26 6 6.1444 0.6772 -0.4123 27 6 2.3139 -1.0920 -0.0058 28 8 1.9327 -2.3984 -0.0122 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3634 -0.8903 0.5134 31 1 -0.3634 0.8897 0.5143 32 1 7.0991 -2.5792 0.1345 33 1 7.8597 -1.1656 0.9101 34 1 7.7002 -1.7520 -2.0827 35 1 9.1649 -1.7536 -1.0712 36 1 8.8823 0.3694 0.6494 37 1 8.9365 1.9186 -0.2545 38 1 10.9711 -0.2988 -0.1363 39 1 11.2169 1.4453 -0.4307 40 1 13.8582 -0.4237 -0.4332 41 1 9.1250 1.4617 -3.0591 42 1 9.1106 -0.2864 -3.4453 43 1 7.1736 1.9523 -1.8155 44 1 6.5108 0.4614 -2.5273 45 1 5.1418 1.0629 -0.5972 46 1 6.5889 1.1989 0.4351 47 1 1.8202 -2.7796 0.8694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035176842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:09 Heat of formation + Delta-G solvation = 36.286485 kcal Electronic energy + Delta-G solvation = -29773.448366 eV Core-core repulsion = 25766.286794 eV Total energy + Delta-G solvation = -4007.161572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.04310 -40.10554 -38.39652 -37.41564 -35.64460 -33.36196 -32.76021 -31.49461 -30.83284 -30.43041 -28.64863 -27.29890 -26.78340 -24.69365 -23.89720 -22.80521 -22.08890 -21.62426 -20.01910 -19.69703 -18.58217 -17.85128 -17.38171 -16.85314 -16.36099 -16.18593 -15.75506 -14.91291 -14.88805 -14.55194 -14.50694 -14.15481 -13.83697 -13.67468 -13.59946 -13.48273 -13.11448 -13.01688 -12.80107 -12.55876 -12.10051 -11.96085 -11.68848 -11.44599 -11.05302 -10.90044 -10.82042 -10.71931 -10.50301 -10.37155 -10.09334 -9.98992 -9.89541 -9.69245 -9.64459 -9.57479 -9.39220 -9.02570 -8.55503 -8.36905 -6.73239 -5.63297 -2.99096 1.25016 1.58268 2.35419 3.04844 3.30357 3.43521 3.49080 3.50989 3.91116 4.23269 4.35009 4.55418 4.57685 4.95602 5.01217 5.11285 5.15312 5.25251 5.31072 5.37411 5.40163 5.55488 5.58456 5.62708 5.66321 5.81417 5.93014 6.02937 6.08047 6.14787 6.23295 6.27825 6.32735 6.42418 6.53299 6.62646 6.64733 6.72145 6.82686 6.94263 7.07155 7.39369 7.44643 7.56072 7.59170 7.73581 7.90289 8.23985 8.34550 9.28235 9.89614 10.56923 11.45570 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.031820 B = 0.002527 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.739943 B =11079.320581 C =11420.815745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.010 4.010 3 N -0.378 5.378 4 H 0.449 0.551 5 N -0.241 5.241 6 C -0.019 4.019 7 C 0.597 3.403 8 O -0.531 6.531 9 N -0.592 5.592 10 C 0.112 3.888 11 C -0.109 4.109 12 C -0.071 4.071 13 C -0.135 4.135 14 C 0.173 3.827 15 N -0.603 5.603 16 C -0.225 4.225 17 H 0.075 0.925 18 C -0.009 4.009 19 N -0.919 5.919 20 Si 0.909 3.091 21 H -0.290 1.290 22 H -0.282 1.282 23 H -0.291 1.291 24 C 0.145 3.855 25 C -0.115 4.115 26 C 0.089 3.911 27 C 0.046 3.954 28 O -0.452 6.452 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.023 0.977 40 H 0.251 0.749 41 H 0.017 0.983 42 H 0.036 0.964 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.120 0.880 46 H 0.067 0.933 47 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.865 4.105 5.347 27.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.136 4.136 3 N -0.095 5.095 4 H 0.294 0.706 5 N -0.077 5.077 6 C -0.180 4.180 7 C 0.382 3.618 8 O -0.406 6.406 9 N -0.324 5.324 10 C -0.009 4.009 11 C -0.147 4.147 12 C -0.072 4.072 13 C -0.173 4.173 14 C 0.048 3.952 15 N -0.329 5.329 16 C -0.354 4.354 17 H 0.093 0.907 18 C -0.206 4.206 19 N -0.567 5.567 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.208 1.208 23 H -0.217 1.217 24 C 0.019 3.981 25 C -0.154 4.154 26 C -0.034 4.034 27 C -0.010 4.010 28 O -0.257 6.257 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.041 0.959 40 H 0.061 0.939 41 H 0.035 0.965 42 H 0.055 0.945 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.137 0.863 46 H 0.086 0.914 47 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -25.969 4.333 4.841 26.769 hybrid contribution 0.419 -0.156 -0.042 0.449 sum -25.550 4.177 4.799 26.330 Atomic orbital electron populations 1.20297 0.86002 1.03844 1.03605 1.21574 0.95394 0.87457 1.09172 1.43276 1.03126 1.09281 1.53807 0.70570 1.73544 1.00802 1.14038 1.19366 1.22489 0.95498 0.89872 1.10131 1.16883 0.81455 0.86180 0.77235 1.90795 1.86166 1.12832 1.50834 1.47978 1.05249 1.10382 1.68804 1.21811 0.83047 0.97223 0.98840 1.21607 1.00445 0.95928 0.96709 1.21083 0.93630 0.94690 0.97824 1.22892 0.98714 0.98854 0.96840 1.21231 0.89218 0.99892 0.84876 1.44504 1.01816 1.82359 1.04195 1.19040 0.85871 1.40323 0.90116 0.90684 1.24785 0.97885 1.02143 0.95754 1.69957 1.24701 1.55812 1.06244 0.86146 0.83387 0.77620 0.78898 1.21711 1.20761 1.21742 1.21541 0.85607 0.97277 0.93651 1.21736 0.95574 1.00770 0.97335 1.22498 1.03327 0.79824 0.97782 1.17769 0.88984 0.85127 1.09122 1.84910 1.88703 1.19127 1.32964 0.90106 0.89530 0.90963 0.89235 0.90933 0.92259 0.89272 0.92186 0.92776 0.91916 0.95903 0.93904 0.96489 0.94540 0.90850 0.92182 0.86299 0.91439 0.75846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.30 10.44 36.01 0.38 0.07 16 2 C -0.01 -0.07 7.27 -81.70 -0.59 -0.67 16 3 N -0.38 -2.67 6.87 33.71 0.23 -2.44 16 4 H 0.45 1.35 8.96 -190.45 -1.71 -0.36 16 5 N -0.24 -2.56 8.67 33.45 0.29 -2.27 16 6 C -0.02 -0.25 6.84 -82.70 -0.57 -0.81 16 7 C 0.60 9.46 7.68 -12.48 -0.10 9.36 16 8 O -0.53 -9.80 15.96 3.56 0.06 -9.74 16 9 N -0.59 -8.87 2.96 -173.81 -0.51 -9.38 16 10 C 0.11 1.77 6.13 -3.63 -0.02 1.75 16 11 C -0.11 -1.90 4.87 -27.01 -0.13 -2.03 16 12 C -0.07 -1.24 0.55 -153.98 -0.08 -1.32 16 13 C -0.13 -2.49 4.92 -25.24 -0.12 -2.61 16 14 C 0.17 4.18 5.08 -2.96 -0.02 4.16 16 15 N -0.60 -15.46 3.38 -170.18 -0.58 -16.04 16 16 C -0.22 -6.35 10.26 -15.06 -0.15 -6.51 16 17 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 18 C -0.01 -0.27 5.45 -17.43 -0.09 -0.37 16 19 N -0.92 -27.25 10.47 55.49 0.58 -26.66 16 20 Si 0.91 22.47 29.56 -169.99 -5.02 17.44 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 C 0.15 3.06 6.16 -2.75 -0.02 3.04 16 25 C -0.12 -1.66 4.84 -27.01 -0.13 -1.79 16 26 C 0.09 1.17 5.86 -3.63 -0.02 1.15 16 27 C 0.05 0.52 7.28 -39.12 -0.28 0.23 16 28 O -0.45 -5.02 13.21 -21.75 -0.29 -5.31 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.30 8.14 -51.92 -0.42 -0.13 16 31 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.09 1.46 6.99 -51.93 -0.36 1.10 16 33 H 0.07 1.11 6.55 -51.93 -0.34 0.77 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.80 7.82 -51.93 -0.41 1.39 16 36 H 0.06 1.03 6.17 -51.93 -0.32 0.71 16 37 H 0.05 0.94 7.98 -51.93 -0.41 0.52 16 38 H 0.06 1.69 6.84 -51.93 -0.36 1.34 16 39 H 0.02 0.61 8.01 -51.93 -0.42 0.19 16 40 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.02 0.36 8.00 -51.93 -0.42 -0.06 16 42 H 0.04 0.77 8.03 -51.93 -0.42 0.36 16 43 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.12 1.45 4.11 -77.58 -0.32 1.13 16 46 H 0.07 0.87 7.62 -51.93 -0.40 0.47 16 47 H 0.39 2.65 9.07 45.56 0.41 3.07 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -35.79 367.12 -9.21 -44.99 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -7.54 Total: 0.22 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -1.96 Total: 3.66 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.01 Total: -56.79 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.23 Total: -15.05 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.79 -9.21 -44.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035176842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.278 kcal (2) G-P(sol) polarization free energy of solvation -35.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds