Wall clock time and date at job start Tue Mar 31 2020 18:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35834 * 126.45723 * 2 1 4 4 H 0.96997 * 124.91783 * 0.02705 * 3 2 1 5 5 N 1.28454 * 110.16475 * 179.97438 * 3 2 1 6 6 C 1.31936 * 110.21486 * 0.02562 * 5 3 2 7 7 C 1.47518 * 126.46172 * 179.97438 * 6 5 3 8 8 O 1.21589 * 120.00042 * 173.91956 * 7 6 5 9 9 N 1.34776 * 120.00081 * 353.92304 * 7 6 5 10 10 C 1.46941 * 120.55209 * 172.97891 * 9 7 6 11 11 C 1.53335 * 108.68743 * 125.62341 * 10 9 7 12 12 C 1.52117 * 109.44286 * 53.30051 * 11 10 9 13 13 C 1.54394 * 110.50260 * 64.09192 * 12 11 10 14 14 C 1.54454 * 102.87030 * 83.33178 * 13 12 11 15 15 N 1.47078 * 107.29810 * 21.50251 * 14 13 12 16 16 C 1.36935 * 125.62701 * 180.96711 * 15 14 13 17 17 H 1.07998 * 120.00060 * 186.52395 * 16 15 14 18 18 C 1.38811 * 120.00216 * 6.51928 * 16 15 14 19 19 N 1.31619 * 120.00079 * 7.64028 * 18 16 15 20 20 Si 1.86797 * 120.00186 * 187.63444 * 18 16 15 21 21 H 1.48507 * 109.47184 * 265.02667 * 20 18 16 22 22 H 1.48499 * 109.47424 * 25.02895 * 20 18 16 23 23 H 1.48500 * 109.47195 * 145.02928 * 20 18 16 24 24 C 1.47574 * 108.74538 * 1.23054 * 15 14 13 25 25 C 1.52098 * 111.59986 * 300.69673 * 12 11 10 26 26 C 1.46930 * 120.55178 * 352.95093 * 9 7 6 27 27 C 1.35781 * 126.46109 * 180.30241 * 2 1 3 28 28 O 1.36089 * 127.26846 * 359.97438 * 27 2 1 29 29 H 1.09001 * 109.46886 * 89.97271 * 1 2 3 30 30 H 1.09010 * 109.47152 * 209.97252 * 1 2 3 31 31 H 1.09001 * 109.47313 * 329.97182 * 1 2 3 32 32 H 1.09002 * 109.60244 * 5.86094 * 10 9 7 33 33 H 1.09004 * 109.59862 * 245.38198 * 10 9 7 34 34 H 1.09002 * 109.47942 * 293.31080 * 11 10 9 35 35 H 1.09001 * 109.47971 * 173.29489 * 11 10 9 36 36 H 1.09001 * 110.73263 * 324.98088 * 13 12 11 37 37 H 1.09006 * 110.72926 * 201.67290 * 13 12 11 38 38 H 1.09002 * 109.87894 * 262.07493 * 14 13 12 39 39 H 1.09006 * 109.87683 * 140.92783 * 14 13 12 40 40 H 0.97001 * 120.00424 * 179.97438 * 19 18 16 41 41 H 1.08999 * 110.37653 * 95.26238 * 24 15 14 42 42 H 1.08998 * 110.37504 * 217.61102 * 24 15 14 43 43 H 1.09003 * 109.47286 * 179.29421 * 25 12 11 44 44 H 1.09004 * 109.47758 * 299.30473 * 25 12 11 45 45 H 1.08997 * 109.60049 * 354.12842 * 26 9 7 46 46 H 1.08992 * 109.59796 * 114.61639 * 26 9 7 47 47 H 0.96705 * 114.00121 * 270.17536 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0044 2.0117 0.0004 5 7 3.5471 0.7322 0.0005 6 6 3.6374 -0.5841 0.0004 7 6 4.8810 -1.3776 0.0003 8 8 4.8303 -2.5873 0.1117 9 7 6.0734 -0.7616 -0.1231 10 6 7.3241 -1.5179 0.0286 11 6 8.1864 -1.2969 -1.2198 12 6 8.3547 0.1955 -1.4612 13 6 9.1328 0.8472 -0.2977 14 6 10.6059 0.5760 -0.6744 15 7 10.6479 0.3255 -2.1231 16 6 11.7699 0.0257 -2.8486 17 1 11.7158 -0.0378 -3.9253 18 6 12.9770 -0.1964 -2.2001 19 7 13.0148 -0.2681 -0.8864 20 14 14.5476 -0.3938 -3.1918 21 1 14.8104 -1.8374 -3.4207 22 1 14.3978 0.2954 -4.4987 23 1 15.6833 0.2037 -2.4445 24 6 9.2823 0.4569 -2.6669 25 6 7.0137 0.8856 -1.6582 26 6 6.1444 0.6772 -0.4123 27 6 2.3139 -1.0920 -0.0058 28 8 1.9327 -2.3984 -0.0122 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3634 -0.8903 0.5134 31 1 -0.3634 0.8897 0.5143 32 1 7.0991 -2.5792 0.1345 33 1 7.8597 -1.1656 0.9101 34 1 7.7002 -1.7520 -2.0827 35 1 9.1649 -1.7536 -1.0712 36 1 8.8823 0.3694 0.6494 37 1 8.9365 1.9186 -0.2545 38 1 10.9711 -0.2988 -0.1363 39 1 11.2169 1.4453 -0.4307 40 1 13.8582 -0.4237 -0.4332 41 1 9.1250 1.4617 -3.0591 42 1 9.1106 -0.2864 -3.4453 43 1 7.1736 1.9523 -1.8155 44 1 6.5108 0.4614 -2.5273 45 1 5.1418 1.0629 -0.5972 46 1 6.5889 1.1989 0.4351 47 1 1.8202 -2.7796 0.8694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035176842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:08 Heat of formation + Delta-G solvation = 9.527430 kcal Electronic energy + Delta-G solvation = -29774.608725 eV Core-core repulsion = 25766.286794 eV Total energy + Delta-G solvation = -4008.321932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.77879 -41.41938 -39.79611 -38.21064 -37.14909 -34.85538 -33.78053 -32.49887 -32.31675 -31.66297 -30.42734 -28.37738 -27.82416 -26.22893 -25.39958 -24.06718 -23.38110 -22.33036 -21.92028 -20.82744 -19.45450 -19.27505 -18.50178 -18.08152 -17.60926 -17.01361 -16.95810 -16.75220 -16.37196 -15.97905 -15.65972 -15.27780 -15.03795 -14.85626 -14.75178 -14.60642 -14.12142 -14.10159 -13.89992 -13.70528 -13.49681 -13.27815 -13.12749 -13.01332 -12.74218 -12.68014 -12.22579 -12.09053 -12.00480 -11.92115 -11.79389 -11.56314 -11.41691 -11.24845 -11.15901 -10.73573 -10.69471 -10.40211 -9.73057 -9.58520 -8.83549 -7.80812 -5.18831 0.37300 0.87879 1.44795 1.46087 1.55504 1.70169 2.04001 2.22354 2.50300 3.05845 3.33733 3.60505 3.61816 3.70582 3.75562 3.83190 3.92635 3.96240 4.16287 4.25245 4.35379 4.43335 4.52707 4.62978 4.70864 4.74024 4.77581 4.81313 4.83432 4.86524 4.94502 4.97211 5.08124 5.09969 5.11047 5.19373 5.25513 5.40215 5.43505 5.48475 5.64387 5.68409 5.86055 6.04928 6.24779 6.36544 6.74456 6.82191 7.09203 7.12622 7.80986 8.46339 9.26316 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.031820 B = 0.002527 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.739943 B =11079.320581 C =11420.815745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.016 3.984 3 N -0.354 5.354 4 H 0.469 0.531 5 N -0.243 5.243 6 C -0.053 4.053 7 C 0.592 3.408 8 O -0.569 6.569 9 N -0.593 5.593 10 C 0.121 3.879 11 C -0.101 4.101 12 C -0.058 4.058 13 C -0.117 4.117 14 C 0.181 3.819 15 N -0.623 5.623 16 C -0.240 4.240 17 H 0.077 0.923 18 C -0.067 4.067 19 N -0.947 5.947 20 Si 0.975 3.025 21 H -0.288 1.288 22 H -0.270 1.270 23 H -0.293 1.293 24 C 0.140 3.860 25 C -0.107 4.107 26 C 0.093 3.907 27 C 0.016 3.984 28 O -0.469 6.469 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.026 0.974 39 H -0.011 1.011 40 H 0.246 0.754 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.137 0.863 46 H 0.078 0.922 47 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.932 6.189 5.121 30.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 N -0.073 5.073 4 H 0.319 0.681 5 N -0.081 5.081 6 C -0.212 4.212 7 C 0.380 3.620 8 O -0.447 6.447 9 N -0.324 5.324 10 C -0.001 4.001 11 C -0.139 4.139 12 C -0.059 4.059 13 C -0.155 4.155 14 C 0.056 3.944 15 N -0.349 5.349 16 C -0.369 4.369 17 H 0.095 0.905 18 C -0.260 4.260 19 N -0.596 5.596 20 Si 0.803 3.197 21 H -0.215 1.215 22 H -0.195 1.195 23 H -0.220 1.220 24 C 0.015 3.985 25 C -0.146 4.146 26 C -0.029 4.029 27 C -0.040 4.040 28 O -0.276 6.276 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.044 0.956 39 H 0.007 0.993 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.112 0.888 44 H 0.080 0.920 45 H 0.154 0.846 46 H 0.096 0.904 47 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -29.072 6.462 4.600 30.135 hybrid contribution 1.274 -0.783 0.009 1.495 sum -27.799 5.678 4.609 28.745 Atomic orbital electron populations 1.20493 0.82898 1.05634 1.04665 1.21997 0.96850 0.86122 1.06177 1.43387 1.02078 1.10399 1.51481 0.68100 1.73329 1.02511 1.12767 1.19518 1.22177 0.94954 0.90841 1.13214 1.17303 0.82364 0.86056 0.76280 1.90759 1.86846 1.14569 1.52561 1.48029 1.04675 1.11030 1.68705 1.21597 0.83473 0.97125 0.97948 1.21463 0.98927 0.95991 0.97522 1.20995 0.94757 0.94680 0.95499 1.22750 0.94455 1.00511 0.97777 1.20997 0.92518 0.96767 0.84164 1.44788 1.03087 1.82138 1.04862 1.19410 0.87165 1.39744 0.90619 0.90506 1.25617 1.00963 1.02561 0.96825 1.70181 1.24890 1.56906 1.07670 0.85116 0.79269 0.77431 0.77848 1.21500 1.19473 1.21982 1.21745 0.84223 0.97579 0.94927 1.21694 0.93301 1.01484 0.98108 1.22628 1.04166 0.78714 0.97440 1.18083 0.89040 0.85933 1.10909 1.84855 1.88628 1.19687 1.34478 0.89224 0.89024 0.87945 0.90230 0.90258 0.92699 0.92681 0.90599 0.90531 0.95596 0.99310 0.94516 0.95223 0.95154 0.88788 0.92034 0.84637 0.90365 0.74328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 10.44 71.24 0.74 0.47 16 2 C 0.02 0.19 7.27 41.37 0.30 0.49 16 3 N -0.35 -3.66 6.87 -47.27 -0.32 -3.98 16 4 H 0.47 0.66 8.96 -220.00 -1.97 -1.31 16 5 N -0.24 -4.48 8.67 -48.09 -0.42 -4.89 16 6 C -0.05 -1.31 6.84 42.45 0.29 -1.02 16 7 C 0.59 18.61 7.68 86.69 0.67 19.27 16 8 O -0.57 -21.52 15.96 -2.35 -0.04 -21.56 16 9 N -0.59 -17.23 2.96 -822.07 -2.43 -19.66 16 10 C 0.12 3.84 6.13 86.41 0.53 4.37 16 11 C -0.10 -3.59 4.87 30.42 0.15 -3.44 16 12 C -0.06 -1.98 0.55 -51.84 -0.03 -2.01 16 13 C -0.12 -4.21 4.92 31.56 0.16 -4.06 16 14 C 0.18 9.03 5.08 86.76 0.44 9.47 16 15 N -0.62 -32.72 3.38 -692.32 -2.34 -35.06 16 16 C -0.24 -13.88 10.26 84.03 0.86 -13.02 16 17 H 0.08 4.29 7.84 -2.91 -0.02 4.26 16 18 C -0.07 -3.90 5.45 84.86 0.46 -3.43 16 19 N -0.95 -58.31 10.47 21.65 0.23 -58.09 16 20 Si 0.97 47.13 29.56 68.60 2.03 49.15 16 21 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 24 C 0.14 5.86 6.16 86.63 0.53 6.40 16 25 C -0.11 -2.80 4.84 30.41 0.15 -2.65 16 26 C 0.09 2.21 5.86 86.41 0.51 2.71 16 27 C 0.02 0.34 7.28 22.57 0.16 0.50 16 28 O -0.47 -10.16 13.21 -92.91 -1.23 -11.39 16 29 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 31 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.08 2.70 6.99 -2.39 -0.02 2.68 16 33 H 0.08 2.40 6.55 -2.39 -0.02 2.39 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.05 2.34 7.82 -2.39 -0.02 2.32 16 36 H 0.08 2.51 6.17 -2.39 -0.01 2.50 16 37 H 0.08 2.45 7.98 -2.38 -0.02 2.43 16 38 H 0.03 1.48 6.84 -2.39 -0.02 1.46 16 39 H -0.01 -0.63 8.01 -2.38 -0.02 -0.65 16 40 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.03 1.19 8.00 -2.39 -0.02 1.17 16 42 H 0.03 1.29 8.03 -2.39 -0.02 1.27 16 43 H 0.09 2.14 8.09 -2.39 -0.02 2.12 16 44 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.14 2.88 4.11 -35.57 -0.15 2.73 16 46 H 0.08 1.74 7.62 -2.39 -0.02 1.72 16 47 H 0.40 5.41 9.07 -74.05 -0.67 4.74 16 Total: -1.00 -81.63 367.12 -0.36 -81.99 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -1.76 Total: 9.44 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 5.92 Total: 14.05 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -5.29 Total: -121.68 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -1.27 Total: -32.95 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.15 kcal Total: -81.63 -0.36 -81.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035176842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.514 kcal (2) G-P(sol) polarization free energy of solvation -81.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds