Wall clock time and date at job start Tue Mar 31 2020 18:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30448 * 125.98885 * 2 1 4 4 N 1.39936 * 108.89752 * 180.02562 * 3 2 1 5 5 C 1.46502 * 125.75225 * 179.97438 * 4 3 2 6 6 H 1.08999 * 110.74957 * 23.01767 * 5 4 3 7 7 C 1.55299 * 111.02398 * 259.41287 * 5 4 3 8 8 C 1.54942 * 100.94373 * 207.60168 * 7 5 4 9 9 O 1.43645 * 105.13423 * 36.44513 * 8 7 5 10 10 C 1.43234 * 109.97457 * 335.57119 * 9 8 7 11 11 C 1.34263 * 108.49206 * 0.23678 * 4 3 2 12 12 C 1.38052 * 107.41541 * 359.63357 * 11 4 3 13 13 C 1.47420 * 126.41167 * 180.10795 * 12 11 4 14 14 O 1.21607 * 119.99948 * 180.30403 * 13 12 11 15 15 N 1.34773 * 120.00578 * 0.30026 * 13 12 11 16 16 C 1.46500 * 120.00547 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47385 * 180.02562 * 16 15 13 18 18 H 1.09002 * 112.73925 * 56.23815 * 17 16 15 19 19 C 1.53497 * 113.46690 * 187.06154 * 17 16 15 20 20 C 1.53503 * 83.34213 * 140.84438 * 19 17 16 21 21 N 1.47063 * 87.98622 * 333.93188 * 20 19 17 22 22 C 1.36934 * 136.05478 * 207.15804 * 21 20 19 23 23 H 1.08001 * 120.00250 * 173.51552 * 22 21 20 24 24 C 1.38812 * 119.99930 * 353.50977 * 22 21 20 25 25 N 1.31612 * 120.00480 * 5.05890 * 24 22 21 26 26 Si 1.86805 * 119.99941 * 185.05928 * 24 22 21 27 27 H 1.48500 * 109.47347 * 94.98616 * 26 24 22 28 28 H 1.48494 * 109.47155 * 214.99012 * 26 24 22 29 29 H 1.48508 * 109.46988 * 334.98933 * 26 24 22 30 30 H 1.09004 * 109.47010 * 89.96784 * 1 2 3 31 31 H 1.08997 * 109.47223 * 209.97177 * 1 2 3 32 32 H 1.08997 * 109.47379 * 329.97385 * 1 2 3 33 33 H 1.08999 * 111.13002 * 325.52277 * 7 5 4 34 34 H 1.09003 * 111.12614 * 89.63838 * 7 5 4 35 35 H 1.09003 * 110.30954 * 277.53397 * 8 7 5 36 36 H 1.08998 * 110.31500 * 155.36120 * 8 7 5 37 37 H 1.09005 * 109.82807 * 121.22279 * 10 9 8 38 38 H 1.08993 * 109.83716 * 242.19858 * 10 9 8 39 39 H 1.08001 * 126.29352 * 179.75058 * 11 4 3 40 40 H 0.97002 * 119.99489 * 0.02562 * 15 13 12 41 41 H 1.09000 * 109.47079 * 300.00562 * 16 15 13 42 42 H 1.09003 * 109.46909 * 60.00238 * 16 15 13 43 43 H 1.09000 * 114.20729 * 254.43107 * 19 17 16 44 44 H 1.08993 * 114.20740 * 27.26120 * 19 17 16 45 45 H 1.09001 * 113.46291 * 219.14830 * 20 19 17 46 46 H 1.08999 * 113.51875 * 88.72385 * 20 19 17 47 47 H 0.97001 * 120.00791 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 -0.0006 5 6 4.7787 1.5291 -0.0013 6 1 4.5201 2.5101 0.3972 7 6 5.3829 1.6531 -1.4266 8 6 6.8654 1.9554 -1.0923 9 8 7.1532 1.1728 0.0773 10 6 5.9435 0.9023 0.7949 11 6 3.6439 -0.6980 -0.0062 12 6 2.3372 -1.1433 -0.0008 13 6 1.8916 -2.5485 -0.0018 14 8 0.7039 -2.8098 -0.0021 15 7 2.8004 -3.5438 -0.0024 16 6 2.3575 -4.9402 -0.0028 17 6 3.5783 -5.8624 -0.0029 18 1 4.2511 -5.6708 0.8330 19 6 3.2238 -7.3458 -0.1764 20 6 4.4833 -7.3600 -1.0537 21 7 4.2630 -5.9275 -1.3028 22 6 4.5628 -5.0435 -2.3047 23 1 4.1775 -4.0352 -2.2684 24 6 5.3620 -5.4433 -3.3669 25 7 5.7495 -6.6974 -3.4635 26 14 5.8875 -4.2013 -4.6595 27 1 7.2283 -3.6644 -4.3140 28 1 5.9466 -4.8636 -5.9873 29 1 4.9053 -3.0883 -4.7048 30 1 -0.3633 0.0006 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3634 0.8897 0.5142 33 1 5.2873 0.7170 -1.9767 34 1 4.9275 2.4770 -1.9760 35 1 6.9964 3.0163 -0.8793 36 1 7.5089 1.6522 -1.9181 37 1 5.7965 -0.1745 0.8793 38 1 5.9948 1.3486 1.7880 39 1 4.5298 -1.3158 -0.0119 40 1 3.7477 -3.3354 -0.0018 41 1 1.7581 -5.1315 0.8872 42 1 1.7577 -5.1309 -0.8928 43 1 3.3083 -7.9353 0.7365 44 1 2.2971 -7.5229 -0.7221 45 1 4.3831 -7.9765 -1.9470 46 1 5.3978 -7.5685 -0.4984 47 1 6.3077 -6.9769 -4.2059 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038252474.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:12 Heat of formation + Delta-G solvation = 33.719873 kcal Electronic energy + Delta-G solvation = -29400.362365 eV Core-core repulsion = 25393.089496 eV Total energy + Delta-G solvation = -4007.272869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.70895 -40.66986 -40.20766 -39.43924 -35.58640 -35.17923 -34.23881 -32.48755 -31.68604 -30.53540 -29.92423 -29.01272 -27.99006 -25.36906 -25.10764 -23.64984 -23.37760 -22.17349 -21.26415 -21.04517 -20.74855 -19.30905 -18.41985 -17.65173 -17.39617 -17.10321 -16.87463 -16.60089 -16.34278 -15.95448 -15.60643 -15.54331 -15.44322 -15.14791 -14.70625 -14.54868 -14.45973 -14.07306 -13.95434 -13.57794 -13.38368 -13.31702 -13.02074 -12.94643 -12.74235 -12.67905 -12.57564 -12.55769 -12.31261 -12.18941 -11.98480 -11.84758 -11.62313 -11.17763 -10.83838 -10.73590 -10.70315 -10.42742 -10.07024 -9.66170 -8.85538 -7.87607 -5.17587 0.35796 1.03502 1.09091 1.42181 1.43667 1.51306 2.29965 2.45252 2.48407 2.65299 3.15555 3.26249 3.34614 3.47876 3.49111 3.63684 3.68480 3.83997 3.94690 4.05256 4.09211 4.18202 4.30756 4.37166 4.39592 4.51449 4.53898 4.69600 4.69965 4.73312 4.74562 4.75898 4.84620 4.91262 4.96614 4.96730 5.08892 5.15138 5.36624 5.46238 5.52848 5.61369 5.69266 5.77351 5.80140 5.98260 6.41844 6.67133 6.95378 7.32301 7.65801 8.66827 9.30964 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008701 B = 0.004349 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.245362 B = 6436.349455 C = 8383.567003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.121 3.879 3 N -0.311 5.311 4 N -0.345 5.345 5 C 0.123 3.877 6 H 0.142 0.858 7 C -0.167 4.167 8 C 0.053 3.947 9 O -0.393 6.393 10 C 0.043 3.957 11 C 0.112 3.888 12 C -0.304 4.304 13 C 0.589 3.411 14 O -0.581 6.581 15 N -0.710 5.710 16 C 0.133 3.867 17 C 0.133 3.867 18 H 0.070 0.930 19 C -0.135 4.135 20 C 0.146 3.854 21 N -0.628 5.628 22 C -0.203 4.203 23 H 0.086 0.914 24 C -0.068 4.068 25 N -0.952 5.952 26 Si 0.962 3.038 27 H -0.285 1.285 28 H -0.301 1.301 29 H -0.272 1.272 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.202 0.798 40 H 0.404 0.596 41 H 0.080 0.920 42 H 0.042 0.958 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.031 0.969 46 H 0.023 0.977 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.433 17.020 10.669 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.046 4.046 3 N -0.132 5.132 4 N -0.123 5.123 5 C 0.022 3.978 6 H 0.160 0.840 7 C -0.206 4.206 8 C -0.023 4.023 9 O -0.312 6.312 10 C -0.035 4.035 11 C -0.039 4.039 12 C -0.319 4.319 13 C 0.378 3.622 14 O -0.462 6.462 15 N -0.359 5.359 16 C 0.008 3.992 17 C 0.027 3.973 18 H 0.087 0.913 19 C -0.174 4.174 20 C 0.020 3.980 21 N -0.354 5.354 22 C -0.332 4.332 23 H 0.104 0.896 24 C -0.261 4.261 25 N -0.601 5.601 26 Si 0.791 3.209 27 H -0.212 1.212 28 H -0.228 1.228 29 H -0.197 1.197 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.218 0.782 40 H 0.239 0.761 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.118 0.882 44 H 0.098 0.902 45 H 0.049 0.951 46 H 0.041 0.959 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.759 18.264 10.432 21.107 hybrid contribution 0.903 -0.582 -1.321 1.703 sum -0.855 17.682 9.112 19.910 Atomic orbital electron populations 1.20323 0.84743 1.04195 1.03772 1.22769 0.98106 0.88686 0.95053 1.77114 0.86327 1.22518 1.27269 1.48409 1.05524 1.04282 1.54074 1.23216 0.81664 0.94826 0.98126 0.84029 1.23756 0.96682 1.04628 0.95523 1.23544 0.93987 0.96964 0.87854 1.88494 1.29274 1.74141 1.39311 1.23568 0.82132 1.01514 0.96262 1.23309 0.99022 0.85868 0.95742 1.20269 0.93073 0.93980 1.24573 1.17469 0.85292 0.84218 0.75267 1.90679 1.17480 1.84890 1.53192 1.45749 1.09774 1.06077 1.74329 1.21588 0.97017 0.79625 1.00930 1.22564 0.91781 0.94077 0.88857 0.91278 1.23496 0.98298 0.95213 1.00354 1.21988 0.94198 0.86183 0.95638 1.45957 1.66512 1.07137 1.15828 1.19164 1.23008 0.93137 0.97854 0.89634 1.25501 1.01372 0.97891 1.01333 1.70010 1.41333 1.16049 1.32741 0.85298 0.78332 0.78654 0.78596 1.21183 1.22843 1.19735 0.90055 0.89816 0.89239 0.90960 0.87126 0.88903 0.88318 0.90297 0.87727 0.78167 0.76114 0.90154 0.93980 0.88233 0.90212 0.95084 0.95912 0.94606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.77 9.92 71.24 0.71 -1.06 16 2 C 0.12 3.46 7.26 43.52 0.32 3.77 16 3 N -0.31 -8.25 12.50 -46.67 -0.58 -8.83 16 4 N -0.35 -7.68 3.61 -319.78 -1.16 -8.83 16 5 C 0.12 1.90 4.08 46.25 0.19 2.09 16 6 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 7 C -0.17 -2.46 6.85 32.05 0.22 -2.24 16 8 C 0.05 0.69 7.78 72.65 0.56 1.25 16 9 O -0.39 -7.22 11.36 -148.98 -1.69 -8.91 16 10 C 0.04 0.64 7.42 72.45 0.54 1.18 16 11 C 0.11 2.72 9.91 84.28 0.84 3.56 16 12 C -0.30 -9.05 6.13 -20.15 -0.12 -9.18 16 13 C 0.59 20.26 7.81 86.66 0.68 20.94 16 14 O -0.58 -22.99 14.92 -4.05 -0.06 -23.05 16 15 N -0.71 -23.23 5.32 -466.38 -2.48 -25.71 16 16 C 0.13 4.56 5.52 86.38 0.48 5.03 16 17 C 0.13 4.74 4.10 41.79 0.17 4.92 16 18 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 19 C -0.13 -4.52 8.03 30.93 0.25 -4.27 16 20 C 0.15 6.54 7.31 83.18 0.61 7.15 16 21 N -0.63 -29.64 3.65 -713.87 -2.60 -32.25 16 22 C -0.20 -10.64 10.54 84.03 0.89 -9.76 16 23 H 0.09 4.28 7.61 -2.91 -0.02 4.26 16 24 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 25 N -0.95 -56.65 11.62 21.65 0.25 -56.40 16 26 Si 0.96 44.97 29.56 68.60 2.03 47.00 16 27 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 28 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 29 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.08 2.30 6.55 -2.39 -0.02 2.28 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.24 6.00 -2.38 -0.01 1.22 16 38 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.20 3.96 6.42 -2.91 -0.02 3.95 16 40 H 0.40 12.25 7.40 -92.71 -0.69 11.56 16 41 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.08 2.70 8.12 -2.39 -0.02 2.68 16 45 H 0.03 1.60 7.31 -2.39 -0.02 1.58 16 46 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.24 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -73.01 385.59 0.79 -72.23 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.30 Total: 24.68 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 6.78 Total: 20.07 kcal Atomic # 7 Polarization: -125.44 SS G_CDS: -6.57 Total: -132.01 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -1.75 Total: -31.96 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -73.01 0.79 -72.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038252474.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.945 kcal (2) G-P(sol) polarization free energy of solvation -73.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds