Wall clock time and date at job start Tue Mar 31 2020 18:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30452 * 125.98662 * 2 1 4 4 N 1.39936 * 108.89460 * 179.97438 * 3 2 1 5 5 C 1.46504 * 125.75027 * 179.97438 * 4 3 2 6 6 H 1.09002 * 110.43633 * 334.32288 * 5 4 3 7 7 C 1.54813 * 110.48670 * 96.86747 * 5 4 3 8 8 C 1.55227 * 101.98357 * 98.00464 * 7 5 4 9 9 O 1.44373 * 103.56949 * 36.88234 * 8 7 5 10 10 C 1.43744 * 106.97248 * 320.00875 * 9 8 7 11 11 C 1.34250 * 108.49578 * 0.26396 * 4 3 2 12 12 C 1.38051 * 107.41522 * 359.57991 * 11 4 3 13 13 C 1.47427 * 126.41597 * 180.12173 * 12 11 4 14 14 O 1.21595 * 120.00400 * 180.34576 * 13 12 11 15 15 N 1.34783 * 119.99841 * 0.35134 * 13 12 11 16 16 C 1.46501 * 119.99864 * 179.97438 * 15 13 12 17 17 C 1.53004 * 109.46941 * 179.97438 * 16 15 13 18 18 H 1.09003 * 112.73344 * 56.24123 * 17 16 15 19 19 C 1.53495 * 113.46617 * 187.05665 * 17 16 15 20 20 C 1.53494 * 83.34313 * 140.84735 * 19 17 16 21 21 N 1.47065 * 113.46808 * 285.49417 * 17 16 15 22 22 C 1.36933 * 136.05536 * 38.06884 * 21 17 16 23 23 H 1.08001 * 120.00670 * 359.97438 * 22 21 17 24 24 C 1.38816 * 119.99898 * 179.97438 * 22 21 17 25 25 N 1.31619 * 119.99574 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00041 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47286 * 90.00013 * 26 24 22 28 28 H 1.48505 * 109.47014 * 209.99803 * 26 24 22 29 29 H 1.48498 * 109.47163 * 330.00059 * 26 24 22 30 30 H 1.09005 * 109.46624 * 90.02920 * 1 2 3 31 31 H 1.08996 * 109.47135 * 210.02232 * 1 2 3 32 32 H 1.08997 * 109.47474 * 330.02493 * 1 2 3 33 33 H 1.08999 * 110.90868 * 216.12456 * 7 5 4 34 34 H 1.09003 * 110.91016 * 339.73307 * 7 5 4 35 35 H 1.09002 * 110.51777 * 278.38206 * 8 7 5 36 36 H 1.09000 * 110.64403 * 155.43932 * 8 7 5 37 37 H 1.08999 * 109.88023 * 267.08679 * 10 9 8 38 38 H 1.08997 * 109.87802 * 145.93997 * 10 9 8 39 39 H 1.07998 * 126.29377 * 179.74210 * 11 4 3 40 40 H 0.96994 * 120.00046 * 359.97438 * 15 13 12 41 41 H 1.08995 * 109.47085 * 299.99758 * 16 15 13 42 42 H 1.09001 * 109.46933 * 59.99758 * 16 15 13 43 43 H 1.08990 * 114.21149 * 254.44022 * 19 17 16 44 44 H 1.09006 * 114.20577 * 27.26498 * 19 17 16 45 45 H 1.09000 * 113.47220 * 219.15347 * 20 19 17 46 46 H 1.09003 * 113.51493 * 88.72328 * 20 19 17 47 47 H 0.97005 * 119.99794 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6110 0.6443 0.0006 5 6 4.7787 1.5292 0.0003 6 1 4.5261 2.4924 -0.4430 7 6 5.3149 1.7192 1.4401 8 6 6.4808 0.6956 1.4875 9 8 7.0481 0.7665 0.1618 10 6 5.9499 0.8764 -0.7592 11 6 3.6439 -0.6978 -0.0049 12 6 2.3373 -1.1432 0.0007 13 6 1.8916 -2.5485 0.0001 14 8 0.7040 -2.8097 -0.0009 15 7 2.8005 -3.5437 0.0009 16 6 2.3577 -4.9402 0.0009 17 6 3.5786 -5.8624 0.0011 18 1 4.2513 -5.6704 0.8371 19 6 3.2241 -7.3458 -0.1718 20 6 4.4836 -7.3603 -1.0490 21 7 4.2633 -5.9279 -1.2987 22 6 4.5631 -5.0441 -2.3008 23 1 4.2659 -4.0093 -2.2152 24 6 5.2490 -5.4783 -3.4269 25 7 5.6116 -6.7392 -3.5310 26 14 5.6587 -4.2726 -4.7936 27 1 6.9836 -3.6562 -4.5293 28 1 5.6974 -4.9913 -6.0926 29 1 4.6207 -3.2119 -4.8455 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3634 0.8902 0.5134 33 1 5.6829 2.7346 1.5872 34 1 4.5491 1.4740 2.1760 35 1 6.1017 -0.3062 1.6897 36 1 7.2175 0.9866 2.2363 37 1 5.6588 -0.1141 -1.1088 38 1 6.2368 1.5007 -1.6053 39 1 4.5298 -1.3155 -0.0099 40 1 3.7478 -3.3353 0.0014 41 1 1.7576 -5.1310 0.8905 42 1 1.7585 -5.1313 -0.8894 43 1 3.3085 -7.9349 0.7413 44 1 2.2973 -7.5232 -0.7175 45 1 4.3835 -7.9770 -1.9422 46 1 5.3981 -7.5685 -0.4936 47 1 6.0913 -7.0426 -4.3177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038252477.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:16 Heat of formation + Delta-G solvation = 57.964522 kcal Electronic energy + Delta-G solvation = -29559.682966 eV Core-core repulsion = 25553.461425 eV Total energy + Delta-G solvation = -4006.221542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.74298 -39.66538 -38.91299 -37.90543 -34.40759 -33.94160 -32.25149 -31.56508 -30.54592 -29.72232 -28.06833 -27.67132 -26.95439 -24.14984 -23.48816 -22.89684 -22.01181 -21.08124 -20.04463 -19.78309 -19.20515 -18.14705 -16.92954 -16.88575 -16.34569 -15.59549 -15.48298 -15.39428 -15.12909 -14.96580 -14.49110 -14.29352 -13.94083 -13.70163 -13.56824 -13.17791 -13.08534 -13.03171 -12.86369 -12.41420 -12.17001 -11.95322 -11.87409 -11.70300 -11.68848 -11.53405 -11.12920 -10.99101 -10.91588 -10.78567 -10.59517 -10.17627 -10.00395 -9.84965 -9.59959 -9.43224 -9.18938 -8.83549 -8.78707 -8.41626 -6.92065 -5.79506 -3.11840 1.43043 2.04044 2.19029 3.34339 3.37610 3.40200 3.42268 3.63830 3.74601 3.90796 4.05298 4.31485 4.40684 4.44521 4.50149 4.62435 4.69243 5.08754 5.15747 5.18850 5.24162 5.26149 5.34627 5.36077 5.37912 5.43209 5.47819 5.57181 5.73272 5.75813 5.91055 5.91589 6.01175 6.13191 6.26388 6.33771 6.40600 6.52425 6.59255 6.67824 6.73470 6.95007 7.20995 7.38399 7.50325 7.55850 7.95044 7.98974 8.66667 9.00266 9.67737 10.60876 11.37729 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009180 B = 0.004212 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.241693 B = 6646.343156 C = 8059.979700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.132 3.868 3 N -0.302 5.302 4 N -0.355 5.355 5 C 0.125 3.875 6 H 0.122 0.878 7 C -0.165 4.165 8 C 0.041 3.959 9 O -0.364 6.364 10 C 0.034 3.966 11 C 0.098 3.902 12 C -0.276 4.276 13 C 0.590 3.410 14 O -0.551 6.551 15 N -0.712 5.712 16 C 0.124 3.876 17 C 0.127 3.873 18 H 0.047 0.953 19 C -0.161 4.161 20 C 0.151 3.849 21 N -0.601 5.601 22 C -0.213 4.213 23 H 0.079 0.921 24 C -0.006 4.006 25 N -0.917 5.917 26 Si 0.905 3.095 27 H -0.289 1.289 28 H -0.289 1.289 29 H -0.281 1.281 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.181 0.819 40 H 0.398 0.602 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.025 0.975 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.527 14.475 11.483 18.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.035 4.035 3 N -0.123 5.123 4 N -0.134 5.134 5 C 0.023 3.977 6 H 0.140 0.860 7 C -0.203 4.203 8 C -0.036 4.036 9 O -0.282 6.282 10 C -0.044 4.044 11 C -0.052 4.052 12 C -0.291 4.291 13 C 0.376 3.624 14 O -0.431 6.431 15 N -0.361 5.361 16 C -0.001 4.001 17 C 0.019 3.981 18 H 0.065 0.935 19 C -0.200 4.200 20 C 0.026 3.974 21 N -0.327 5.327 22 C -0.340 4.340 23 H 0.097 0.903 24 C -0.203 4.203 25 N -0.564 5.564 26 Si 0.735 3.265 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.207 1.207 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.125 0.875 39 H 0.198 0.802 40 H 0.232 0.768 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.042 0.958 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.838 15.737 11.078 19.333 hybrid contribution 0.883 -0.108 -0.815 1.206 sum -0.956 15.629 10.263 18.722 Atomic orbital electron populations 1.20333 0.85620 1.03852 1.03598 1.22479 0.97228 0.88734 0.95078 1.77154 0.85630 1.22621 1.26920 1.48390 1.05430 1.04163 1.55448 1.22737 0.82758 0.94448 0.97788 0.85981 1.23656 0.99178 1.01919 0.95591 1.23737 0.95436 0.98590 0.85789 1.88987 1.28450 1.94938 1.15867 1.23677 0.85416 1.01913 0.93417 1.23048 0.99160 0.85400 0.97633 1.20358 0.91794 0.94942 1.21988 1.17196 0.85710 0.83389 0.76059 1.90697 1.16327 1.84312 1.51728 1.45798 1.09450 1.06458 1.74431 1.21786 0.97733 0.79174 1.01362 1.22421 0.91809 0.93220 0.90654 0.93547 1.23652 1.00968 0.95430 0.99912 1.22027 0.91893 0.87258 0.96261 1.45659 1.65686 1.06880 1.14471 1.18820 1.30493 0.90325 0.94377 0.90291 1.24752 1.00859 0.96374 0.98286 1.69823 1.43696 1.13755 1.29145 0.86231 0.78148 0.80121 0.81990 1.21629 1.21562 1.20666 0.90220 0.88486 0.91312 0.88344 0.88941 0.91560 0.87920 0.90432 0.87477 0.80242 0.76821 0.92239 0.91043 0.92363 0.90163 0.91011 0.95772 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 9.92 36.00 0.36 -0.60 16 2 C 0.13 1.95 7.26 -82.02 -0.60 1.35 16 3 N -0.30 -4.24 12.50 33.89 0.42 -3.82 16 4 N -0.36 -4.26 3.54 -52.83 -0.19 -4.45 16 5 C 0.13 1.11 4.14 -66.40 -0.28 0.84 16 6 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 7 C -0.16 -1.19 6.90 -24.60 -0.17 -1.36 16 8 C 0.04 0.32 7.72 38.34 0.30 0.62 16 9 O -0.36 -3.78 11.52 -35.23 -0.41 -4.19 16 10 C 0.03 0.31 7.25 37.73 0.27 0.59 16 11 C 0.10 1.26 9.71 -16.56 -0.16 1.10 16 12 C -0.28 -4.23 6.13 -105.07 -0.64 -4.87 16 13 C 0.59 10.33 7.81 -12.52 -0.10 10.23 16 14 O -0.55 -10.96 14.92 5.28 0.08 -10.88 16 15 N -0.71 -12.08 5.32 -61.38 -0.33 -12.41 16 16 C 0.12 2.22 5.52 -4.04 -0.02 2.19 16 17 C 0.13 2.38 4.10 -72.40 -0.30 2.08 16 18 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 19 C -0.16 -2.87 8.03 -26.22 -0.21 -3.08 16 20 C 0.15 3.40 7.39 -8.52 -0.06 3.34 16 21 N -0.60 -14.31 3.65 -177.01 -0.65 -14.96 16 22 C -0.21 -5.59 10.55 -15.06 -0.16 -5.75 16 23 H 0.08 1.99 7.51 -52.49 -0.39 1.59 16 24 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 25 N -0.92 -26.63 11.51 55.49 0.64 -25.99 16 26 Si 0.90 21.76 29.55 -169.99 -5.02 16.74 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.10 1.33 6.55 -51.93 -0.34 0.99 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.73 8.06 -51.93 -0.42 0.31 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.81 6.11 -51.93 -0.32 0.49 16 38 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.18 1.97 6.64 -52.49 -0.35 1.62 16 40 H 0.40 6.33 7.30 -40.82 -0.30 6.03 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 45 H 0.07 1.81 7.13 -51.93 -0.37 1.44 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 385.20 15.07 5.80 5.80 Total: -1.00 -33.38 385.20 -8.62 -42.00 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.12 Total: 5.72 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -1.86 Total: 6.43 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -0.10 Total: -61.63 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.33 Total: -15.07 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.38 -8.62 -42.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038252477.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.964 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds