Wall clock time and date at job start Tue Mar 31 2020 18:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30449 * 125.99092 * 2 1 4 4 N 1.39928 * 108.90013 * 180.25780 * 3 2 1 5 5 C 1.46502 * 125.75813 * 179.76738 * 4 3 2 6 6 H 1.08997 * 110.43571 * 23.88969 * 5 4 3 7 7 C 1.54802 * 110.48950 * 261.19959 * 5 4 3 8 8 C 1.54996 * 102.09174 * 220.44242 * 7 5 4 9 9 O 1.44381 * 103.49346 * 37.02165 * 8 7 5 10 10 C 1.43739 * 106.97414 * 319.94364 * 9 8 7 11 11 C 1.34265 * 108.49060 * 359.75225 * 4 3 2 12 12 C 1.38044 * 107.41276 * 359.97438 * 11 4 3 13 13 C 1.47431 * 126.40774 * 179.97438 * 12 11 4 14 14 O 1.21608 * 119.99751 * 180.02562 * 13 12 11 15 15 N 1.34769 * 120.00524 * 0.02562 * 13 12 11 16 16 C 1.46502 * 120.00324 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.47283 * 180.02562 * 16 15 13 18 18 H 1.09002 * 112.73515 * 304.66508 * 17 16 15 19 19 C 1.53496 * 113.52027 * 173.87426 * 17 16 15 20 20 C 1.53490 * 83.34309 * 219.14068 * 19 17 16 21 21 N 1.47060 * 113.46536 * 75.41009 * 17 16 15 22 22 C 1.36933 * 136.06074 * 321.99035 * 21 17 16 23 23 H 1.07996 * 120.00117 * 6.93375 * 22 21 17 24 24 C 1.38818 * 120.00049 * 186.92828 * 22 21 17 25 25 N 1.31613 * 119.99984 * 7.47978 * 24 22 21 26 26 Si 1.86802 * 119.99848 * 187.48036 * 24 22 21 27 27 H 1.48506 * 109.46995 * 94.80066 * 26 24 22 28 28 H 1.48503 * 109.46756 * 214.79921 * 26 24 22 29 29 H 1.48499 * 109.47381 * 334.79978 * 26 24 22 30 30 H 1.08997 * 109.47032 * 270.15420 * 1 2 3 31 31 H 1.09005 * 109.46492 * 30.14511 * 1 2 3 32 32 H 1.08996 * 109.47101 * 150.14733 * 1 2 3 33 33 H 1.08997 * 110.91130 * 338.63764 * 7 5 4 34 34 H 1.08996 * 110.90953 * 102.24802 * 7 5 4 35 35 H 1.09001 * 110.62159 * 278.52184 * 8 7 5 36 36 H 1.08997 * 110.61966 * 155.52745 * 8 7 5 37 37 H 1.09002 * 109.87866 * 267.08943 * 10 9 8 38 38 H 1.09000 * 110.00731 * 146.00233 * 10 9 8 39 39 H 1.08006 * 126.29016 * 180.02562 * 11 4 3 40 40 H 0.97002 * 119.99795 * 0.02562 * 15 13 12 41 41 H 1.08998 * 109.46715 * 60.00112 * 16 15 13 42 42 H 1.08996 * 109.47055 * 300.00356 * 16 15 13 43 43 H 1.09004 * 114.20820 * 332.72933 * 19 17 16 44 44 H 1.09001 * 114.20609 * 105.55204 * 19 17 16 45 45 H 1.08992 * 113.47257 * 271.28677 * 20 19 17 46 46 H 1.09000 * 113.51833 * 140.85368 * 20 19 17 47 47 H 0.96998 * 120.00097 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6443 -0.0060 5 6 4.7788 1.5290 -0.0127 6 1 4.5201 2.5037 0.4010 7 6 5.3377 1.6777 -1.4486 8 6 6.8682 1.6369 -1.2071 9 8 7.0159 0.6712 -0.1440 10 6 5.9389 0.8970 0.7807 11 6 3.6439 -0.6980 -0.0041 12 6 2.3372 -1.1432 0.0036 13 6 1.8916 -2.5485 0.0075 14 8 0.7039 -2.8097 0.0139 15 7 2.8003 -3.5437 0.0041 16 6 2.3575 -4.9402 0.0075 17 6 3.5783 -5.8625 0.0032 18 1 4.2555 -5.6610 -0.8268 19 6 3.2242 -7.3481 0.1564 20 6 4.4789 -7.3722 1.0401 21 7 4.2560 -5.9429 1.3058 22 6 4.5496 -5.0711 2.3201 23 1 4.1571 -4.0652 2.2981 24 6 5.3518 -5.4801 3.3766 25 7 5.9497 -6.6518 3.3336 26 14 5.5826 -4.3676 4.8593 27 1 4.6065 -4.7404 5.9146 28 1 6.9630 -4.5229 5.3845 29 1 5.3619 -2.9551 4.4575 30 1 -0.3633 0.0028 1.0276 31 1 -0.3632 0.8888 -0.5161 32 1 -0.3633 -0.8913 -0.5115 33 1 5.0209 0.8457 -2.0775 34 1 5.0382 2.6301 -1.8860 35 1 7.2331 2.6142 -0.8912 36 1 7.3896 1.3030 -2.1042 37 1 6.2631 1.5774 1.5683 38 1 5.6176 -0.0487 1.2171 39 1 4.5298 -1.3158 -0.0072 40 1 3.7477 -3.3354 -0.0006 41 1 1.7536 -5.1319 -0.8795 42 1 1.7620 -5.1303 0.9004 43 1 2.2946 -7.5328 0.6950 44 1 3.3141 -7.9262 -0.7633 45 1 5.3961 -7.5729 0.4865 46 1 4.3754 -7.9995 1.9255 47 1 6.5100 -6.9379 4.0720 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038252479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:19 Heat of formation + Delta-G solvation = 33.055425 kcal Electronic energy + Delta-G solvation = -29418.189675 eV Core-core repulsion = 25410.887994 eV Total energy + Delta-G solvation = -4007.301681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.70421 -40.66146 -40.17580 -39.43403 -35.56586 -35.12866 -34.23947 -32.47650 -31.65114 -30.46624 -29.92122 -29.01027 -27.97209 -25.37316 -25.09323 -23.74901 -23.35743 -22.08941 -21.25280 -21.02121 -20.72812 -19.25458 -18.40208 -17.59036 -17.25177 -17.12024 -16.90367 -16.70943 -16.43147 -15.91894 -15.75186 -15.53731 -15.41369 -15.15579 -14.74452 -14.46378 -14.28015 -14.01481 -13.85292 -13.56274 -13.28577 -13.23645 -13.02948 -12.98420 -12.73885 -12.69621 -12.60116 -12.55877 -12.27588 -12.14335 -11.98004 -11.85606 -11.60789 -11.18032 -10.91586 -10.82473 -10.71022 -10.39808 -10.06345 -9.64798 -8.87610 -7.88673 -5.17686 0.37767 1.04678 1.14887 1.41813 1.44995 1.51427 2.30919 2.45537 2.48367 2.71969 3.19059 3.33672 3.35829 3.47262 3.52067 3.62287 3.75691 3.88780 3.93971 4.07469 4.12962 4.21383 4.30756 4.38457 4.40495 4.47105 4.55615 4.70076 4.71425 4.74574 4.75545 4.76397 4.87270 4.90771 4.96239 4.97343 5.08247 5.15145 5.34044 5.47092 5.53169 5.58583 5.68974 5.74385 5.77066 5.96271 6.43434 6.67031 6.95138 7.32187 7.65359 8.66411 9.30611 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009008 B = 0.004138 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.514524 B = 6764.496926 C = 8278.800856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.120 3.880 3 N -0.312 5.312 4 N -0.347 5.347 5 C 0.120 3.880 6 H 0.140 0.860 7 C -0.158 4.158 8 C 0.045 3.955 9 O -0.392 6.392 10 C 0.034 3.966 11 C 0.114 3.886 12 C -0.306 4.306 13 C 0.589 3.411 14 O -0.581 6.581 15 N -0.711 5.711 16 C 0.134 3.866 17 C 0.132 3.868 18 H 0.066 0.934 19 C -0.133 4.133 20 C 0.150 3.850 21 N -0.627 5.627 22 C -0.203 4.203 23 H 0.085 0.915 24 C -0.067 4.067 25 N -0.953 5.953 26 Si 0.961 3.039 27 H -0.296 1.296 28 H -0.296 1.296 29 H -0.266 1.266 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.197 0.803 40 H 0.403 0.597 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.023 0.977 46 H 0.024 0.976 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.600 17.623 -12.308 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.047 4.047 3 N -0.133 5.133 4 N -0.124 5.124 5 C 0.019 3.981 6 H 0.158 0.842 7 C -0.196 4.196 8 C -0.031 4.031 9 O -0.311 6.311 10 C -0.044 4.044 11 C -0.038 4.038 12 C -0.321 4.321 13 C 0.378 3.622 14 O -0.462 6.462 15 N -0.360 5.360 16 C 0.009 3.991 17 C 0.026 3.974 18 H 0.083 0.917 19 C -0.172 4.172 20 C 0.025 3.975 21 N -0.353 5.353 22 C -0.332 4.332 23 H 0.103 0.897 24 C -0.260 4.260 25 N -0.602 5.602 26 Si 0.791 3.209 27 H -0.224 1.224 28 H -0.223 1.223 29 H -0.191 1.191 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.134 0.866 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.213 0.787 40 H 0.238 0.762 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.101 0.899 44 H 0.118 0.882 45 H 0.040 0.960 46 H 0.043 0.957 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.951 18.781 -11.987 22.366 hybrid contribution 0.874 -0.580 1.268 1.646 sum -1.076 18.201 -10.719 21.150 Atomic orbital electron populations 1.20317 0.84737 1.04131 1.03786 1.22759 0.98100 0.88663 0.95168 1.77092 0.86440 1.22534 1.27256 1.48638 1.05626 1.04291 1.53893 1.23165 0.81542 0.94436 0.98949 0.84238 1.23612 0.96465 1.05318 0.94235 1.23828 0.94157 0.93870 0.91196 1.88988 1.48173 1.57247 1.36654 1.23651 0.85665 1.02291 0.92836 1.23250 0.98870 0.85976 0.95718 1.20274 0.93057 0.94019 1.24746 1.17472 0.85282 0.84220 0.75253 1.90675 1.17426 1.84902 1.53225 1.45768 1.09756 1.06137 1.74343 1.21587 0.96961 0.79544 1.01016 1.22551 0.91924 0.94230 0.88726 0.91690 1.23481 0.98291 0.95046 1.00382 1.21924 0.94277 0.86097 0.95247 1.46081 1.66557 1.07224 1.15439 1.19173 1.22789 0.94197 0.97040 0.89730 1.25476 0.99832 0.98897 1.01760 1.70009 1.35840 1.22039 1.32323 0.85305 0.76288 0.78993 0.80305 1.22374 1.22297 1.19066 0.90011 0.89265 0.89882 0.90687 0.86593 0.89107 0.87006 0.88065 0.89928 0.78666 0.76200 0.90153 0.93752 0.89921 0.88170 0.95958 0.95727 0.94580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.78 9.92 71.24 0.71 -1.07 16 2 C 0.12 3.50 7.26 43.51 0.32 3.81 16 3 N -0.31 -8.41 12.50 -46.68 -0.58 -9.00 16 4 N -0.35 -7.96 3.53 -321.06 -1.13 -9.09 16 5 C 0.12 1.86 4.14 45.98 0.19 2.05 16 6 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 7 C -0.16 -1.87 6.87 31.89 0.22 -1.65 16 8 C 0.05 0.50 7.72 72.67 0.56 1.06 16 9 O -0.39 -7.50 11.52 -148.98 -1.72 -9.22 16 10 C 0.03 0.57 7.17 72.36 0.52 1.09 16 11 C 0.11 2.91 9.66 84.27 0.81 3.72 16 12 C -0.31 -9.37 6.13 -20.15 -0.12 -9.50 16 13 C 0.59 20.68 7.81 86.67 0.68 21.35 16 14 O -0.58 -23.23 14.92 -4.06 -0.06 -23.29 16 15 N -0.71 -23.86 5.40 -466.37 -2.52 -26.38 16 16 C 0.13 4.64 5.52 86.38 0.48 5.11 16 17 C 0.13 4.78 4.10 41.79 0.17 4.95 16 18 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 19 C -0.13 -4.48 8.03 30.93 0.25 -4.23 16 20 C 0.15 6.81 7.20 83.17 0.60 7.41 16 21 N -0.63 -29.98 3.63 -713.98 -2.59 -32.58 16 22 C -0.20 -10.80 10.54 84.04 0.89 -9.91 16 23 H 0.09 4.30 7.69 -2.91 -0.02 4.28 16 24 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16 25 N -0.95 -57.13 11.86 21.65 0.26 -56.88 16 26 Si 0.96 45.68 29.56 68.60 2.03 47.71 16 27 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 28 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 29 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.08 2.31 6.56 -2.39 -0.02 2.29 16 33 H 0.07 1.13 8.06 -2.39 -0.02 1.11 16 34 H 0.12 0.90 8.14 -2.39 -0.02 0.89 16 35 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.69 6.39 -2.39 -0.02 1.68 16 39 H 0.20 4.34 6.85 -2.91 -0.02 4.32 16 40 H 0.40 12.78 7.40 -92.71 -0.69 12.09 16 41 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.08 2.76 8.12 -2.38 -0.02 2.74 16 44 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.02 1.26 7.64 -2.39 -0.02 1.24 16 47 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -73.96 386.56 0.71 -73.25 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.30 Total: 24.53 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 6.73 Total: 20.93 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -6.57 Total: -133.92 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -1.78 Total: -32.51 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -73.96 0.71 -73.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038252479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.307 kcal (2) G-P(sol) polarization free energy of solvation -73.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds