Wall clock time and date at job start Tue Mar 31 2020 18:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.35834 * 126.46086 * 2 1 4 4 H 0.96997 * 124.91936 * 359.97438 * 3 2 1 5 5 N 1.28457 * 110.16444 * 180.02562 * 3 2 1 6 6 C 1.31926 * 110.21342 * 359.97438 * 5 3 2 7 7 C 1.47530 * 126.46324 * 179.97438 * 6 5 3 8 8 O 1.21588 * 119.99983 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99633 * 0.03015 * 7 6 5 10 10 C 1.48154 * 127.02139 * 0.02562 * 9 7 6 11 11 C 1.55042 * 103.30877 * 140.96922 * 10 9 7 12 12 C 1.54177 * 102.72185 * 37.01779 * 11 10 9 13 13 C 1.47611 * 127.01832 * 180.02562 * 9 7 6 14 14 C 1.52492 * 110.02666 * 219.28823 * 12 11 10 15 15 C 1.53130 * 109.61236 * 298.38413 * 14 12 11 16 16 C 1.53188 * 109.29914 * 299.50026 * 15 14 12 17 17 N 1.46936 * 108.88125 * 55.07286 * 16 15 14 18 18 C 1.36943 * 120.68242 * 125.96086 * 17 16 15 19 19 H 1.08003 * 119.99705 * 332.97621 * 18 17 16 20 20 C 1.38810 * 119.99820 * 153.25555 * 18 17 16 21 21 N 1.31617 * 119.99441 * 159.14634 * 20 18 17 22 22 Si 1.86792 * 120.00089 * 339.14581 * 20 18 17 23 23 H 1.48500 * 109.47412 * 92.73706 * 22 20 18 24 24 H 1.48503 * 109.47142 * 212.73796 * 22 20 18 25 25 H 1.48502 * 109.47143 * 332.73627 * 22 20 18 26 26 C 1.47027 * 118.63641 * 306.23515 * 17 16 15 27 27 C 1.35778 * 126.45435 * 180.30680 * 2 1 3 28 28 O 1.36084 * 127.27189 * 359.97438 * 27 2 1 29 29 H 1.08996 * 109.47237 * 89.97177 * 1 2 3 30 30 H 1.08997 * 109.47149 * 209.97274 * 1 2 3 31 31 H 1.08998 * 109.46648 * 329.97377 * 1 2 3 32 32 H 1.08999 * 110.65361 * 259.42080 * 10 9 7 33 33 H 1.09000 * 110.65194 * 22.35369 * 10 9 7 34 34 H 1.09004 * 110.76155 * 278.70853 * 11 10 9 35 35 H 1.08999 * 110.76464 * 155.32297 * 11 10 9 36 36 H 1.08999 * 109.97555 * 85.97464 * 13 9 7 37 37 H 1.08996 * 109.97363 * 324.70203 * 13 9 7 38 38 H 1.09004 * 109.45162 * 178.34055 * 14 12 11 39 39 H 1.09001 * 109.42680 * 58.41308 * 14 12 11 40 40 H 1.09007 * 109.50249 * 179.55777 * 15 14 12 41 41 H 1.08997 * 109.50366 * 59.45019 * 15 14 12 42 42 H 1.08996 * 109.57059 * 295.25957 * 16 15 14 43 43 H 1.09000 * 109.57068 * 174.89190 * 16 15 14 44 44 H 0.97004 * 119.99800 * 179.97438 * 21 20 18 45 45 H 1.08993 * 109.58774 * 172.31690 * 26 17 16 46 46 H 1.09001 * 109.58053 * 292.73399 * 26 17 16 47 47 H 0.96703 * 113.99927 * 270.17756 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3143 1.0925 0.0000 4 1 2.0046 2.0117 -0.0004 5 7 3.5473 0.7320 -0.0005 6 6 3.6374 -0.5842 -0.0004 7 6 4.8810 -1.3779 -0.0014 8 8 4.8270 -2.5925 -0.0016 9 7 6.0770 -0.7564 -0.0020 10 6 6.3232 0.7045 -0.0013 11 6 7.5390 0.8611 0.9479 12 6 8.3847 -0.3870 0.6252 13 6 7.4090 -1.3924 -0.0035 14 6 8.9840 -0.9572 1.9062 15 6 9.9082 0.0814 2.5480 16 6 11.0404 0.4223 1.5741 17 7 10.4553 0.8557 0.2978 18 6 10.8056 2.0565 -0.2596 19 1 11.1390 2.8677 0.3708 20 6 10.7268 2.2330 -1.6341 21 7 10.6564 3.4466 -2.1388 22 14 10.7206 0.7483 -2.7676 23 1 9.3190 0.3449 -3.0474 24 1 11.3995 1.0954 -4.0419 25 1 11.4382 -0.3759 -2.1146 26 6 9.4814 -0.0236 -0.3656 27 6 2.3139 -1.0921 -0.0058 28 8 1.9325 -2.3984 -0.0124 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3632 0.8898 0.5142 32 1 6.5708 1.0532 -1.0038 33 1 5.4572 1.2401 0.3877 34 1 7.2193 0.8524 1.9900 35 1 8.0923 1.7722 0.7201 36 1 7.7132 -1.6171 -1.0258 37 1 7.3853 -2.3077 0.5878 38 1 9.5553 -1.8554 1.6712 39 1 8.1825 -1.2084 2.6009 40 1 10.3295 -0.3251 3.4676 41 1 9.3398 0.9833 2.7753 42 1 11.6596 -0.4597 1.4109 43 1 11.6488 1.2262 1.9884 44 1 10.6016 3.5700 -3.0994 45 1 9.0437 0.4941 -1.2190 46 1 9.9801 -0.9321 -0.7032 47 1 1.8200 -2.7797 0.8692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040166993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:02 Heat of formation + Delta-G solvation = 32.899185 kcal Electronic energy + Delta-G solvation = -30207.158019 eV Core-core repulsion = 26199.849563 eV Total energy + Delta-G solvation = -4007.308456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.91361 -40.08405 -38.36365 -37.34809 -35.82605 -33.26914 -32.86250 -31.56516 -30.93551 -30.63408 -29.20173 -27.24268 -26.22429 -25.35158 -23.83789 -22.60472 -22.38051 -21.55194 -20.49913 -19.14394 -18.52995 -18.28395 -17.34271 -16.79445 -16.43427 -16.20966 -15.70652 -15.27436 -15.03487 -14.44653 -14.32563 -14.09263 -13.93079 -13.69694 -13.59103 -13.36419 -13.10055 -12.95012 -12.82788 -12.49980 -12.35213 -12.17932 -11.71613 -11.71005 -11.63510 -11.11882 -10.88874 -10.67411 -10.52781 -10.43326 -10.34698 -9.95702 -9.88983 -9.74208 -9.61978 -9.56662 -9.39217 -8.97353 -8.60482 -8.43013 -6.96685 -5.95773 -3.30542 1.37247 1.65479 2.45777 3.06903 3.33085 3.39085 3.50136 3.52354 3.99192 4.31194 4.43039 4.52796 4.62945 4.81135 5.02170 5.05999 5.07739 5.13352 5.25530 5.37968 5.40910 5.44576 5.55423 5.65122 5.67937 5.75372 5.82454 5.93032 5.97653 6.07743 6.15385 6.20556 6.30868 6.34314 6.39026 6.47064 6.58227 6.63621 6.67484 6.73196 6.77468 6.88944 6.98639 7.46879 7.53955 7.72649 7.95467 8.29332 8.32540 8.93887 9.72164 10.10840 11.20033 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016071 B = 0.003483 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.799714 B = 8037.841143 C = 8583.179340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.012 4.012 3 N -0.376 5.376 4 H 0.450 0.550 5 N -0.236 5.236 6 C -0.019 4.019 7 C 0.614 3.386 8 O -0.534 6.534 9 N -0.604 5.604 10 C 0.091 3.909 11 C -0.114 4.114 12 C -0.087 4.087 13 C 0.116 3.884 14 C -0.094 4.094 15 C -0.135 4.135 16 C 0.147 3.853 17 N -0.602 5.602 18 C -0.257 4.257 19 H 0.086 0.914 20 C 0.026 3.974 21 N -0.907 5.907 22 Si 0.876 3.124 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.270 1.270 26 C 0.141 3.859 27 C 0.044 3.956 28 O -0.451 6.451 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.022 0.978 43 H 0.062 0.938 44 H 0.262 0.738 45 H 0.074 0.926 46 H 0.025 0.975 47 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.126 -5.549 8.461 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.138 4.138 3 N -0.093 5.093 4 H 0.295 0.705 5 N -0.073 5.073 6 C -0.181 4.181 7 C 0.401 3.599 8 O -0.409 6.409 9 N -0.336 5.336 10 C -0.031 4.031 11 C -0.152 4.152 12 C -0.089 4.089 13 C -0.006 4.006 14 C -0.132 4.132 15 C -0.174 4.174 16 C 0.022 3.978 17 N -0.325 5.325 18 C -0.385 4.385 19 H 0.104 0.896 20 C -0.173 4.173 21 N -0.550 5.550 22 Si 0.706 3.294 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.195 1.195 26 C 0.015 3.985 27 C -0.012 4.012 28 O -0.256 6.256 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.043 0.957 47 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -18.526 -5.193 7.692 20.721 hybrid contribution -0.623 -0.987 -0.414 1.239 sum -19.149 -6.180 7.277 21.397 Atomic orbital electron populations 1.20282 0.86000 1.03794 1.03564 1.21554 0.95386 0.87453 1.09415 1.43190 1.02997 1.09304 1.53800 0.70458 1.73743 1.01103 1.14139 1.18322 1.22357 0.95177 0.89944 1.10617 1.16361 0.80457 0.85908 0.77199 1.90800 1.86167 1.12496 1.51475 1.48691 1.04790 1.09115 1.71030 1.22981 0.99579 0.79702 1.00856 1.22719 0.94717 0.99616 0.98146 1.21567 0.95590 0.94583 0.97191 1.22136 0.80752 0.96600 1.01147 1.21382 0.98344 0.98111 0.95337 1.22029 0.98487 0.98841 0.98045 1.20937 0.93057 0.97652 0.86198 1.44333 1.45250 1.20422 1.22528 1.18897 1.41297 0.87828 0.90494 0.89628 1.25229 0.99615 0.95827 0.96632 1.69832 1.52581 1.20322 1.12292 0.87067 0.77296 0.84521 0.80490 1.21603 1.23181 1.19494 1.21228 0.89052 0.93987 0.94214 1.17761 0.88940 0.85085 1.09371 1.84915 1.88720 1.19169 1.32812 0.90149 0.89584 0.90959 0.90920 0.88149 0.91853 0.87754 0.91545 0.90531 0.92434 0.92931 0.92789 0.91761 0.96054 0.91978 0.92811 0.90782 0.95681 0.76034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.44 36.01 0.38 -0.01 16 2 C -0.01 -0.11 7.27 -81.70 -0.59 -0.70 16 3 N -0.38 -3.37 6.87 33.71 0.23 -3.14 16 4 H 0.45 2.24 8.96 -190.45 -1.71 0.53 16 5 N -0.24 -3.06 9.21 33.45 0.31 -2.75 16 6 C -0.02 -0.29 7.00 -82.69 -0.58 -0.87 16 7 C 0.61 10.84 7.89 -12.47 -0.10 10.75 16 8 O -0.53 -10.63 16.87 3.10 0.05 -10.58 16 9 N -0.60 -10.36 3.30 -171.07 -0.56 -10.92 16 10 C 0.09 1.50 6.71 -2.05 -0.01 1.48 16 11 C -0.11 -1.93 4.99 -25.04 -0.12 -2.05 16 12 C -0.09 -1.52 0.63 -154.27 -0.10 -1.61 16 13 C 0.12 2.00 6.28 -3.14 -0.02 1.98 16 14 C -0.09 -1.46 4.34 -26.92 -0.12 -1.58 16 15 C -0.13 -2.13 5.89 -26.57 -0.16 -2.29 16 16 C 0.15 2.80 6.50 -3.71 -0.02 2.78 16 17 N -0.60 -13.68 2.29 -172.83 -0.40 -14.08 16 18 C -0.26 -6.89 10.03 -15.06 -0.15 -7.04 16 19 H 0.09 2.45 8.06 -52.48 -0.42 2.03 16 20 C 0.03 0.73 5.23 -17.43 -0.09 0.64 16 21 N -0.91 -27.16 13.97 55.49 0.78 -26.39 16 22 Si 0.88 22.27 24.33 -169.99 -4.14 18.13 16 23 H -0.29 -7.15 6.61 56.52 0.37 -6.77 16 24 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 25 H -0.27 -6.78 6.64 56.52 0.38 -6.40 16 26 C 0.14 3.00 2.52 -4.16 -0.01 2.99 16 27 C 0.04 0.56 7.28 -39.12 -0.28 0.28 16 28 O -0.45 -5.48 13.20 -22.19 -0.29 -5.78 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.10 1.51 5.47 -51.93 -0.28 1.22 16 34 H 0.06 0.99 7.63 -51.93 -0.40 0.59 16 35 H 0.10 2.06 7.48 -51.93 -0.39 1.67 16 36 H 0.07 1.19 7.68 -51.93 -0.40 0.79 16 37 H 0.08 1.27 7.60 -51.93 -0.39 0.87 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.05 7.13 -51.93 -0.37 0.68 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.07 1.75 4.53 -51.93 -0.24 1.51 16 46 H 0.03 0.55 7.04 -51.93 -0.37 0.18 16 47 H 0.39 2.97 9.07 45.56 0.41 3.39 16 LS Contribution 365.38 15.07 5.51 5.51 Total: -1.00 -34.87 365.38 -8.03 -42.91 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.53 Total: 2.35 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -1.99 Total: 4.73 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.35 Total: -57.28 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.24 Total: -16.35 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.14 Total: 18.13 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.87 -8.03 -42.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040166993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.808 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds