Wall clock time and date at job start Tue Mar 31 2020 18:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.35834 * 126.46086 * 2 1 4 4 H 0.96997 * 124.91936 * 359.97438 * 3 2 1 5 5 N 1.28457 * 110.16444 * 180.02562 * 3 2 1 6 6 C 1.31926 * 110.21342 * 359.97438 * 5 3 2 7 7 C 1.47530 * 126.46324 * 179.97438 * 6 5 3 8 8 O 1.21588 * 119.99983 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99633 * 0.03015 * 7 6 5 10 10 C 1.48154 * 127.02139 * 0.02562 * 9 7 6 11 11 C 1.55042 * 103.30877 * 140.96922 * 10 9 7 12 12 C 1.54177 * 102.72185 * 37.01779 * 11 10 9 13 13 C 1.47611 * 127.01832 * 180.02562 * 9 7 6 14 14 C 1.52492 * 110.02666 * 219.28823 * 12 11 10 15 15 C 1.53130 * 109.61236 * 298.38413 * 14 12 11 16 16 C 1.53188 * 109.29914 * 299.50026 * 15 14 12 17 17 N 1.46936 * 108.88125 * 55.07286 * 16 15 14 18 18 C 1.36943 * 120.68242 * 125.96086 * 17 16 15 19 19 H 1.08003 * 119.99705 * 332.97621 * 18 17 16 20 20 C 1.38810 * 119.99820 * 153.25555 * 18 17 16 21 21 N 1.31617 * 119.99441 * 159.14634 * 20 18 17 22 22 Si 1.86792 * 120.00089 * 339.14581 * 20 18 17 23 23 H 1.48500 * 109.47412 * 92.73706 * 22 20 18 24 24 H 1.48503 * 109.47142 * 212.73796 * 22 20 18 25 25 H 1.48502 * 109.47143 * 332.73627 * 22 20 18 26 26 C 1.47027 * 118.63641 * 306.23515 * 17 16 15 27 27 C 1.35778 * 126.45435 * 180.30680 * 2 1 3 28 28 O 1.36084 * 127.27189 * 359.97438 * 27 2 1 29 29 H 1.08996 * 109.47237 * 89.97177 * 1 2 3 30 30 H 1.08997 * 109.47149 * 209.97274 * 1 2 3 31 31 H 1.08998 * 109.46648 * 329.97377 * 1 2 3 32 32 H 1.08999 * 110.65361 * 259.42080 * 10 9 7 33 33 H 1.09000 * 110.65194 * 22.35369 * 10 9 7 34 34 H 1.09004 * 110.76155 * 278.70853 * 11 10 9 35 35 H 1.08999 * 110.76464 * 155.32297 * 11 10 9 36 36 H 1.08999 * 109.97555 * 85.97464 * 13 9 7 37 37 H 1.08996 * 109.97363 * 324.70203 * 13 9 7 38 38 H 1.09004 * 109.45162 * 178.34055 * 14 12 11 39 39 H 1.09001 * 109.42680 * 58.41308 * 14 12 11 40 40 H 1.09007 * 109.50249 * 179.55777 * 15 14 12 41 41 H 1.08997 * 109.50366 * 59.45019 * 15 14 12 42 42 H 1.08996 * 109.57059 * 295.25957 * 16 15 14 43 43 H 1.09000 * 109.57068 * 174.89190 * 16 15 14 44 44 H 0.97004 * 119.99800 * 179.97438 * 21 20 18 45 45 H 1.08993 * 109.58774 * 172.31690 * 26 17 16 46 46 H 1.09001 * 109.58053 * 292.73399 * 26 17 16 47 47 H 0.96703 * 113.99927 * 270.17756 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3143 1.0925 0.0000 4 1 2.0046 2.0117 -0.0004 5 7 3.5473 0.7320 -0.0005 6 6 3.6374 -0.5842 -0.0004 7 6 4.8810 -1.3779 -0.0014 8 8 4.8270 -2.5925 -0.0016 9 7 6.0770 -0.7564 -0.0020 10 6 6.3232 0.7045 -0.0013 11 6 7.5390 0.8611 0.9479 12 6 8.3847 -0.3870 0.6252 13 6 7.4090 -1.3924 -0.0035 14 6 8.9840 -0.9572 1.9062 15 6 9.9082 0.0814 2.5480 16 6 11.0404 0.4223 1.5741 17 7 10.4553 0.8557 0.2978 18 6 10.8056 2.0565 -0.2596 19 1 11.1390 2.8677 0.3708 20 6 10.7268 2.2330 -1.6341 21 7 10.6564 3.4466 -2.1388 22 14 10.7206 0.7483 -2.7676 23 1 9.3190 0.3449 -3.0474 24 1 11.3995 1.0954 -4.0419 25 1 11.4382 -0.3759 -2.1146 26 6 9.4814 -0.0236 -0.3656 27 6 2.3139 -1.0921 -0.0058 28 8 1.9325 -2.3984 -0.0124 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3632 0.8898 0.5142 32 1 6.5708 1.0532 -1.0038 33 1 5.4572 1.2401 0.3877 34 1 7.2193 0.8524 1.9900 35 1 8.0923 1.7722 0.7201 36 1 7.7132 -1.6171 -1.0258 37 1 7.3853 -2.3077 0.5878 38 1 9.5553 -1.8554 1.6712 39 1 8.1825 -1.2084 2.6009 40 1 10.3295 -0.3251 3.4676 41 1 9.3398 0.9833 2.7753 42 1 11.6596 -0.4597 1.4109 43 1 11.6488 1.2262 1.9884 44 1 10.6016 3.5700 -3.0994 45 1 9.0437 0.4941 -1.2190 46 1 9.9801 -0.9321 -0.7032 47 1 1.8200 -2.7797 0.8692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040166993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:01 Heat of formation + Delta-G solvation = 6.219780 kcal Electronic energy + Delta-G solvation = -30208.314925 eV Core-core repulsion = 26199.849563 eV Total energy + Delta-G solvation = -4008.465362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.79218 -41.49397 -39.77497 -38.24783 -37.35555 -34.93772 -33.84779 -32.92151 -32.40767 -31.90600 -30.59763 -28.01474 -27.49116 -27.20864 -25.13912 -24.16937 -23.72788 -22.39210 -22.03030 -20.39888 -19.92432 -19.34305 -18.55075 -18.17415 -17.83089 -17.31915 -17.01219 -16.81053 -16.47472 -15.94816 -15.46931 -15.37133 -15.24543 -15.14395 -14.74511 -14.61286 -14.44875 -14.15530 -13.84217 -13.75011 -13.64190 -13.43875 -13.31071 -13.13736 -12.88888 -12.68557 -12.48975 -12.24596 -12.13441 -11.85154 -11.66127 -11.62767 -11.37365 -11.27171 -11.09439 -11.04982 -10.63875 -10.50582 -9.84706 -9.73857 -8.89498 -8.15083 -5.43943 0.33042 0.83078 1.27380 1.38845 1.45653 1.62345 1.94800 2.15818 2.40851 2.98996 3.04542 3.32411 3.52302 3.64534 3.65091 3.71237 3.79213 3.90411 4.20744 4.26345 4.29988 4.31552 4.36913 4.49030 4.57459 4.66881 4.67461 4.72636 4.74406 4.79212 4.91627 4.93764 4.96184 5.01660 5.10359 5.13194 5.17912 5.21882 5.30330 5.32954 5.44892 5.59702 5.89753 5.99580 6.16016 6.36526 6.64646 6.77890 6.93807 6.99603 7.65384 8.07280 9.04606 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016071 B = 0.003483 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.799714 B = 8037.841143 C = 8583.179340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.015 3.985 3 N -0.354 5.354 4 H 0.468 0.532 5 N -0.251 5.251 6 C -0.055 4.055 7 C 0.611 3.389 8 O -0.565 6.565 9 N -0.605 5.605 10 C 0.099 3.901 11 C -0.104 4.104 12 C -0.080 4.080 13 C 0.117 3.883 14 C -0.090 4.090 15 C -0.124 4.124 16 C 0.140 3.860 17 N -0.613 5.613 18 C -0.234 4.234 19 H 0.059 0.941 20 C -0.026 4.026 21 N -0.952 5.952 22 Si 0.928 3.072 23 H -0.284 1.284 24 H -0.313 1.313 25 H -0.263 1.263 26 C 0.142 3.858 27 C 0.018 3.982 28 O -0.465 6.465 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.032 0.968 43 H 0.057 0.943 44 H 0.259 0.741 45 H 0.046 0.954 46 H 0.025 0.975 47 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.474 -6.613 10.280 24.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 N -0.074 5.074 4 H 0.318 0.682 5 N -0.090 5.090 6 C -0.215 4.215 7 C 0.399 3.601 8 O -0.442 6.442 9 N -0.338 5.338 10 C -0.023 4.023 11 C -0.143 4.143 12 C -0.082 4.082 13 C -0.006 4.006 14 C -0.128 4.128 15 C -0.162 4.162 16 C 0.015 3.985 17 N -0.337 5.337 18 C -0.364 4.364 19 H 0.077 0.923 20 C -0.221 4.221 21 N -0.599 5.599 22 Si 0.759 3.241 23 H -0.212 1.212 24 H -0.243 1.243 25 H -0.187 1.187 26 C 0.016 3.984 27 C -0.037 4.037 28 O -0.273 6.273 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.070 0.930 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.043 0.957 47 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -20.878 -6.277 9.555 23.803 hybrid contribution 0.031 -0.609 -0.903 1.089 sum -20.847 -6.885 8.652 23.598 Atomic orbital electron populations 1.20499 0.82579 1.05768 1.04693 1.22054 0.96968 0.85973 1.06179 1.43323 1.01970 1.10496 1.51660 0.68202 1.73597 1.03056 1.13333 1.18968 1.22152 0.94956 0.90811 1.13547 1.16772 0.81162 0.85875 0.76249 1.90761 1.86739 1.13808 1.52941 1.48729 1.04827 1.09136 1.71062 1.22878 1.00033 0.79683 0.99696 1.22583 0.94390 0.97955 0.99325 1.21431 0.94473 0.95028 0.97294 1.22079 0.80953 0.96897 1.00635 1.21390 0.98948 0.98132 0.94311 1.21919 0.97156 0.98891 0.98279 1.21162 0.94465 0.97788 0.85045 1.44447 1.46105 1.19455 1.23693 1.18839 1.38769 0.88689 0.90068 0.92292 1.25694 1.00887 0.97479 0.97999 1.69937 1.55631 1.22068 1.12246 0.86202 0.77286 0.82100 0.78515 1.21190 1.24251 1.18713 1.21153 0.89758 0.93036 0.94417 1.18026 0.88690 0.86050 1.10984 1.84861 1.88549 1.19385 1.34474 0.89243 0.88665 0.87972 0.93005 0.86544 0.89772 0.90799 0.92789 0.89461 0.91480 0.90782 0.89399 0.92330 0.94993 0.92446 0.93169 0.93569 0.95717 0.74266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.44 71.24 0.74 0.28 16 2 C 0.02 0.24 7.27 41.37 0.30 0.54 16 3 N -0.35 -5.45 6.87 -47.26 -0.32 -5.77 16 4 H 0.47 3.16 8.96 -220.00 -1.97 1.19 16 5 N -0.25 -6.16 9.21 -48.08 -0.44 -6.60 16 6 C -0.06 -1.62 7.00 42.45 0.30 -1.32 16 7 C 0.61 21.48 7.89 86.69 0.68 22.17 16 8 O -0.56 -22.54 16.87 -1.90 -0.03 -22.57 16 9 N -0.61 -20.58 3.30 -813.39 -2.68 -23.26 16 10 C 0.10 3.26 6.71 86.76 0.58 3.84 16 11 C -0.10 -3.47 4.99 31.69 0.16 -3.31 16 12 C -0.08 -2.70 0.63 -52.03 -0.03 -2.73 16 13 C 0.12 3.95 6.28 86.36 0.54 4.50 16 14 C -0.09 -2.53 4.34 30.47 0.13 -2.40 16 15 C -0.12 -3.53 5.89 30.70 0.18 -3.35 16 16 C 0.14 5.09 6.50 86.36 0.56 5.65 16 17 N -0.61 -27.75 2.29 -700.73 -1.61 -29.36 16 18 C -0.23 -12.83 10.03 84.03 0.84 -11.98 16 19 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 20 C -0.03 -1.48 5.23 84.86 0.44 -1.04 16 21 N -0.95 -59.10 13.97 21.65 0.30 -58.80 16 22 Si 0.93 47.29 24.33 68.60 1.67 48.96 16 23 H -0.28 -14.13 6.61 99.48 0.66 -13.47 16 24 H -0.31 -16.32 7.11 99.48 0.71 -15.62 16 25 H -0.26 -12.87 6.64 99.48 0.66 -12.21 16 26 C 0.14 5.98 2.52 86.01 0.22 6.20 16 27 C 0.02 0.44 7.28 22.57 0.16 0.60 16 28 O -0.47 -10.85 13.20 -92.41 -1.22 -12.07 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.12 3.43 5.47 -2.39 -0.01 3.42 16 34 H 0.08 2.45 7.63 -2.38 -0.02 2.43 16 35 H 0.07 2.95 7.48 -2.39 -0.02 2.93 16 36 H 0.05 1.94 7.68 -2.39 -0.02 1.92 16 37 H 0.09 2.76 7.60 -2.39 -0.02 2.74 16 38 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.06 1.76 7.13 -2.39 -0.02 1.74 16 42 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.06 2.12 7.93 -2.39 -0.02 2.10 16 44 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.05 2.21 4.53 -2.39 -0.01 2.20 16 46 H 0.03 1.05 7.04 -2.39 -0.02 1.04 16 47 H 0.40 5.80 9.07 -74.06 -0.67 5.13 16 Total: -1.00 -78.35 365.38 -0.24 -78.59 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -1.72 Total: 13.23 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 5.82 Total: 17.65 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -4.75 Total: -123.79 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -1.25 Total: -34.63 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.67 Total: 48.96 kcal Total: -78.35 -0.24 -78.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040166993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.806 kcal (2) G-P(sol) polarization free energy of solvation -78.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds