Wall clock time and date at job start Tue Mar 31 2020 18:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30456 * 125.98613 * 2 1 4 4 N 1.39933 * 108.89484 * 180.16313 * 3 2 1 5 5 C 1.46501 * 125.75279 * 179.80835 * 4 3 2 6 6 H 1.09000 * 110.83091 * 28.33941 * 5 4 3 7 7 C 1.54811 * 110.91000 * 264.69566 * 5 4 3 8 8 C 1.54099 * 104.18542 * 220.92367 * 7 5 4 9 9 O 1.43741 * 107.29516 * 357.96531 * 8 7 5 10 10 C 1.44379 * 106.97606 * 26.51788 * 9 8 7 11 11 C 1.34259 * 108.49332 * 359.54633 * 4 3 2 12 12 C 1.38045 * 107.41524 * 0.26482 * 11 4 3 13 13 C 1.47425 * 126.41190 * 179.97438 * 12 11 4 14 14 O 1.21609 * 119.99864 * 142.72277 * 13 12 11 15 15 N 1.34772 * 120.00443 * 322.72599 * 13 12 11 16 16 C 1.46503 * 119.99972 * 4.55338 * 15 13 12 17 17 C 1.46501 * 120.00434 * 184.55902 * 15 13 12 18 18 C 1.53943 * 113.74393 * 216.67428 * 17 15 13 19 19 N 1.47588 * 86.11742 * 222.04389 * 18 17 15 20 20 C 1.36935 * 134.49352 * 204.63974 * 19 18 17 21 21 H 1.07997 * 119.99934 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99837 * 359.97438 * 20 19 18 23 23 N 1.31616 * 120.00308 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99932 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47031 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47256 * 120.00144 * 24 22 20 27 27 H 1.48501 * 109.46805 * 239.99974 * 24 22 20 28 28 C 1.47580 * 91.01007 * 24.63909 * 19 18 17 29 29 H 1.09000 * 109.47149 * 270.32722 * 1 2 3 30 30 H 1.08999 * 109.47348 * 30.33160 * 1 2 3 31 31 H 1.09003 * 109.47052 * 150.33626 * 1 2 3 32 32 H 1.08997 * 110.48899 * 102.24087 * 7 5 4 33 33 H 1.09002 * 110.48566 * 339.59263 * 7 5 4 34 34 H 1.09000 * 109.88166 * 117.39742 * 8 7 5 35 35 H 1.09006 * 109.87607 * 238.39141 * 8 7 5 36 36 H 1.09000 * 110.61871 * 78.43569 * 10 9 8 37 37 H 1.08999 * 110.61808 * 201.27714 * 10 9 8 38 38 H 1.08005 * 126.29206 * 180.26080 * 11 4 3 39 39 H 1.09002 * 109.46838 * 84.84710 * 16 15 13 40 40 H 1.08999 * 109.47210 * 204.83967 * 16 15 13 41 41 H 1.08994 * 109.47144 * 324.84470 * 16 15 13 42 42 H 1.09001 * 112.94027 * 348.40596 * 17 15 13 43 43 H 1.08997 * 113.77073 * 336.34638 * 18 17 15 44 44 H 1.09003 * 113.77352 * 107.74315 * 18 17 15 45 45 H 0.96999 * 120.00158 * 179.97438 * 23 22 20 46 46 H 1.09001 * 113.76429 * 221.05378 * 28 19 18 47 47 H 1.09001 * 113.76612 * 89.66668 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6111 0.6443 -0.0038 5 6 4.7786 1.5292 -0.0090 6 1 4.5476 2.4787 0.4740 7 6 5.2950 1.7542 -1.4510 8 6 6.8291 1.6997 -1.3156 9 8 7.1288 1.5149 0.0781 10 6 5.9938 0.8455 0.6682 11 6 3.6439 -0.6978 0.0040 12 6 2.3373 -1.1431 0.0066 13 6 1.8917 -2.5484 0.0142 14 8 0.9092 -2.8712 0.6540 15 7 2.5731 -3.4753 -0.6878 16 6 3.8124 -3.1073 -1.3770 17 6 2.0747 -4.8509 -0.7618 18 6 3.1873 -5.9148 -0.7511 19 7 2.4056 -6.5983 -1.7999 20 6 2.3068 -7.8937 -2.2325 21 1 1.6400 -8.1424 -3.0448 22 6 3.0645 -8.8871 -1.6276 23 7 3.8782 -8.5839 -0.6386 24 14 2.9302 -10.6543 -2.2181 25 1 1.9537 -10.7303 -3.3343 26 1 4.2588 -11.1210 -2.6895 27 1 2.4710 -11.5164 -1.0996 28 6 1.7733 -5.3247 -2.1951 29 1 -0.3633 0.0059 1.0276 30 1 -0.3634 0.8870 -0.5190 31 1 -0.3633 -0.8930 -0.5086 32 1 4.9790 2.7293 -1.8216 33 1 4.9420 0.9615 -2.1106 34 1 7.2228 0.8636 -1.8935 35 1 7.2658 2.6334 -1.6702 36 1 6.0132 -0.2194 0.4366 37 1 5.9737 1.0023 1.7466 38 1 4.5299 -1.3156 0.0075 39 1 4.6480 -3.1689 -0.6798 40 1 3.9823 -3.7908 -2.2089 41 1 3.7291 -2.0884 -1.7551 42 1 1.2686 -5.0493 -0.0554 43 1 4.1531 -5.5440 -1.0943 44 1 3.2522 -6.4733 0.1827 45 1 4.4074 -9.2781 -0.2156 46 1 0.7091 -5.4121 -2.4144 47 1 2.3237 -4.7806 -2.9627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042722441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:05 Heat of formation + Delta-G solvation = 72.224106 kcal Electronic energy + Delta-G solvation = -29255.703947 eV Core-core repulsion = 25250.100747 eV Total energy + Delta-G solvation = -4005.603200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.83874 -39.90095 -39.27930 -37.43874 -34.58947 -34.41688 -32.09755 -31.68925 -30.38122 -29.87337 -27.68639 -27.28390 -26.74135 -24.80911 -24.51695 -23.24705 -22.50945 -21.19210 -20.48920 -19.53632 -18.66581 -17.63719 -17.14366 -16.94222 -16.54102 -15.88781 -15.74127 -15.49516 -15.00659 -14.92120 -14.68993 -14.53968 -14.01603 -13.81318 -13.54542 -13.32835 -13.25103 -12.76832 -12.60640 -12.47415 -12.31695 -12.21067 -11.98495 -11.85569 -11.77719 -11.54355 -11.50856 -11.30785 -10.96925 -10.88855 -10.71976 -10.34722 -10.27098 -10.05846 -9.58257 -9.53212 -9.49489 -8.82854 -8.74659 -8.11450 -6.92798 -5.80678 -3.13419 1.38076 1.90401 2.14414 3.23129 3.27130 3.37708 3.42686 3.45653 3.48089 3.83116 3.86647 4.20992 4.31095 4.40561 4.44384 4.47033 4.56769 4.94120 4.96938 5.02640 5.10834 5.17123 5.20473 5.25702 5.29494 5.33859 5.41046 5.44063 5.48436 5.63153 5.70793 5.78910 5.81809 5.85045 6.08321 6.10390 6.18665 6.39771 6.43221 6.57179 6.59368 6.79374 7.18130 7.33637 7.42942 7.51401 7.79830 7.93856 8.53122 9.00834 9.66739 10.53748 11.36530 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015306 B = 0.002755 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.859880 B =10159.058700 C =11448.610523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.128 3.872 3 N -0.299 5.299 4 N -0.355 5.355 5 C 0.128 3.872 6 H 0.122 0.878 7 C -0.168 4.168 8 C 0.046 3.954 9 O -0.364 6.364 10 C 0.039 3.961 11 C 0.089 3.911 12 C -0.269 4.269 13 C 0.588 3.412 14 O -0.540 6.540 15 N -0.595 5.595 16 C 0.075 3.925 17 C 0.093 3.907 18 C 0.157 3.843 19 N -0.606 5.606 20 C -0.222 4.222 21 H 0.082 0.918 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.108 3.892 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.184 0.816 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.117 0.883 43 H 0.031 0.969 44 H 0.077 0.923 45 H 0.254 0.746 46 H 0.047 0.953 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.309 23.797 -0.362 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.039 4.039 3 N -0.120 5.120 4 N -0.135 5.135 5 C 0.025 3.975 6 H 0.140 0.860 7 C -0.207 4.207 8 C -0.031 4.031 9 O -0.282 6.282 10 C -0.039 4.039 11 C -0.060 4.060 12 C -0.284 4.284 13 C 0.376 3.624 14 O -0.418 6.418 15 N -0.327 5.327 16 C -0.068 4.068 17 C -0.011 4.011 18 C 0.030 3.970 19 N -0.332 5.332 20 C -0.349 4.349 21 H 0.100 0.900 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.744 3.256 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.216 1.216 28 C -0.019 4.019 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.201 0.799 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.049 0.951 44 H 0.095 0.905 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.228 24.688 0.062 25.048 hybrid contribution 0.191 -1.898 -0.608 2.002 sum 4.418 22.791 -0.546 23.221 Atomic orbital electron populations 1.20234 0.85707 1.03368 1.03726 1.22433 0.97134 0.88744 0.95633 1.77158 0.85637 1.22518 1.26665 1.48169 1.05281 1.04154 1.55899 1.22905 0.82429 0.94560 0.97576 0.85981 1.23406 0.96093 1.04943 0.96236 1.23220 0.93774 1.02798 0.83318 1.88982 1.38341 1.79027 1.21811 1.23914 0.83180 0.97132 0.99642 1.23238 0.99178 0.85013 0.98580 1.20333 0.92044 0.94866 1.21191 1.17329 0.82867 0.83390 0.78805 1.90755 1.27316 1.81107 1.42642 1.47867 1.24462 1.10358 1.50030 1.21932 0.86133 1.00982 0.97794 1.24039 1.00325 0.77895 0.98811 1.22638 0.91623 0.88049 0.94648 1.45659 1.47610 1.01279 1.38691 1.19039 1.20598 0.81055 1.14253 0.89998 1.24800 0.98815 0.98164 0.98584 1.69821 1.29253 1.31999 1.25623 0.86023 0.77249 0.84448 0.77893 1.20416 1.21736 1.21615 1.22988 0.97214 0.87518 0.94224 0.89816 0.90987 0.89740 0.88906 0.89378 0.91305 0.88896 0.90723 0.87182 0.79873 0.92896 0.90023 0.91794 0.86483 0.95141 0.90483 0.93615 0.93447 0.94780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 9.91 36.00 0.36 -0.46 16 2 C 0.13 1.69 7.26 -82.02 -0.60 1.10 16 3 N -0.30 -3.74 12.50 33.89 0.42 -3.32 16 4 N -0.36 -3.58 3.58 -52.37 -0.19 -3.77 16 5 C 0.13 0.91 4.26 -65.92 -0.28 0.63 16 6 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 7 C -0.17 -0.96 6.76 -25.20 -0.17 -1.13 16 8 C 0.05 0.25 7.70 37.73 0.29 0.54 16 9 O -0.36 -2.79 11.52 -35.23 -0.41 -3.20 16 10 C 0.04 0.25 7.05 38.21 0.27 0.52 16 11 C 0.09 0.94 8.30 -16.56 -0.14 0.80 16 12 C -0.27 -3.69 5.38 -105.07 -0.57 -4.25 16 13 C 0.59 9.79 7.38 -12.52 -0.09 9.70 16 14 O -0.54 -10.75 15.81 5.27 0.08 -10.67 16 15 N -0.60 -9.64 3.09 -177.01 -0.55 -10.18 16 16 C 0.08 0.94 7.73 59.85 0.46 1.40 16 17 C 0.09 1.83 4.41 -70.14 -0.31 1.52 16 18 C 0.16 3.61 6.90 -2.97 -0.02 3.59 16 19 N -0.61 -15.40 3.70 -178.08 -0.66 -16.06 16 20 C -0.22 -6.18 10.70 -15.06 -0.16 -6.34 16 21 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 23 N -0.92 -26.92 11.38 55.49 0.63 -26.29 16 24 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 C 0.11 2.22 8.44 -2.98 -0.03 2.20 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.04 7.70 -51.93 -0.40 0.64 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.56 8.06 -51.93 -0.42 0.14 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.44 6.24 -51.93 -0.32 0.12 16 37 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.18 1.47 4.95 -52.48 -0.26 1.21 16 39 H 0.05 0.57 7.32 -51.93 -0.38 0.19 16 40 H 0.08 1.11 6.16 -51.93 -0.32 0.79 16 41 H 0.06 0.66 5.88 -51.93 -0.31 0.36 16 42 H 0.12 2.53 7.22 -51.93 -0.38 2.15 16 43 H 0.03 0.68 6.59 -51.93 -0.34 0.34 16 44 H 0.08 2.01 7.16 -51.93 -0.37 1.63 16 45 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.03 0.66 7.05 -51.93 -0.37 0.30 16 LS Contribution 375.76 15.07 5.66 5.66 Total: -1.00 -34.48 375.76 -7.89 -42.37 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.79 Total: -1.01 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -1.07 Total: 9.51 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.34 Total: -59.62 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.32 Total: -13.86 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.48 -7.89 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042722441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.593 kcal (2) G-P(sol) polarization free energy of solvation -34.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds