Wall clock time and date at job start Tue Mar 31 2020 18:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30456 * 125.98613 * 2 1 4 4 N 1.39933 * 108.89484 * 180.16313 * 3 2 1 5 5 C 1.46501 * 125.75279 * 179.80835 * 4 3 2 6 6 H 1.09000 * 110.83091 * 28.33941 * 5 4 3 7 7 C 1.54811 * 110.91000 * 264.69566 * 5 4 3 8 8 C 1.54099 * 104.18542 * 220.92367 * 7 5 4 9 9 O 1.43741 * 107.29516 * 357.96531 * 8 7 5 10 10 C 1.44379 * 106.97606 * 26.51788 * 9 8 7 11 11 C 1.34259 * 108.49332 * 359.54633 * 4 3 2 12 12 C 1.38045 * 107.41524 * 0.26482 * 11 4 3 13 13 C 1.47425 * 126.41190 * 179.97438 * 12 11 4 14 14 O 1.21609 * 119.99864 * 142.72277 * 13 12 11 15 15 N 1.34772 * 120.00443 * 322.72599 * 13 12 11 16 16 C 1.46503 * 119.99972 * 4.55338 * 15 13 12 17 17 C 1.46501 * 120.00434 * 184.55902 * 15 13 12 18 18 C 1.53943 * 113.74393 * 216.67428 * 17 15 13 19 19 N 1.47588 * 86.11742 * 222.04389 * 18 17 15 20 20 C 1.36935 * 134.49352 * 204.63974 * 19 18 17 21 21 H 1.07997 * 119.99934 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99837 * 359.97438 * 20 19 18 23 23 N 1.31616 * 120.00308 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99932 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47031 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47256 * 120.00144 * 24 22 20 27 27 H 1.48501 * 109.46805 * 239.99974 * 24 22 20 28 28 C 1.47580 * 91.01007 * 24.63909 * 19 18 17 29 29 H 1.09000 * 109.47149 * 270.32722 * 1 2 3 30 30 H 1.08999 * 109.47348 * 30.33160 * 1 2 3 31 31 H 1.09003 * 109.47052 * 150.33626 * 1 2 3 32 32 H 1.08997 * 110.48899 * 102.24087 * 7 5 4 33 33 H 1.09002 * 110.48566 * 339.59263 * 7 5 4 34 34 H 1.09000 * 109.88166 * 117.39742 * 8 7 5 35 35 H 1.09006 * 109.87607 * 238.39141 * 8 7 5 36 36 H 1.09000 * 110.61871 * 78.43569 * 10 9 8 37 37 H 1.08999 * 110.61808 * 201.27714 * 10 9 8 38 38 H 1.08005 * 126.29206 * 180.26080 * 11 4 3 39 39 H 1.09002 * 109.46838 * 84.84710 * 16 15 13 40 40 H 1.08999 * 109.47210 * 204.83967 * 16 15 13 41 41 H 1.08994 * 109.47144 * 324.84470 * 16 15 13 42 42 H 1.09001 * 112.94027 * 348.40596 * 17 15 13 43 43 H 1.08997 * 113.77073 * 336.34638 * 18 17 15 44 44 H 1.09003 * 113.77352 * 107.74315 * 18 17 15 45 45 H 0.96999 * 120.00158 * 179.97438 * 23 22 20 46 46 H 1.09001 * 113.76429 * 221.05378 * 28 19 18 47 47 H 1.09001 * 113.76612 * 89.66668 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6111 0.6443 -0.0038 5 6 4.7786 1.5292 -0.0090 6 1 4.5476 2.4787 0.4740 7 6 5.2950 1.7542 -1.4510 8 6 6.8291 1.6997 -1.3156 9 8 7.1288 1.5149 0.0781 10 6 5.9938 0.8455 0.6682 11 6 3.6439 -0.6978 0.0040 12 6 2.3373 -1.1431 0.0066 13 6 1.8917 -2.5484 0.0142 14 8 0.9092 -2.8712 0.6540 15 7 2.5731 -3.4753 -0.6878 16 6 3.8124 -3.1073 -1.3770 17 6 2.0747 -4.8509 -0.7618 18 6 3.1873 -5.9148 -0.7511 19 7 2.4056 -6.5983 -1.7999 20 6 2.3068 -7.8937 -2.2325 21 1 1.6400 -8.1424 -3.0448 22 6 3.0645 -8.8871 -1.6276 23 7 3.8782 -8.5839 -0.6386 24 14 2.9302 -10.6543 -2.2181 25 1 1.9537 -10.7303 -3.3343 26 1 4.2588 -11.1210 -2.6895 27 1 2.4710 -11.5164 -1.0996 28 6 1.7733 -5.3247 -2.1951 29 1 -0.3633 0.0059 1.0276 30 1 -0.3634 0.8870 -0.5190 31 1 -0.3633 -0.8930 -0.5086 32 1 4.9790 2.7293 -1.8216 33 1 4.9420 0.9615 -2.1106 34 1 7.2228 0.8636 -1.8935 35 1 7.2658 2.6334 -1.6702 36 1 6.0132 -0.2194 0.4366 37 1 5.9737 1.0023 1.7466 38 1 4.5299 -1.3156 0.0075 39 1 4.6480 -3.1689 -0.6798 40 1 3.9823 -3.7908 -2.2089 41 1 3.7291 -2.0884 -1.7551 42 1 1.2686 -5.0493 -0.0554 43 1 4.1531 -5.5440 -1.0943 44 1 3.2522 -6.4733 0.1827 45 1 4.4074 -9.2781 -0.2156 46 1 0.7091 -5.4121 -2.4144 47 1 2.3237 -4.7806 -2.9627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042722441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:05 Heat of formation + Delta-G solvation = 48.505744 kcal Electronic energy + Delta-G solvation = -29256.732453 eV Core-core repulsion = 25250.100747 eV Total energy + Delta-G solvation = -4006.631705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.73446 -40.97248 -40.21106 -39.00872 -35.95981 -35.23514 -34.05160 -32.39655 -31.44849 -30.45209 -29.45473 -28.17192 -27.90846 -26.58673 -25.73235 -24.42490 -23.25226 -22.24567 -21.43851 -20.68375 -20.05353 -18.82081 -18.52508 -17.86535 -17.63768 -17.20642 -16.82053 -16.55196 -16.23607 -15.81916 -15.77021 -15.64556 -15.45694 -14.74522 -14.63246 -14.41681 -14.14930 -14.05760 -13.66621 -13.64797 -13.39809 -13.22745 -13.17523 -13.12176 -12.91410 -12.81250 -12.66007 -12.56329 -12.45198 -12.07667 -12.05104 -11.93007 -11.80482 -11.52960 -10.89107 -10.87574 -10.80778 -10.38144 -9.74558 -9.47969 -8.94489 -7.91871 -5.25755 0.48042 1.09108 1.14094 1.46928 1.48395 1.58449 1.96250 2.23788 2.50182 2.77737 3.21959 3.28586 3.35791 3.43745 3.52832 3.64266 3.77504 3.79183 3.90707 4.02194 4.10775 4.18259 4.26005 4.34602 4.45802 4.50934 4.54550 4.61186 4.64088 4.72779 4.74597 4.78055 4.83835 4.85403 4.88793 4.91143 4.92783 4.99742 5.21199 5.26176 5.45061 5.49020 5.62471 5.73106 5.83617 5.91022 6.44883 6.55950 6.90657 7.23410 7.58369 8.51982 9.25190 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015306 B = 0.002755 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.859880 B =10159.058700 C =11448.610523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.117 3.883 3 N -0.311 5.311 4 N -0.344 5.344 5 C 0.121 3.879 6 H 0.127 0.873 7 C -0.161 4.161 8 C 0.045 3.955 9 O -0.382 6.382 10 C 0.040 3.960 11 C 0.112 3.888 12 C -0.298 4.298 13 C 0.590 3.410 14 O -0.582 6.582 15 N -0.594 5.594 16 C 0.070 3.930 17 C 0.118 3.882 18 C 0.162 3.838 19 N -0.636 5.636 20 C -0.234 4.234 21 H 0.085 0.915 22 C -0.064 4.064 23 N -0.951 5.951 24 Si 0.980 3.020 25 H -0.266 1.266 26 H -0.290 1.290 27 H -0.293 1.293 28 C 0.115 3.885 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.213 0.787 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.042 0.958 44 H 0.039 0.961 45 H 0.250 0.750 46 H 0.050 0.950 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.557 25.442 -1.547 26.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.050 4.050 3 N -0.133 5.133 4 N -0.123 5.123 5 C 0.020 3.980 6 H 0.145 0.855 7 C -0.199 4.199 8 C -0.032 4.032 9 O -0.300 6.300 10 C -0.038 4.038 11 C -0.039 4.039 12 C -0.313 4.313 13 C 0.380 3.620 14 O -0.463 6.463 15 N -0.326 5.326 16 C -0.072 4.072 17 C 0.013 3.987 18 C 0.036 3.964 19 N -0.363 5.363 20 C -0.362 4.362 21 H 0.103 0.897 22 C -0.257 4.257 23 N -0.599 5.599 24 Si 0.808 3.192 25 H -0.190 1.190 26 H -0.216 1.216 27 H -0.220 1.220 28 C -0.011 4.011 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.124 0.876 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.229 0.771 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.487 26.405 -1.155 26.994 hybrid contribution -0.147 -2.269 -0.235 2.286 sum 5.340 24.136 -1.390 24.759 Atomic orbital electron populations 1.20226 0.85266 1.03551 1.03808 1.22642 0.97823 0.88788 0.95756 1.77133 0.86647 1.22413 1.27116 1.48406 1.05309 1.04417 1.54130 1.23198 0.81518 0.94331 0.98966 0.85493 1.23373 0.96216 1.05368 0.94988 1.23343 0.93492 1.03883 0.82440 1.88975 1.38803 1.79252 1.22955 1.23976 0.82420 0.97395 0.99978 1.23524 0.98856 0.85378 0.96140 1.20082 0.93613 0.93089 1.24543 1.17698 0.82098 0.84435 0.77781 1.90729 1.29251 1.81928 1.44392 1.47787 1.25703 1.08680 1.50389 1.22182 0.84956 1.02194 0.97824 1.23295 0.98153 0.79548 0.97733 1.22511 0.92888 0.88468 0.92554 1.45958 1.48635 1.01983 1.39715 1.19406 1.20236 0.82574 1.14028 0.89698 1.25627 0.98989 1.02080 0.99027 1.69997 1.30241 1.32839 1.26869 0.84988 0.77277 0.79443 0.77461 1.18993 1.21643 1.22048 1.23080 0.97324 0.85622 0.95110 0.89824 0.89121 0.91122 0.88035 0.89611 0.90587 0.87596 0.89903 0.86563 0.77092 0.90659 0.90828 0.89106 0.88854 0.94069 0.94272 0.94144 0.93179 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.58 9.91 71.24 0.71 -0.87 16 2 C 0.12 2.97 7.26 43.51 0.32 3.28 16 3 N -0.31 -7.22 12.50 -46.68 -0.58 -7.81 16 4 N -0.34 -6.02 3.58 -319.59 -1.14 -7.16 16 5 C 0.12 1.37 4.26 46.29 0.20 1.57 16 6 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 7 C -0.16 -1.34 6.76 31.58 0.21 -1.12 16 8 C 0.04 0.35 7.70 72.35 0.56 0.91 16 9 O -0.38 -4.82 11.52 -148.98 -1.72 -6.54 16 10 C 0.04 0.40 7.05 72.66 0.51 0.91 16 11 C 0.11 2.05 8.30 84.28 0.70 2.75 16 12 C -0.30 -7.74 5.38 -20.15 -0.11 -7.85 16 13 C 0.59 19.40 7.38 86.66 0.64 20.04 16 14 O -0.58 -23.73 15.81 -4.06 -0.06 -23.79 16 15 N -0.59 -18.69 3.09 -832.21 -2.57 -21.27 16 16 C 0.07 1.57 7.73 127.77 0.99 2.56 16 17 C 0.12 4.69 4.41 46.74 0.21 4.90 16 18 C 0.16 7.57 6.90 86.48 0.60 8.17 16 19 N -0.64 -32.57 3.70 -717.31 -2.65 -35.23 16 20 C -0.23 -13.12 10.70 84.03 0.90 -12.22 16 21 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 22 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16 23 N -0.95 -56.76 11.38 21.65 0.25 -56.51 16 24 Si 0.98 45.48 29.55 68.60 2.03 47.51 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 27 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 28 C 0.11 4.67 8.44 86.48 0.73 5.40 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.77 7.70 -2.39 -0.02 1.76 16 32 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.79 8.06 -2.39 -0.02 0.77 16 34 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.08 0.68 6.24 -2.39 -0.01 0.67 16 37 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.21 2.55 4.95 -2.91 -0.01 2.54 16 39 H 0.08 1.37 7.32 -2.39 -0.02 1.35 16 40 H 0.07 1.81 6.16 -2.39 -0.01 1.79 16 41 H 0.09 1.56 5.88 -2.39 -0.01 1.54 16 42 H 0.09 4.19 7.22 -2.39 -0.02 4.18 16 43 H 0.04 1.83 6.59 -2.39 -0.02 1.82 16 44 H 0.04 2.12 7.16 -2.39 -0.02 2.10 16 45 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 46 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.06 2.14 7.05 -2.39 -0.02 2.12 16 Total: -1.00 -75.85 375.76 2.15 -73.70 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.99 Total: 11.82 kcal Atomic # 6 Polarization: 17.66 SS G_CDS: 7.62 Total: 25.27 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -6.71 Total: -127.97 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -1.78 Total: -30.33 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -75.85 2.15 -73.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042722441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.203 kcal (2) G-P(sol) polarization free energy of solvation -75.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds