Wall clock time and date at job start Tue Mar 31 2020 19:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41258 * 126.70702 * 2 1 4 4 C 1.36819 * 103.85083 * 180.12394 * 3 2 1 5 5 C 1.47510 * 126.94561 * 179.90259 * 4 3 2 6 6 O 1.21578 * 120.00274 * 6.94798 * 5 4 3 7 7 N 1.34777 * 120.00026 * 186.94371 * 5 4 3 8 8 C 1.47085 * 120.88164 * 175.74803 * 7 5 4 9 9 C 1.53237 * 108.51803 * 231.20668 * 8 7 5 10 10 N 1.46894 * 109.34305 * 306.16657 * 9 8 7 11 11 C 1.46899 * 111.00213 * 187.25508 * 10 9 8 12 12 H 1.09003 * 110.88878 * 303.88007 * 11 10 9 13 13 C 1.55157 * 111.00429 * 180.02562 * 11 10 9 14 14 C 1.54325 * 102.94209 * 206.41972 * 13 11 10 15 15 N 1.47027 * 107.26968 * 22.19971 * 14 13 11 16 16 C 1.36934 * 125.65101 * 181.02267 * 15 14 13 17 17 H 1.07992 * 120.00515 * 155.02318 * 16 15 14 18 18 C 1.38818 * 119.99718 * 335.02885 * 16 15 14 19 19 N 1.31616 * 120.00027 * 140.54124 * 18 16 15 20 20 Si 1.86806 * 119.99680 * 320.53495 * 18 16 15 21 21 H 1.48499 * 109.47156 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46849 * 240.00361 * 20 18 16 23 23 H 1.48497 * 109.46806 * 120.00609 * 20 18 16 24 24 C 1.47423 * 108.70280 * 1.28021 * 15 14 13 25 25 C 1.46903 * 111.26494 * 63.10715 * 10 9 8 26 26 C 1.47082 * 120.88081 * 355.76893 * 7 5 4 27 27 O 1.34641 * 106.11209 * 359.64627 * 4 3 2 28 28 N 1.20890 * 111.46417 * 0.23736 * 27 4 3 29 29 H 1.09007 * 109.46855 * 270.25283 * 1 2 3 30 30 H 1.08998 * 109.47571 * 30.25635 * 1 2 3 31 31 H 1.09004 * 109.47033 * 150.25553 * 1 2 3 32 32 H 1.08000 * 128.07654 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.62889 * 111.49479 * 8 7 5 34 34 H 1.08998 * 109.78567 * 351.00813 * 8 7 5 35 35 H 1.09005 * 109.49054 * 186.20606 * 9 8 7 36 36 H 1.09005 * 109.51774 * 66.14707 * 9 8 7 37 37 H 1.09000 * 110.71982 * 88.06258 * 13 11 10 38 38 H 1.08998 * 110.87281 * 324.85523 * 13 11 10 39 39 H 1.08993 * 109.88930 * 262.77491 * 14 13 11 40 40 H 1.09004 * 110.00703 * 141.67821 * 14 13 11 41 41 H 0.96993 * 120.00038 * 5.20157 * 19 18 16 42 42 H 1.08996 * 110.36830 * 94.48628 * 24 15 14 43 43 H 1.08999 * 110.36743 * 216.81354 * 24 15 14 44 44 H 1.09000 * 109.49780 * 56.85864 * 25 10 9 45 45 H 1.09004 * 109.48897 * 176.93419 * 25 10 9 46 46 H 1.08999 * 109.62692 * 248.50146 * 26 7 5 47 47 H 1.08998 * 109.62754 * 8.88702 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6010 -0.0029 5 6 4.8870 1.3430 -0.0061 6 8 4.8870 2.5521 0.1209 7 7 6.0518 0.6805 -0.1498 8 6 7.3266 1.4076 -0.2489 9 6 8.0801 0.9028 -1.4841 10 7 8.2028 -0.5594 -1.4152 11 6 9.0659 -1.0665 -2.4903 12 1 8.6972 -0.7509 -3.4663 13 6 9.1951 -2.6110 -2.4180 14 6 10.5623 -2.8750 -3.0832 15 7 11.3406 -1.6311 -2.9900 16 6 12.6048 -1.4419 -3.4810 17 1 12.9425 -0.4479 -3.7346 18 6 13.4523 -2.5278 -3.6530 19 7 14.2331 -2.5922 -4.7106 20 14 13.4846 -3.8976 -2.3833 21 1 12.5197 -3.5889 -1.2975 22 1 14.8512 -4.0125 -1.8139 23 1 13.1081 -5.1804 -3.0296 24 6 10.5369 -0.6231 -2.2749 25 6 6.8846 -1.2069 -1.4488 26 6 6.0820 -0.7887 -0.2122 27 8 3.4540 -0.7360 0.0037 28 7 2.2847 -1.0432 0.0052 29 1 -0.3633 0.0045 1.0277 30 1 -0.3634 0.8876 -0.5178 31 1 -0.3633 -0.8923 -0.5099 32 1 2.0678 2.1746 0.0004 33 1 7.9233 1.2239 0.6445 34 1 7.1352 2.4761 -0.3481 35 1 9.0736 1.3503 -1.5121 36 1 7.5310 1.1798 -2.3841 37 1 8.3939 -3.0917 -2.9794 38 1 9.1975 -2.9525 -1.3829 39 1 10.4196 -3.1456 -4.1294 40 1 11.0826 -3.6777 -2.5605 41 1 14.2723 -1.8472 -5.3305 42 1 10.7842 -0.6241 -1.2134 43 1 10.7009 0.3660 -2.7026 44 1 6.3517 -0.9007 -2.3490 45 1 7.0112 -2.2896 -1.4512 46 1 6.5592 -1.1834 0.6848 47 1 5.0647 -1.1730 -0.2851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046001401.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:46 Heat of formation + Delta-G solvation = 62.581376 kcal Electronic energy + Delta-G solvation = -29206.077695 eV Core-core repulsion = 25200.056355 eV Total energy + Delta-G solvation = -4006.021340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.13583 -41.40538 -40.01746 -38.29022 -36.16728 -35.59086 -34.29492 -33.39612 -32.21627 -31.18259 -29.84403 -29.64840 -27.75613 -25.91738 -24.93744 -24.47109 -23.93725 -22.13354 -21.99817 -21.31290 -20.54506 -19.54118 -18.95520 -18.80616 -17.87374 -17.24876 -17.04528 -16.90179 -16.38768 -15.95530 -15.77580 -15.51381 -15.38057 -15.10356 -14.86004 -14.55260 -14.47988 -14.25971 -14.21573 -13.92973 -13.69033 -13.62274 -13.33819 -13.02669 -12.71104 -12.62447 -12.50797 -12.38038 -12.24567 -12.08731 -11.85719 -11.73187 -11.59858 -11.43463 -11.27898 -11.15261 -10.87868 -10.38035 -10.01839 -9.36067 -9.18403 -8.57205 -5.43340 -0.35905 0.97653 1.32725 1.45133 1.53751 1.73593 1.75567 1.90839 2.51977 2.68528 2.96888 3.03653 3.13021 3.53184 3.63950 3.67638 3.83141 3.89128 3.91030 4.02617 4.15466 4.19045 4.26754 4.30331 4.34678 4.44005 4.51967 4.61491 4.68863 4.71381 4.73797 4.80950 4.84666 4.86034 4.87987 4.96303 5.00380 5.05643 5.16982 5.18641 5.23802 5.29257 5.73858 5.90868 6.02216 6.08755 6.17877 6.62368 6.83160 7.02604 7.54029 8.24974 8.74365 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026753 B = 0.002386 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.379724 B =11730.291293 C =12340.927270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.016 3.984 3 C -0.145 4.145 4 C -0.094 4.094 5 C 0.604 3.396 6 O -0.546 6.546 7 N -0.596 5.596 8 C 0.125 3.875 9 C 0.043 3.957 10 N -0.526 5.526 11 C 0.087 3.913 12 H 0.045 0.955 13 C -0.108 4.108 14 C 0.121 3.879 15 N -0.622 5.622 16 C -0.346 4.346 17 H 0.031 0.969 18 C -0.054 4.054 19 N -0.926 5.926 20 Si 1.091 2.909 21 H -0.262 1.262 22 H -0.294 1.294 23 H -0.283 1.283 24 C 0.140 3.860 25 C 0.041 3.959 26 C 0.104 3.896 27 O 0.109 5.891 28 N -0.369 5.369 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.200 0.800 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.034 0.966 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.019 0.981 40 H 0.021 0.979 41 H 0.252 0.748 42 H 0.033 0.967 43 H 0.027 0.973 44 H 0.036 0.964 45 H 0.110 0.890 46 H 0.098 0.902 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.738 4.883 12.371 32.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.142 4.142 3 C -0.167 4.167 4 C -0.159 4.159 5 C 0.391 3.609 6 O -0.425 6.425 7 N -0.327 5.327 8 C 0.003 3.997 9 C -0.085 4.085 10 N -0.252 5.252 11 C -0.022 4.022 12 H 0.063 0.937 13 C -0.146 4.146 14 C -0.004 4.004 15 N -0.350 5.350 16 C -0.474 4.474 17 H 0.048 0.952 18 C -0.253 4.253 19 N -0.566 5.566 20 Si 0.916 3.084 21 H -0.187 1.187 22 H -0.221 1.221 23 H -0.210 1.210 24 C 0.014 3.986 25 C -0.087 4.087 26 C -0.018 4.018 27 O 0.041 5.959 28 N -0.076 5.076 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.101 0.899 32 H 0.217 0.783 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.052 0.948 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.037 0.963 40 H 0.039 0.961 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.046 0.954 44 H 0.054 0.946 45 H 0.128 0.872 46 H 0.116 0.884 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -28.989 2.679 13.185 31.959 hybrid contribution -0.111 2.762 -1.678 3.234 sum -29.099 5.441 11.507 31.761 Atomic orbital electron populations 1.20420 0.82738 1.05366 1.04996 1.24217 1.00883 0.87465 1.01593 1.23208 0.89411 1.02757 1.01324 1.24107 0.97172 0.84346 1.10324 1.16776 0.81403 0.85658 0.77087 1.90846 1.86124 1.13503 1.52005 1.48202 1.06062 1.08719 1.69756 1.21818 0.82069 0.97085 0.98756 1.22479 1.01063 0.88141 0.96849 1.61919 1.12613 1.05032 1.45594 1.22559 0.92227 0.95574 0.91816 0.93711 1.22605 0.95454 0.94379 1.02128 1.21641 0.92027 0.89178 0.97582 1.44734 1.13183 1.11241 1.65802 1.19534 0.91150 0.95077 1.41680 0.95161 1.27176 0.94630 1.03833 0.99654 1.71062 1.46581 1.29827 1.09117 0.83409 0.75951 0.73494 0.75573 1.18714 1.22127 1.20963 1.21686 0.89782 0.92059 0.95038 1.22558 0.88067 1.01351 0.96759 1.22464 1.02340 0.77374 0.99667 1.85035 1.21017 1.21885 1.67926 1.73725 0.90054 1.25552 1.18261 0.88432 0.87621 0.89922 0.78257 0.88933 0.88466 0.89131 0.94790 0.88611 0.89075 0.96295 0.96076 0.93789 0.94941 0.95436 0.94611 0.87224 0.88352 0.86999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.47 71.23 0.75 0.24 16 2 C 0.02 0.23 7.31 43.55 0.32 0.55 16 3 C -0.15 -2.17 10.92 22.68 0.25 -1.92 16 4 C -0.09 -1.74 6.98 24.38 0.17 -1.57 16 5 C 0.60 12.95 7.70 86.69 0.67 13.62 16 6 O -0.55 -14.52 16.40 -3.96 -0.06 -14.59 16 7 N -0.60 -11.43 3.01 -821.73 -2.47 -13.91 16 8 C 0.12 2.40 6.58 86.35 0.57 2.96 16 9 C 0.04 0.95 5.52 86.38 0.48 1.42 16 10 N -0.53 -12.29 4.52 -861.44 -3.90 -16.19 16 11 C 0.09 2.61 2.73 46.39 0.13 2.74 16 12 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 13 C -0.11 -3.16 5.03 31.78 0.16 -3.00 16 14 C 0.12 5.06 6.17 86.73 0.53 5.59 16 15 N -0.62 -30.52 3.07 -691.55 -2.12 -32.65 16 16 C -0.35 -20.31 10.18 84.04 0.86 -19.45 16 17 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 18 C -0.05 -3.22 5.22 84.86 0.44 -2.77 16 19 N -0.93 -58.70 13.70 21.65 0.30 -58.41 16 20 Si 1.09 53.00 26.26 68.60 1.80 54.80 16 21 H -0.26 -11.80 6.59 99.48 0.66 -11.15 16 22 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 C 0.14 5.50 5.96 86.93 0.52 6.02 16 25 C 0.04 0.75 5.43 86.38 0.47 1.21 16 26 C 0.10 1.66 6.48 86.35 0.56 2.22 16 27 O 0.11 1.97 7.78 65.83 0.51 2.48 16 28 N -0.37 -6.85 12.04 -48.86 -0.59 -7.43 16 29 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.20 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.10 1.93 7.10 -2.39 -0.02 1.91 16 35 H 0.09 2.09 7.05 -2.38 -0.02 2.08 16 36 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.10 2.23 7.96 -2.39 -0.02 2.21 16 38 H 0.09 2.45 8.10 -2.39 -0.02 2.43 16 39 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.02 0.92 4.33 -2.38 -0.01 0.91 16 41 H 0.25 16.12 8.73 -92.71 -0.81 15.31 16 42 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.03 1.11 7.87 -2.39 -0.02 1.09 16 44 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.11 1.74 6.64 -2.38 -0.02 1.72 16 46 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 47 H 0.11 1.67 3.93 -38.13 -0.15 1.52 16 Total: -1.00 -73.75 369.52 1.07 -72.68 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 0.75 Total: 5.35 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 6.86 Total: 7.87 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -8.79 Total: -128.59 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.45 Total: -12.11 kcal Atomic # 14 Polarization: 53.00 SS G_CDS: 1.80 Total: 54.80 kcal Total: -73.75 1.07 -72.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046001401.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.257 kcal (2) G-P(sol) polarization free energy of solvation -73.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds