Wall clock time and date at job start Tue Mar 31 2020 19:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41254 * 126.70486 * 2 1 4 4 C 1.36826 * 103.84898 * 180.02562 * 3 2 1 5 5 C 1.47509 * 126.94625 * 179.97438 * 4 3 2 6 6 O 1.21588 * 120.00020 * 6.21038 * 5 4 3 7 7 N 1.34774 * 120.00005 * 186.20324 * 5 4 3 8 8 C 1.47089 * 120.88399 * 186.07662 * 7 5 4 9 9 C 1.53234 * 108.52337 * 231.21201 * 8 7 5 10 10 N 1.46902 * 109.33706 * 306.16799 * 9 8 7 11 11 C 1.46903 * 110.99743 * 187.25321 * 10 9 8 12 12 H 1.08992 * 110.64415 * 296.07127 * 11 10 9 13 13 C 1.55159 * 110.71801 * 59.21528 * 11 10 9 14 14 C 1.54913 * 101.58292 * 153.86640 * 13 11 10 15 15 N 1.47429 * 104.82696 * 322.98628 * 14 13 11 16 16 C 1.36942 * 125.64634 * 204.08953 * 15 14 13 17 17 H 1.08000 * 119.99926 * 168.08664 * 16 15 14 18 18 C 1.38811 * 119.99894 * 348.09348 * 16 15 14 19 19 N 1.31623 * 120.00301 * 324.73781 * 18 16 15 20 20 Si 1.86797 * 119.99925 * 144.74030 * 18 16 15 21 21 H 1.48502 * 109.47467 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47117 * 239.99891 * 20 18 16 23 23 H 1.48501 * 109.47501 * 119.99959 * 20 18 16 24 24 C 1.47017 * 108.70718 * 24.35955 * 15 14 13 25 25 C 1.46900 * 111.27142 * 63.10917 * 10 9 8 26 26 C 1.47082 * 120.88130 * 6.10365 * 7 5 4 27 27 O 1.34640 * 106.10988 * 0.24158 * 4 3 2 28 28 N 1.20888 * 111.46681 * 359.56617 * 27 4 3 29 29 H 1.08998 * 109.46822 * 90.00009 * 1 2 3 30 30 H 1.08994 * 109.46922 * 209.99432 * 1 2 3 31 31 H 1.08990 * 109.47099 * 329.99675 * 1 2 3 32 32 H 1.08001 * 128.08026 * 0.04192 * 3 2 1 33 33 H 1.09001 * 109.62326 * 111.49797 * 8 7 5 34 34 H 1.09002 * 109.62372 * 350.92068 * 8 7 5 35 35 H 1.08993 * 109.49244 * 186.21190 * 9 8 7 36 36 H 1.08999 * 109.49508 * 66.12636 * 9 8 7 37 37 H 1.08996 * 111.00792 * 35.78699 * 13 11 10 38 38 H 1.09000 * 111.00153 * 271.93299 * 13 11 10 39 39 H 1.09000 * 110.36494 * 204.15314 * 14 13 11 40 40 H 1.08994 * 110.36683 * 81.82330 * 14 13 11 41 41 H 0.97003 * 119.99604 * 354.35570 * 19 18 16 42 42 H 1.08993 * 109.88571 * 118.12603 * 24 15 14 43 43 H 1.09003 * 109.88397 * 239.29714 * 24 15 14 44 44 H 1.08998 * 109.49325 * 56.84836 * 25 10 9 45 45 H 1.08995 * 109.49424 * 176.93554 * 25 10 9 46 46 H 1.08997 * 109.62943 * 248.49941 * 26 7 5 47 47 H 1.08995 * 109.62833 * 9.08085 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6010 -0.0006 5 6 4.8871 1.3430 -0.0014 6 8 4.8860 2.5535 0.1124 7 7 6.0530 0.6790 -0.1280 8 6 7.3393 1.3807 0.0012 9 6 8.2045 1.0395 -1.2166 10 7 8.3037 -0.4202 -1.3492 11 6 9.2623 -0.7894 -2.3994 12 1 8.9181 -0.4417 -3.3733 13 6 10.6711 -0.2226 -2.0806 14 6 11.5858 -1.2229 -2.8304 15 7 10.9303 -2.5327 -2.6622 16 6 11.5523 -3.7509 -2.7291 17 1 11.0331 -4.6408 -2.4050 18 6 12.8500 -3.8419 -3.2132 19 7 13.2463 -3.0500 -4.1870 20 14 14.0341 -5.0884 -2.4828 21 1 13.3491 -5.8517 -1.4089 22 1 15.2092 -4.3807 -1.9140 23 1 14.4857 -6.0235 -3.5444 24 6 9.4972 -2.3147 -2.4172 25 6 6.9882 -1.0231 -1.6018 26 6 6.0731 -0.7664 -0.3997 27 8 3.4540 -0.7361 -0.0063 28 7 2.2848 -1.0433 -0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5138 32 1 2.0679 2.1746 0.0006 33 1 7.8437 1.0559 0.9113 34 1 7.1674 2.4564 0.0384 35 1 9.2008 1.4613 -1.0847 36 1 7.7487 1.4561 -2.1148 37 1 10.8667 -0.2422 -1.0085 38 1 10.7858 0.7856 -2.4787 39 1 12.5800 -1.2361 -2.3836 40 1 11.6472 -0.9623 -3.8870 41 1 12.6104 -2.4604 -4.6218 42 1 8.9110 -2.7726 -3.2139 43 1 9.2164 -2.7424 -1.4547 44 1 6.5493 -0.5777 -2.4946 45 1 7.1025 -2.0970 -1.7491 46 1 6.4558 -1.2975 0.4718 47 1 5.0642 -1.1101 -0.6276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046001402.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:50 Heat of formation + Delta-G solvation = 80.003041 kcal Electronic energy + Delta-G solvation = -29165.429603 eV Core-core repulsion = 25160.163724 eV Total energy + Delta-G solvation = -4005.265880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.43249 -40.49067 -38.80744 -36.96865 -35.39669 -34.48468 -32.72309 -32.09176 -31.34976 -29.30377 -29.13481 -28.28171 -26.33205 -24.43487 -24.26160 -23.34292 -23.15852 -21.26032 -20.18292 -20.01563 -19.54287 -18.24337 -17.97690 -17.50770 -16.89883 -16.45251 -15.67776 -15.60012 -14.99274 -14.87354 -14.62471 -14.31293 -14.11613 -13.86068 -13.81259 -13.68373 -13.37367 -13.22710 -13.20099 -13.04170 -12.47497 -12.23006 -11.83293 -11.79320 -11.66348 -11.48491 -11.35279 -10.72757 -10.66446 -10.56261 -10.45425 -10.41451 -10.32882 -10.16433 -10.12584 -10.01496 -9.62878 -9.11933 -8.31048 -8.28739 -6.94535 -6.15393 -3.05765 0.39952 1.62459 2.13093 2.56235 2.71517 3.54742 3.57170 3.61026 3.71772 3.81794 3.86311 4.34992 4.55814 4.62539 4.67629 4.75094 4.86863 4.90635 4.99877 5.02396 5.12541 5.13702 5.20291 5.25667 5.31556 5.36337 5.39119 5.52902 5.57245 5.61210 5.67019 5.68020 5.74115 5.85733 6.04610 6.07804 6.28970 6.32549 6.51764 6.56804 6.84188 6.93889 7.04541 7.07720 7.26072 7.46254 7.73683 7.82437 8.50260 9.01924 9.83614 10.39831 11.19571 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023189 B = 0.002344 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.189638 B =11944.987146 C =12763.242611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.012 3.988 3 C -0.151 4.151 4 C -0.079 4.079 5 C 0.604 3.396 6 O -0.518 6.518 7 N -0.596 5.596 8 C 0.118 3.882 9 C 0.040 3.960 10 N -0.525 5.525 11 C 0.072 3.928 12 H 0.045 0.955 13 C -0.126 4.126 14 C 0.146 3.854 15 N -0.600 5.600 16 C -0.342 4.342 17 H 0.067 0.933 18 C -0.022 4.022 19 N -0.908 5.908 20 Si 1.059 2.941 21 H -0.292 1.292 22 H -0.290 1.290 23 H -0.296 1.296 24 C 0.147 3.853 25 C 0.040 3.960 26 C 0.102 3.898 27 O 0.117 5.883 28 N -0.347 5.347 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.183 0.817 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.037 0.963 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.021 0.979 41 H 0.268 0.732 42 H 0.017 0.983 43 H 0.038 0.962 44 H 0.037 0.963 45 H 0.097 0.903 46 H 0.089 0.911 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.465 10.609 8.922 26.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.146 4.146 3 C -0.173 4.173 4 C -0.145 4.145 5 C 0.389 3.611 6 O -0.394 6.394 7 N -0.329 5.329 8 C -0.004 4.004 9 C -0.088 4.088 10 N -0.250 5.250 11 C -0.036 4.036 12 H 0.062 0.938 13 C -0.164 4.164 14 C 0.019 3.981 15 N -0.328 5.328 16 C -0.469 4.469 17 H 0.085 0.915 18 C -0.225 4.225 19 N -0.548 5.548 20 Si 0.889 3.111 21 H -0.218 1.218 22 H -0.217 1.217 23 H -0.223 1.223 24 C 0.021 3.979 25 C -0.088 4.088 26 C -0.020 4.020 27 O 0.046 5.954 28 N -0.050 5.050 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.201 0.799 33 H 0.103 0.897 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.039 0.961 41 H 0.079 0.921 42 H 0.035 0.965 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.115 0.885 46 H 0.107 0.893 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.908 9.107 9.393 24.664 hybrid contribution -1.988 1.524 -0.899 2.661 sum -22.896 10.631 8.493 26.634 Atomic orbital electron populations 1.20221 0.85187 1.04200 1.03796 1.23666 0.99431 0.88229 1.03306 1.22872 0.89907 1.01772 1.02792 1.24211 0.97257 0.84035 1.08996 1.16640 0.80944 0.85907 0.77595 1.90860 1.85654 1.12014 1.50904 1.48124 1.05613 1.10264 1.68887 1.21897 0.81293 0.98098 0.99063 1.22479 1.00623 0.88950 0.96781 1.62006 1.07767 1.08640 1.46630 1.22680 0.91996 0.97749 0.91146 0.93751 1.22886 0.94009 0.97982 1.01560 1.21476 0.95566 0.84611 0.96399 1.44534 1.01553 1.01798 1.84895 1.19693 0.99593 0.84902 1.42683 0.91538 1.25638 0.97386 1.03207 0.96241 1.70741 1.39859 1.26415 1.17736 0.83652 0.76120 0.75443 0.75894 1.21775 1.21663 1.22347 1.21250 0.87518 0.90947 0.98201 1.22473 0.89079 1.01579 0.95700 1.22320 1.01114 0.79174 0.99440 1.85115 1.21024 1.22118 1.67105 1.73747 0.89672 1.24557 1.17058 0.89794 0.90158 0.89663 0.79936 0.89749 0.88369 0.88697 0.94482 0.90534 0.92247 0.92837 0.96094 0.92146 0.96515 0.94367 0.94505 0.88473 0.89327 0.88282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.47 36.01 0.38 -0.01 16 2 C 0.01 0.10 7.31 -82.17 -0.60 -0.50 16 3 C -0.15 -1.33 10.92 -38.95 -0.43 -1.76 16 4 C -0.08 -0.83 6.92 -36.32 -0.25 -1.08 16 5 C 0.60 7.04 7.69 -12.48 -0.10 6.95 16 6 O -0.52 -7.18 16.38 5.29 0.09 -7.09 16 7 N -0.60 -6.49 3.01 -173.69 -0.52 -7.01 16 8 C 0.12 1.23 6.61 -3.60 -0.02 1.20 16 9 C 0.04 0.46 5.46 -3.70 -0.02 0.44 16 10 N -0.53 -7.10 4.45 -224.14 -1.00 -8.10 16 11 C 0.07 1.20 2.64 -65.87 -0.17 1.03 16 12 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 13 C -0.13 -2.18 5.31 -24.58 -0.13 -2.31 16 14 C 0.15 3.34 5.37 -2.53 -0.01 3.33 16 15 N -0.60 -15.20 3.33 -170.06 -0.57 -15.76 16 16 C -0.34 -9.69 9.95 -15.06 -0.15 -9.84 16 17 H 0.07 1.90 8.03 -52.49 -0.42 1.47 16 18 C -0.02 -0.65 4.93 -17.43 -0.09 -0.73 16 19 N -0.91 -27.38 12.89 55.49 0.72 -26.67 16 20 Si 1.06 25.49 30.04 -169.99 -5.11 20.39 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.30 -7.06 7.11 56.52 0.40 -6.66 16 24 C 0.15 3.02 5.74 -3.06 -0.02 3.00 16 25 C 0.04 0.48 5.47 -3.70 -0.02 0.46 16 26 C 0.10 1.04 6.29 -3.60 -0.02 1.02 16 27 O 0.12 1.23 7.92 15.56 0.12 1.36 16 28 N -0.35 -3.73 12.04 33.52 0.40 -3.33 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 1.00 7.04 -51.93 -0.37 0.64 16 35 H 0.09 1.04 6.75 -51.93 -0.35 0.69 16 36 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.06 0.89 7.93 -51.93 -0.41 0.48 16 39 H 0.05 1.35 7.85 -51.93 -0.41 0.94 16 40 H 0.02 0.52 7.07 -51.93 -0.37 0.15 16 41 H 0.27 8.13 6.57 -40.82 -0.27 7.86 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.04 0.79 7.78 -51.93 -0.40 0.39 16 44 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.10 1.19 6.88 -51.93 -0.36 0.84 16 46 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.10 0.95 4.35 -52.37 -0.23 0.72 16 LS Contribution 372.18 15.07 5.61 5.61 Total: -1.00 -33.16 372.18 -8.94 -42.10 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -7.03 Total: -2.70 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -1.65 Total: 1.21 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.97 Total: -60.86 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: 0.21 Total: -5.74 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.11 Total: 20.39 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.16 -8.94 -42.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046001402.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.103 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds