Wall clock time and date at job start Tue Mar 31 2020 19:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41254 * 126.70486 * 2 1 4 4 C 1.36826 * 103.84898 * 180.02562 * 3 2 1 5 5 C 1.47509 * 126.94625 * 179.97438 * 4 3 2 6 6 O 1.21588 * 120.00020 * 6.21038 * 5 4 3 7 7 N 1.34774 * 120.00005 * 186.20324 * 5 4 3 8 8 C 1.47089 * 120.88399 * 186.07662 * 7 5 4 9 9 C 1.53234 * 108.52337 * 231.21201 * 8 7 5 10 10 N 1.46902 * 109.33706 * 306.16799 * 9 8 7 11 11 C 1.46903 * 110.99743 * 187.25321 * 10 9 8 12 12 H 1.08992 * 110.64415 * 296.07127 * 11 10 9 13 13 C 1.55159 * 110.71801 * 59.21528 * 11 10 9 14 14 C 1.54913 * 101.58292 * 153.86640 * 13 11 10 15 15 N 1.47429 * 104.82696 * 322.98628 * 14 13 11 16 16 C 1.36942 * 125.64634 * 204.08953 * 15 14 13 17 17 H 1.08000 * 119.99926 * 168.08664 * 16 15 14 18 18 C 1.38811 * 119.99894 * 348.09348 * 16 15 14 19 19 N 1.31623 * 120.00301 * 324.73781 * 18 16 15 20 20 Si 1.86797 * 119.99925 * 144.74030 * 18 16 15 21 21 H 1.48502 * 109.47467 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47117 * 239.99891 * 20 18 16 23 23 H 1.48501 * 109.47501 * 119.99959 * 20 18 16 24 24 C 1.47017 * 108.70718 * 24.35955 * 15 14 13 25 25 C 1.46900 * 111.27142 * 63.10917 * 10 9 8 26 26 C 1.47082 * 120.88130 * 6.10365 * 7 5 4 27 27 O 1.34640 * 106.10988 * 0.24158 * 4 3 2 28 28 N 1.20888 * 111.46681 * 359.56617 * 27 4 3 29 29 H 1.08998 * 109.46822 * 90.00009 * 1 2 3 30 30 H 1.08994 * 109.46922 * 209.99432 * 1 2 3 31 31 H 1.08990 * 109.47099 * 329.99675 * 1 2 3 32 32 H 1.08001 * 128.08026 * 0.04192 * 3 2 1 33 33 H 1.09001 * 109.62326 * 111.49797 * 8 7 5 34 34 H 1.09002 * 109.62372 * 350.92068 * 8 7 5 35 35 H 1.08993 * 109.49244 * 186.21190 * 9 8 7 36 36 H 1.08999 * 109.49508 * 66.12636 * 9 8 7 37 37 H 1.08996 * 111.00792 * 35.78699 * 13 11 10 38 38 H 1.09000 * 111.00153 * 271.93299 * 13 11 10 39 39 H 1.09000 * 110.36494 * 204.15314 * 14 13 11 40 40 H 1.08994 * 110.36683 * 81.82330 * 14 13 11 41 41 H 0.97003 * 119.99604 * 354.35570 * 19 18 16 42 42 H 1.08993 * 109.88571 * 118.12603 * 24 15 14 43 43 H 1.09003 * 109.88397 * 239.29714 * 24 15 14 44 44 H 1.08998 * 109.49325 * 56.84836 * 25 10 9 45 45 H 1.08995 * 109.49424 * 176.93554 * 25 10 9 46 46 H 1.08997 * 109.62943 * 248.49941 * 26 7 5 47 47 H 1.08995 * 109.62833 * 9.08085 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6010 -0.0006 5 6 4.8871 1.3430 -0.0014 6 8 4.8860 2.5535 0.1124 7 7 6.0530 0.6790 -0.1280 8 6 7.3393 1.3807 0.0012 9 6 8.2045 1.0395 -1.2166 10 7 8.3037 -0.4202 -1.3492 11 6 9.2623 -0.7894 -2.3994 12 1 8.9181 -0.4417 -3.3733 13 6 10.6711 -0.2226 -2.0806 14 6 11.5858 -1.2229 -2.8304 15 7 10.9303 -2.5327 -2.6622 16 6 11.5523 -3.7509 -2.7291 17 1 11.0331 -4.6408 -2.4050 18 6 12.8500 -3.8419 -3.2132 19 7 13.2463 -3.0500 -4.1870 20 14 14.0341 -5.0884 -2.4828 21 1 13.3491 -5.8517 -1.4089 22 1 15.2092 -4.3807 -1.9140 23 1 14.4857 -6.0235 -3.5444 24 6 9.4972 -2.3147 -2.4172 25 6 6.9882 -1.0231 -1.6018 26 6 6.0731 -0.7664 -0.3997 27 8 3.4540 -0.7361 -0.0063 28 7 2.2848 -1.0433 -0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8899 0.5138 32 1 2.0679 2.1746 0.0006 33 1 7.8437 1.0559 0.9113 34 1 7.1674 2.4564 0.0384 35 1 9.2008 1.4613 -1.0847 36 1 7.7487 1.4561 -2.1148 37 1 10.8667 -0.2422 -1.0085 38 1 10.7858 0.7856 -2.4787 39 1 12.5800 -1.2361 -2.3836 40 1 11.6472 -0.9623 -3.8870 41 1 12.6104 -2.4604 -4.6218 42 1 8.9110 -2.7726 -3.2139 43 1 9.2164 -2.7424 -1.4547 44 1 6.5493 -0.5777 -2.4946 45 1 7.1025 -2.0970 -1.7491 46 1 6.4558 -1.2975 0.4718 47 1 5.0642 -1.1101 -0.6276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046001402.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:49 Heat of formation + Delta-G solvation = 57.857822 kcal Electronic energy + Delta-G solvation = -29166.389892 eV Core-core repulsion = 25160.163724 eV Total energy + Delta-G solvation = -4006.226169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.14887 -41.43439 -40.06731 -38.32307 -36.20186 -35.66350 -34.07757 -33.35020 -32.26593 -30.97327 -29.68871 -29.65224 -27.68232 -25.99456 -25.35870 -24.39202 -23.96404 -22.18283 -21.92080 -21.29112 -20.52082 -19.54370 -18.98962 -18.81689 -17.85766 -17.24464 -16.98179 -16.65445 -16.31896 -16.00980 -15.75963 -15.44075 -15.40548 -14.99986 -14.98703 -14.76330 -14.40365 -14.29728 -14.22660 -13.82635 -13.69717 -13.44504 -13.27291 -12.72570 -12.68579 -12.60654 -12.46153 -12.41791 -12.32940 -11.97209 -11.87412 -11.81512 -11.70567 -11.63824 -11.47493 -11.15331 -10.89339 -10.44928 -10.03440 -9.38361 -9.03104 -8.40510 -5.26567 -0.37585 0.96060 1.33372 1.58766 1.65549 1.72010 1.83782 1.90238 2.59398 2.75071 3.03435 3.11077 3.11976 3.55027 3.59364 3.66458 3.77886 3.87893 3.93139 3.97058 4.14114 4.17501 4.23535 4.28513 4.31353 4.42993 4.50682 4.58934 4.67194 4.69997 4.72431 4.77879 4.79119 4.83675 4.88178 4.90837 4.96595 5.03380 5.09665 5.17464 5.21505 5.32290 5.68651 5.88262 5.99052 6.06707 6.29587 6.60649 6.88210 7.00185 7.71216 8.30003 8.94174 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023189 B = 0.002344 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.189638 B =11944.987146 C =12763.242611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.016 3.984 3 C -0.143 4.143 4 C -0.096 4.096 5 C 0.606 3.394 6 O -0.543 6.543 7 N -0.597 5.597 8 C 0.122 3.878 9 C 0.043 3.957 10 N -0.527 5.527 11 C 0.091 3.909 12 H 0.046 0.954 13 C -0.106 4.106 14 C 0.146 3.854 15 N -0.624 5.624 16 C -0.352 4.352 17 H 0.059 0.941 18 C -0.075 4.075 19 N -0.934 5.934 20 Si 1.112 2.888 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.291 1.291 24 C 0.146 3.854 25 C 0.041 3.959 26 C 0.111 3.889 27 O 0.107 5.893 28 N -0.371 5.371 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.203 0.797 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.036 0.964 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.023 0.977 40 H 0.001 0.999 41 H 0.253 0.747 42 H 0.009 0.991 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.148 11.469 10.249 28.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.142 4.142 3 C -0.165 4.165 4 C -0.161 4.161 5 C 0.393 3.607 6 O -0.422 6.422 7 N -0.328 5.328 8 C 0.000 4.000 9 C -0.085 4.085 10 N -0.252 5.252 11 C -0.018 4.018 12 H 0.064 0.936 13 C -0.144 4.144 14 C 0.020 3.980 15 N -0.351 5.351 16 C -0.480 4.480 17 H 0.077 0.923 18 C -0.271 4.271 19 N -0.575 5.575 20 Si 0.937 3.063 21 H -0.199 1.199 22 H -0.213 1.213 23 H -0.218 1.218 24 C 0.020 3.980 25 C -0.087 4.087 26 C -0.011 4.011 27 O 0.039 5.961 28 N -0.077 5.077 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.126 0.874 32 H 0.220 0.780 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.041 0.959 40 H 0.019 0.981 41 H 0.063 0.937 42 H 0.027 0.973 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.109 0.891 46 H 0.113 0.887 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -22.611 9.970 10.734 26.942 hybrid contribution -1.594 1.256 -1.324 2.424 sum -24.205 11.226 9.410 28.293 Atomic orbital electron populations 1.20421 0.82664 1.05441 1.04960 1.24257 1.00945 0.87492 1.01545 1.23221 0.89296 1.02767 1.01240 1.24150 0.97335 0.84306 1.10359 1.16724 0.81347 0.85636 0.77014 1.90842 1.86091 1.12996 1.52237 1.48187 1.05742 1.10429 1.68467 1.21910 0.80885 0.98363 0.98834 1.22533 1.01496 0.87240 0.97253 1.61955 1.07994 1.10260 1.45039 1.22353 0.92560 0.94575 0.92276 0.93630 1.22740 0.92689 0.97861 1.01153 1.21432 0.95405 0.85371 0.95774 1.44830 1.03861 1.01774 1.84667 1.19926 1.00181 0.86103 1.41759 0.92345 1.27015 0.99229 1.04838 0.96061 1.70867 1.39487 1.27841 1.19352 0.82933 0.74254 0.73569 0.75563 1.19889 1.21272 1.21834 1.21340 0.84914 0.94107 0.97599 1.22492 0.88552 1.01126 0.96577 1.22261 1.01102 0.78964 0.98814 1.85078 1.21193 1.22091 1.67756 1.73742 0.89971 1.25624 1.18385 0.88541 0.89944 0.87418 0.78036 0.88843 0.87938 0.87706 0.94590 0.89951 0.89064 0.95887 0.98075 0.93704 0.97332 0.94281 0.94504 0.89075 0.88742 0.87541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.47 71.24 0.75 0.17 16 2 C 0.02 0.24 7.31 43.55 0.32 0.56 16 3 C -0.14 -2.25 10.92 22.68 0.25 -2.00 16 4 C -0.10 -1.88 6.92 24.39 0.17 -1.71 16 5 C 0.61 13.32 7.69 86.69 0.67 13.98 16 6 O -0.54 -14.33 16.38 -3.99 -0.07 -14.40 16 7 N -0.60 -11.99 3.01 -821.71 -2.47 -14.46 16 8 C 0.12 2.26 6.61 86.35 0.57 2.83 16 9 C 0.04 0.88 5.46 86.38 0.47 1.35 16 10 N -0.53 -13.29 4.45 -863.06 -3.84 -17.13 16 11 C 0.09 2.91 2.64 46.11 0.12 3.03 16 12 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 13 C -0.11 -3.53 5.31 31.99 0.17 -3.36 16 14 C 0.15 6.84 5.37 86.86 0.47 7.30 16 15 N -0.62 -32.18 3.33 -691.96 -2.30 -34.48 16 16 C -0.35 -20.33 9.95 84.03 0.84 -19.49 16 17 H 0.06 3.39 8.03 -2.91 -0.02 3.37 16 18 C -0.07 -4.35 4.93 84.86 0.42 -3.93 16 19 N -0.93 -57.87 12.89 21.65 0.28 -57.59 16 20 Si 1.11 51.91 30.04 68.60 2.06 53.97 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 22 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 24 C 0.15 6.00 5.74 86.74 0.50 6.50 16 25 C 0.04 0.93 5.47 86.38 0.47 1.40 16 26 C 0.11 2.11 6.29 86.35 0.54 2.65 16 27 O 0.11 2.15 7.92 65.84 0.52 2.68 16 28 N -0.37 -7.55 12.04 -48.86 -0.59 -8.14 16 29 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.10 1.88 7.04 -2.39 -0.02 1.86 16 35 H 0.10 1.97 6.75 -2.39 -0.02 1.95 16 36 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 38 H 0.09 2.49 7.93 -2.39 -0.02 2.48 16 39 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16 40 H 0.00 0.08 7.07 -2.39 -0.02 0.06 16 41 H 0.25 16.00 6.57 -92.71 -0.61 15.39 16 42 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.04 1.61 7.78 -2.39 -0.02 1.59 16 44 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.09 2.17 6.88 -2.39 -0.02 2.16 16 46 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.11 1.92 4.35 -9.26 -0.04 1.88 16 Total: -1.00 -73.01 372.18 1.41 -71.60 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 1.11 Total: 8.67 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 6.72 Total: 9.28 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -8.93 Total: -131.80 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.46 Total: -11.72 kcal Atomic # 14 Polarization: 51.91 SS G_CDS: 2.06 Total: 53.97 kcal Total: -73.01 1.41 -71.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046001402.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.458 kcal (2) G-P(sol) polarization free energy of solvation -73.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds