Wall clock time and date at job start Tue Mar 31 2020 19:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30007 * 127.33629 * 2 1 4 4 O 1.20658 * 112.30671 * 180.02562 * 3 2 1 5 5 C 1.33497 * 113.15273 * 359.71823 * 4 3 2 6 6 C 1.37362 * 106.33892 * 0.45161 * 5 4 3 7 7 C 1.47399 * 128.56474 * 179.85407 * 6 5 4 8 8 O 1.21601 * 120.00245 * 211.64328 * 7 6 5 9 9 N 1.34782 * 119.99850 * 31.64341 * 7 6 5 10 10 C 1.47083 * 120.88167 * 174.69577 * 9 7 6 11 11 C 1.53238 * 108.51922 * 231.20840 * 10 9 7 12 12 N 1.46900 * 109.33853 * 306.16832 * 11 10 9 13 13 C 1.46906 * 111.00079 * 187.25404 * 12 11 10 14 14 H 1.08992 * 110.88654 * 303.88215 * 13 12 11 15 15 C 1.55152 * 111.00567 * 179.97438 * 13 12 11 16 16 C 1.54316 * 102.94658 * 206.42530 * 15 13 12 17 17 N 1.47023 * 107.27125 * 22.19668 * 16 15 13 18 18 C 1.36939 * 125.65341 * 181.02583 * 17 16 15 19 19 H 1.08003 * 120.00255 * 140.56150 * 18 17 16 20 20 C 1.38814 * 119.99649 * 320.56441 * 18 17 16 21 21 N 1.31616 * 120.00002 * 153.78138 * 20 18 17 22 22 Si 1.86797 * 119.99938 * 333.77816 * 20 18 17 23 23 H 1.48503 * 109.47304 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47357 * 240.00503 * 22 20 18 25 25 H 1.48500 * 109.46974 * 120.00316 * 22 20 18 26 26 C 1.47433 * 108.70182 * 1.28629 * 17 16 15 27 27 C 1.46897 * 111.27167 * 63.10680 * 12 11 10 28 28 C 1.47083 * 120.88003 * 354.71925 * 9 7 6 29 29 H 1.08996 * 109.47081 * 269.95169 * 1 2 3 30 30 H 1.09002 * 109.47209 * 29.95756 * 1 2 3 31 31 H 1.09005 * 109.46974 * 149.95308 * 1 2 3 32 32 H 1.08000 * 126.83196 * 180.30838 * 5 4 3 33 33 H 1.09001 * 109.62812 * 111.49588 * 10 9 7 34 34 H 1.09000 * 109.62781 * 350.91476 * 10 9 7 35 35 H 1.08998 * 109.49185 * 186.21322 * 11 10 9 36 36 H 1.08996 * 109.49921 * 66.12638 * 11 10 9 37 37 H 1.09002 * 110.71971 * 88.06257 * 15 13 12 38 38 H 1.08998 * 110.87692 * 324.86167 * 15 13 12 39 39 H 1.08998 * 109.88549 * 262.77852 * 16 15 13 40 40 H 1.08996 * 110.01618 * 141.68442 * 16 15 13 41 41 H 0.97003 * 119.99773 * 2.21597 * 21 20 18 42 42 H 1.08993 * 110.36522 * 94.48199 * 26 17 16 43 43 H 1.09001 * 110.36794 * 216.80660 * 26 17 16 44 44 H 1.09000 * 109.49635 * 56.85418 * 27 12 11 45 45 H 1.08996 * 109.49632 * 176.93661 * 27 12 11 46 46 H 1.09012 * 109.62451 * 248.50164 * 28 9 7 47 47 H 1.08996 * 109.62840 * 8.88692 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6008 0.0051 6 6 2.3991 -1.1696 -0.0007 7 6 2.0400 -2.5992 -0.0010 8 8 1.0252 -2.9711 -0.5583 9 7 2.8365 -3.4942 0.6164 10 6 2.4403 -4.9063 0.7285 11 6 2.5691 -5.3330 2.1946 12 7 3.9242 -5.0282 2.6727 13 6 4.1437 -5.5765 4.0178 14 1 3.3913 -5.2082 4.7151 15 6 5.5752 -5.2552 4.5226 16 6 5.8556 -6.4000 5.5187 17 7 4.9627 -7.5136 5.1665 18 6 4.8857 -8.7133 5.8224 19 1 3.9258 -9.1832 5.9778 20 6 6.0416 -9.3252 6.2877 21 7 5.9838 -10.1465 7.3145 22 14 7.6790 -8.9830 5.4564 23 1 7.4755 -8.0311 4.3348 24 1 8.2430 -10.2528 4.9322 25 1 8.6204 -8.3926 6.4415 26 6 4.1682 -7.1274 3.9861 27 6 4.1871 -3.5832 2.6440 28 6 4.1246 -3.0847 1.1963 29 1 -0.3633 -0.0009 1.0276 30 1 -0.3634 0.8904 -0.5132 31 1 -0.3633 -0.8896 -0.5146 32 1 4.5966 -1.1196 0.0105 33 1 3.0944 -5.5203 0.1095 34 1 1.4068 -5.0236 0.4024 35 1 2.3860 -6.4041 2.2790 36 1 1.8404 -4.7904 2.7968 37 1 5.5982 -4.2899 5.0282 38 1 6.2906 -5.2755 3.7006 39 1 5.6482 -6.0660 6.5353 40 1 6.8948 -6.7185 5.4381 41 1 5.1290 -10.3492 7.7258 42 1 4.6468 -7.4830 3.0738 43 1 3.1559 -7.5240 4.0638 44 1 3.4359 -3.0649 3.2398 45 1 5.1773 -3.3854 3.0543 46 1 4.9407 -3.5238 0.6223 47 1 4.2061 -1.9980 1.1764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046058971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:54 Heat of formation + Delta-G solvation = 82.446601 kcal Electronic energy + Delta-G solvation = -29358.311481 eV Core-core repulsion = 25353.151562 eV Total energy + Delta-G solvation = -4005.159919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.35423 -40.52078 -38.77634 -36.94434 -34.94571 -34.58720 -32.95415 -32.23839 -31.26642 -29.63471 -29.17585 -28.40091 -26.61326 -24.97379 -23.97411 -23.41591 -21.79259 -21.65274 -20.26681 -20.06935 -19.65471 -18.19357 -17.90349 -17.55799 -17.28182 -16.56986 -15.78257 -15.70171 -15.20116 -15.06189 -14.86178 -14.45375 -14.10858 -13.95402 -13.72877 -13.57213 -13.26664 -13.19665 -13.04892 -12.78032 -12.55632 -12.35799 -12.23890 -11.87120 -11.65340 -11.54068 -11.36200 -11.16091 -10.87828 -10.53914 -10.47593 -10.38908 -10.33645 -10.31876 -10.04045 -9.55468 -9.28703 -9.10197 -8.40769 -8.34401 -6.98867 -6.25056 -3.47780 0.64537 1.38611 2.25124 2.62780 2.77009 3.44700 3.51359 3.59005 3.68859 3.74041 3.84262 4.14959 4.42481 4.51161 4.57600 4.63782 4.77600 4.87746 4.91106 5.02291 5.10937 5.11910 5.15126 5.19560 5.26190 5.30993 5.37204 5.38609 5.49711 5.54264 5.58018 5.67992 5.72739 5.78613 5.89354 6.08006 6.16631 6.20056 6.49116 6.59341 6.66713 6.82249 6.93557 7.00223 7.19109 7.69661 7.77855 8.02951 8.38964 8.97724 9.53324 10.34010 11.02265 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026220 B = 0.002467 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.624870 B =11345.681524 C =11820.048174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.067 3.933 3 N -0.357 5.357 4 O 0.099 5.901 5 C -0.018 4.018 6 C -0.248 4.248 7 C 0.596 3.404 8 O -0.529 6.529 9 N -0.603 5.603 10 C 0.121 3.879 11 C 0.041 3.959 12 N -0.526 5.526 13 C 0.068 3.932 14 H 0.049 0.951 15 C -0.122 4.122 16 C 0.126 3.874 17 N -0.603 5.603 18 C -0.339 4.339 19 H 0.059 0.941 20 C 0.001 3.999 21 N -0.907 5.907 22 Si 1.055 2.945 23 H -0.275 1.275 24 H -0.297 1.297 25 H -0.293 1.293 26 C 0.139 3.861 27 C 0.039 3.961 28 C 0.091 3.909 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.235 0.765 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.037 0.963 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.031 0.969 40 H 0.030 0.970 41 H 0.266 0.734 42 H 0.033 0.967 43 H 0.037 0.963 44 H 0.036 0.964 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.963 20.691 -15.396 26.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 N -0.064 5.064 4 O 0.038 5.962 5 C -0.099 4.099 6 C -0.255 4.255 7 C 0.384 3.616 8 O -0.407 6.407 9 N -0.336 5.336 10 C -0.001 4.001 11 C -0.088 4.088 12 N -0.251 5.251 13 C -0.040 4.040 14 H 0.067 0.933 15 C -0.160 4.160 16 C 0.001 3.999 17 N -0.331 5.331 18 C -0.467 4.467 19 H 0.076 0.924 20 C -0.204 4.204 21 N -0.544 5.544 22 Si 0.885 3.115 23 H -0.201 1.201 24 H -0.225 1.225 25 H -0.220 1.220 26 C 0.013 3.987 27 C -0.089 4.089 28 C -0.032 4.032 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.250 0.750 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.112 0.888 46 H 0.105 0.895 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.777 21.135 -15.883 26.706 hybrid contribution -2.033 -0.212 0.640 2.142 sum -5.809 20.922 -15.243 26.530 Atomic orbital electron populations 1.20305 0.84897 1.04799 1.03885 1.24845 0.98948 0.86156 0.99570 1.73679 0.89274 1.23538 1.19908 1.84600 1.21514 1.23057 1.66985 1.26829 1.00391 0.83925 0.98792 1.22321 0.93082 0.95638 1.14447 1.16875 0.83059 0.83087 0.78595 1.90795 1.25986 1.79721 1.44159 1.48011 1.20209 1.09391 1.56000 1.21817 1.02293 0.79338 0.96658 1.22497 0.89418 1.02353 0.94511 1.61966 1.25794 1.11781 1.25542 1.22918 0.96804 0.97603 0.86714 0.93282 1.22631 0.95892 0.98217 0.99308 1.21614 0.94967 0.87556 0.95775 1.44534 1.46063 1.12920 1.29539 1.19745 0.94075 0.97450 1.35432 0.92353 1.26431 1.02646 0.94860 0.96419 1.70908 1.28001 1.37868 1.17581 0.83885 0.75401 0.75526 0.76662 1.20103 1.22471 1.21987 1.21692 0.95763 0.89442 0.91791 1.22454 1.02353 0.88954 0.95186 1.22459 0.85430 1.00491 0.94809 0.89814 0.90068 0.88538 0.74959 0.90047 0.88530 0.88625 0.94523 0.92057 0.90699 0.95052 0.95281 0.92380 0.94879 0.94514 0.94536 0.88797 0.89507 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.45 36.00 0.38 -0.29 16 2 C 0.07 0.67 7.59 -79.77 -0.61 0.07 16 3 N -0.36 -3.67 12.01 34.78 0.42 -3.25 16 4 O 0.10 0.82 11.06 18.64 0.21 1.03 16 5 C -0.02 -0.11 10.11 30.41 0.31 0.19 16 6 C -0.25 -2.33 5.99 -102.89 -0.62 -2.94 16 7 C 0.60 6.62 7.68 -12.53 -0.10 6.52 16 8 O -0.53 -7.45 15.64 5.28 0.08 -7.37 16 9 N -0.60 -5.83 3.01 -173.73 -0.52 -6.35 16 10 C 0.12 1.23 6.58 -3.60 -0.02 1.21 16 11 C 0.04 0.47 5.52 -3.70 -0.02 0.45 16 12 N -0.53 -6.44 4.52 -223.64 -1.01 -7.45 16 13 C 0.07 1.05 2.73 -65.44 -0.18 0.87 16 14 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 15 C -0.12 -1.90 5.03 -24.90 -0.13 -2.03 16 16 C 0.13 2.64 6.21 -3.07 -0.02 2.62 16 17 N -0.60 -14.50 2.82 -169.93 -0.48 -14.98 16 18 C -0.34 -9.59 10.24 -15.06 -0.15 -9.74 16 19 H 0.06 1.77 8.06 -52.48 -0.42 1.35 16 20 C 0.00 0.02 5.38 -17.43 -0.09 -0.07 16 21 N -0.91 -27.81 13.71 55.49 0.76 -27.05 16 22 Si 1.06 25.92 26.27 -169.99 -4.47 21.46 16 23 H -0.28 -6.34 6.21 56.52 0.35 -5.99 16 24 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.14 2.73 5.95 -2.40 -0.01 2.71 16 27 C 0.04 0.37 5.43 -3.70 -0.02 0.35 16 28 C 0.09 0.66 5.89 -3.60 -0.02 0.64 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.10 0.86 7.23 -51.93 -0.38 0.49 16 32 H 0.23 0.53 6.20 -52.49 -0.33 0.20 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.10 1.03 7.10 -51.93 -0.37 0.66 16 35 H 0.10 1.13 7.05 -51.93 -0.37 0.77 16 36 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.80 7.96 -51.93 -0.41 0.39 16 38 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.03 0.64 4.17 -51.93 -0.22 0.43 16 41 H 0.27 8.08 8.73 -40.82 -0.36 7.72 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.04 0.73 7.87 -51.93 -0.41 0.32 16 44 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.81 6.64 -51.93 -0.34 0.46 16 46 H 0.09 0.56 8.14 -51.92 -0.42 0.13 16 47 H 0.09 0.46 3.47 -51.93 -0.18 0.28 16 LS Contribution 366.09 15.07 5.52 5.52 Total: -1.00 -34.32 366.09 -7.65 -41.97 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -6.85 Total: -4.08 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.31 Total: 0.56 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -0.84 Total: -59.09 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: 0.29 Total: -6.34 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -4.47 Total: 21.46 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.32 -7.65 -41.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046058971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.417 kcal (2) G-P(sol) polarization free energy of solvation -34.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds