Wall clock time and date at job start Tue Mar 31 2020 19:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30007 * 127.33629 * 2 1 4 4 O 1.20658 * 112.30671 * 180.02562 * 3 2 1 5 5 C 1.33497 * 113.15273 * 359.71823 * 4 3 2 6 6 C 1.37362 * 106.33892 * 0.45161 * 5 4 3 7 7 C 1.47399 * 128.56474 * 179.85407 * 6 5 4 8 8 O 1.21601 * 120.00245 * 211.64328 * 7 6 5 9 9 N 1.34782 * 119.99850 * 31.64341 * 7 6 5 10 10 C 1.47083 * 120.88167 * 174.69577 * 9 7 6 11 11 C 1.53238 * 108.51922 * 231.20840 * 10 9 7 12 12 N 1.46900 * 109.33853 * 306.16832 * 11 10 9 13 13 C 1.46906 * 111.00079 * 187.25404 * 12 11 10 14 14 H 1.08992 * 110.88654 * 303.88215 * 13 12 11 15 15 C 1.55152 * 111.00567 * 179.97438 * 13 12 11 16 16 C 1.54316 * 102.94658 * 206.42530 * 15 13 12 17 17 N 1.47023 * 107.27125 * 22.19668 * 16 15 13 18 18 C 1.36939 * 125.65341 * 181.02583 * 17 16 15 19 19 H 1.08003 * 120.00255 * 140.56150 * 18 17 16 20 20 C 1.38814 * 119.99649 * 320.56441 * 18 17 16 21 21 N 1.31616 * 120.00002 * 153.78138 * 20 18 17 22 22 Si 1.86797 * 119.99938 * 333.77816 * 20 18 17 23 23 H 1.48503 * 109.47304 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47357 * 240.00503 * 22 20 18 25 25 H 1.48500 * 109.46974 * 120.00316 * 22 20 18 26 26 C 1.47433 * 108.70182 * 1.28629 * 17 16 15 27 27 C 1.46897 * 111.27167 * 63.10680 * 12 11 10 28 28 C 1.47083 * 120.88003 * 354.71925 * 9 7 6 29 29 H 1.08996 * 109.47081 * 269.95169 * 1 2 3 30 30 H 1.09002 * 109.47209 * 29.95756 * 1 2 3 31 31 H 1.09005 * 109.46974 * 149.95308 * 1 2 3 32 32 H 1.08000 * 126.83196 * 180.30838 * 5 4 3 33 33 H 1.09001 * 109.62812 * 111.49588 * 10 9 7 34 34 H 1.09000 * 109.62781 * 350.91476 * 10 9 7 35 35 H 1.08998 * 109.49185 * 186.21322 * 11 10 9 36 36 H 1.08996 * 109.49921 * 66.12638 * 11 10 9 37 37 H 1.09002 * 110.71971 * 88.06257 * 15 13 12 38 38 H 1.08998 * 110.87692 * 324.86167 * 15 13 12 39 39 H 1.08998 * 109.88549 * 262.77852 * 16 15 13 40 40 H 1.08996 * 110.01618 * 141.68442 * 16 15 13 41 41 H 0.97003 * 119.99773 * 2.21597 * 21 20 18 42 42 H 1.08993 * 110.36522 * 94.48199 * 26 17 16 43 43 H 1.09001 * 110.36794 * 216.80660 * 26 17 16 44 44 H 1.09000 * 109.49635 * 56.85418 * 27 12 11 45 45 H 1.08996 * 109.49632 * 176.93661 * 27 12 11 46 46 H 1.09012 * 109.62451 * 248.50164 * 28 9 7 47 47 H 1.08996 * 109.62840 * 8.88692 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0005 5 6 3.6494 -0.6008 0.0051 6 6 2.3991 -1.1696 -0.0007 7 6 2.0400 -2.5992 -0.0010 8 8 1.0252 -2.9711 -0.5583 9 7 2.8365 -3.4942 0.6164 10 6 2.4403 -4.9063 0.7285 11 6 2.5691 -5.3330 2.1946 12 7 3.9242 -5.0282 2.6727 13 6 4.1437 -5.5765 4.0178 14 1 3.3913 -5.2082 4.7151 15 6 5.5752 -5.2552 4.5226 16 6 5.8556 -6.4000 5.5187 17 7 4.9627 -7.5136 5.1665 18 6 4.8857 -8.7133 5.8224 19 1 3.9258 -9.1832 5.9778 20 6 6.0416 -9.3252 6.2877 21 7 5.9838 -10.1465 7.3145 22 14 7.6790 -8.9830 5.4564 23 1 7.4755 -8.0311 4.3348 24 1 8.2430 -10.2528 4.9322 25 1 8.6204 -8.3926 6.4415 26 6 4.1682 -7.1274 3.9861 27 6 4.1871 -3.5832 2.6440 28 6 4.1246 -3.0847 1.1963 29 1 -0.3633 -0.0009 1.0276 30 1 -0.3634 0.8904 -0.5132 31 1 -0.3633 -0.8896 -0.5146 32 1 4.5966 -1.1196 0.0105 33 1 3.0944 -5.5203 0.1095 34 1 1.4068 -5.0236 0.4024 35 1 2.3860 -6.4041 2.2790 36 1 1.8404 -4.7904 2.7968 37 1 5.5982 -4.2899 5.0282 38 1 6.2906 -5.2755 3.7006 39 1 5.6482 -6.0660 6.5353 40 1 6.8948 -6.7185 5.4381 41 1 5.1290 -10.3492 7.7258 42 1 4.6468 -7.4830 3.0738 43 1 3.1559 -7.5240 4.0638 44 1 3.4359 -3.0649 3.2398 45 1 5.1773 -3.3854 3.0543 46 1 4.9407 -3.5238 0.6223 47 1 4.2061 -1.9980 1.1764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046058971.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:53 Heat of formation + Delta-G solvation = 57.725846 kcal Electronic energy + Delta-G solvation = -29359.383453 eV Core-core repulsion = 25353.151562 eV Total energy + Delta-G solvation = -4006.231891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.01913 -41.35665 -39.94034 -38.18298 -35.80904 -35.56809 -34.37325 -33.49442 -32.04784 -31.17829 -29.99283 -29.56070 -27.78908 -26.00316 -25.01315 -24.74116 -22.61915 -22.35607 -21.92322 -21.28108 -20.54690 -19.61226 -18.87281 -18.60979 -18.04891 -17.41026 -17.01289 -16.88087 -16.39335 -15.94075 -15.78498 -15.61316 -15.34926 -15.09674 -14.84555 -14.47169 -14.42170 -14.30071 -14.10723 -13.90696 -13.67873 -13.60136 -13.30949 -13.06441 -12.68310 -12.66784 -12.45567 -12.36543 -12.17725 -12.04929 -11.79587 -11.59507 -11.50217 -11.28571 -11.19895 -10.98534 -10.71782 -10.56184 -9.92453 -9.33177 -9.11356 -8.42330 -5.69954 0.05927 0.69179 1.46724 1.54321 1.56140 1.78017 1.90208 2.18121 2.53907 2.71925 2.95159 3.03224 3.25467 3.49455 3.55485 3.65635 3.81350 3.85150 3.94515 4.05779 4.16404 4.17351 4.24290 4.34673 4.38299 4.44708 4.49191 4.53911 4.57252 4.61035 4.70131 4.71326 4.84050 4.87756 4.89106 4.98498 5.02156 5.08165 5.09467 5.18435 5.30956 5.32496 5.77976 5.97464 6.05560 6.22658 6.24864 6.84302 6.92046 7.16721 7.45659 8.22730 8.74802 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026220 B = 0.002467 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.624870 B =11345.681524 C =11820.048174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.051 3.949 3 N -0.377 5.377 4 O 0.101 5.899 5 C 0.017 3.983 6 C -0.276 4.276 7 C 0.597 3.403 8 O -0.570 6.570 9 N -0.601 5.601 10 C 0.128 3.872 11 C 0.045 3.955 12 N -0.524 5.524 13 C 0.086 3.914 14 H 0.041 0.959 15 C -0.105 4.105 16 C 0.114 3.886 17 N -0.624 5.624 18 C -0.335 4.335 19 H 0.017 0.983 20 C -0.052 4.052 21 N -0.940 5.940 22 Si 1.102 2.898 23 H -0.248 1.248 24 H -0.296 1.296 25 H -0.283 1.283 26 C 0.137 3.863 27 C 0.036 3.964 28 C 0.092 3.908 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.280 0.720 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.028 0.972 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.019 0.981 40 H 0.026 0.974 41 H 0.251 0.749 42 H 0.034 0.966 43 H 0.022 0.978 44 H 0.031 0.969 45 H 0.115 0.885 46 H 0.109 0.891 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.456 23.654 -17.225 29.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 N -0.085 5.085 4 O 0.042 5.958 5 C -0.064 4.064 6 C -0.283 4.283 7 C 0.386 3.614 8 O -0.450 6.450 9 N -0.333 5.333 10 C 0.005 3.995 11 C -0.084 4.084 12 N -0.249 5.249 13 C -0.023 4.023 14 H 0.059 0.941 15 C -0.143 4.143 16 C -0.011 4.011 17 N -0.352 5.352 18 C -0.464 4.464 19 H 0.035 0.965 20 C -0.250 4.250 21 N -0.579 5.579 22 Si 0.926 3.074 23 H -0.172 1.172 24 H -0.224 1.224 25 H -0.209 1.209 26 C 0.012 3.988 27 C -0.092 4.092 28 C -0.029 4.029 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.295 0.705 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.047 0.953 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.037 0.963 40 H 0.044 0.956 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.041 0.959 44 H 0.049 0.951 45 H 0.133 0.867 46 H 0.127 0.873 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.276 24.144 -17.721 29.976 hybrid contribution -2.926 -1.137 1.228 3.371 sum -4.201 23.007 -16.492 28.618 Atomic orbital electron populations 1.20305 0.84543 1.04642 1.04302 1.25145 0.99686 0.86610 0.99684 1.73687 0.89923 1.23976 1.20917 1.84578 1.20746 1.23977 1.66528 1.27549 1.00839 0.82877 0.95120 1.22207 0.94360 0.94594 1.17172 1.17079 0.82510 0.83802 0.78032 1.90775 1.27752 1.80437 1.46051 1.48078 1.20912 1.08817 1.55511 1.21673 1.02110 0.80092 0.95604 1.22437 0.89038 1.01672 0.95238 1.61932 1.25952 1.13982 1.23022 1.22565 0.97020 0.94222 0.88495 0.94115 1.22584 0.95653 0.97466 0.98587 1.21814 0.93926 0.88318 0.97004 1.44643 1.47129 1.12465 1.30935 1.19567 0.92500 0.99127 1.35247 0.96540 1.27707 1.06471 0.94560 0.96252 1.71026 1.27145 1.40240 1.19538 0.83310 0.71425 0.76073 0.76640 1.17243 1.22412 1.20901 1.21742 0.94144 0.92968 0.89941 1.22630 1.03237 0.86558 0.96794 1.22689 0.84617 1.02174 0.93438 0.89108 0.89077 0.89777 0.70501 0.89195 0.89516 0.89733 0.95339 0.88469 0.88815 0.96280 0.95641 0.94000 0.94822 0.95946 0.95077 0.86740 0.87290 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 10.45 71.24 0.74 -0.55 16 2 C 0.05 0.95 7.59 45.16 0.34 1.29 16 3 N -0.38 -7.01 12.01 -44.79 -0.54 -7.55 16 4 O 0.10 1.36 11.06 76.95 0.85 2.21 16 5 C 0.02 0.15 10.11 67.61 0.68 0.83 16 6 C -0.28 -4.49 5.99 -18.74 -0.11 -4.60 16 7 C 0.60 12.16 7.68 86.65 0.67 12.83 16 8 O -0.57 -15.91 15.64 -4.04 -0.06 -15.98 16 9 N -0.60 -9.87 3.01 -821.82 -2.47 -12.34 16 10 C 0.13 2.38 6.58 86.35 0.57 2.95 16 11 C 0.04 0.96 5.52 86.38 0.48 1.44 16 12 N -0.52 -11.08 4.52 -861.48 -3.90 -14.98 16 13 C 0.09 2.44 2.73 46.38 0.13 2.57 16 14 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 15 C -0.10 -2.81 5.03 31.78 0.16 -2.65 16 16 C 0.11 4.53 6.21 86.73 0.54 5.07 16 17 N -0.62 -29.87 2.82 -691.54 -1.95 -31.82 16 18 C -0.34 -19.56 10.24 84.03 0.86 -18.70 16 19 H 0.02 1.09 8.06 -2.91 -0.02 1.07 16 20 C -0.05 -3.09 5.38 84.86 0.46 -2.63 16 21 N -0.94 -59.61 13.71 21.65 0.30 -59.32 16 22 Si 1.10 51.84 26.27 68.60 1.80 53.64 16 23 H -0.25 -10.45 6.21 99.48 0.62 -9.84 16 24 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 26 C 0.14 5.29 5.95 86.93 0.52 5.81 16 27 C 0.04 0.51 5.43 86.38 0.47 0.98 16 28 C 0.09 0.87 5.89 86.35 0.51 1.38 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.55 7.23 -2.38 -0.02 1.53 16 32 H 0.28 -0.59 6.20 -2.91 -0.02 -0.61 16 33 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.09 1.82 7.10 -2.39 -0.02 1.80 16 35 H 0.08 1.98 7.05 -2.39 -0.02 1.96 16 36 H 0.03 0.65 8.14 -2.39 -0.02 0.64 16 37 H 0.10 1.98 7.96 -2.39 -0.02 1.96 16 38 H 0.09 2.24 8.11 -2.39 -0.02 2.22 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.03 1.05 4.17 -2.39 -0.01 1.04 16 41 H 0.25 16.08 8.73 -92.71 -0.81 15.27 16 42 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.02 0.91 7.87 -2.39 -0.02 0.89 16 44 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.11 1.22 6.64 -2.39 -0.02 1.20 16 46 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 47 H 0.12 0.47 3.47 -2.39 -0.01 0.46 16 Total: -1.00 -79.24 366.09 1.89 -77.34 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: 0.86 Total: 2.80 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 7.00 Total: 6.00 kcal Atomic # 7 Polarization: -117.45 SS G_CDS: -8.56 Total: -126.01 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.79 Total: -13.77 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 1.80 Total: 53.64 kcal Total: -79.24 1.89 -77.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046058971.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.067 kcal (2) G-P(sol) polarization free energy of solvation -79.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds