Wall clock time and date at job start Tue Mar 31 2020 19:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32140 * 119.90192 * 2 1 4 4 C 1.32076 * 120.07282 * 179.75306 * 3 2 1 5 5 C 1.50698 * 120.06714 * 180.27887 * 4 3 2 6 6 C 1.39448 * 119.87349 * 0.49822 * 4 3 2 7 7 C 1.48148 * 120.09783 * 179.77930 * 6 4 3 8 8 O 1.21517 * 119.99693 * 75.76410 * 7 6 4 9 9 N 1.34770 * 120.00058 * 255.75641 * 7 6 4 10 10 C 1.46504 * 120.00134 * 5.06746 * 9 7 6 11 11 C 1.46498 * 119.99960 * 185.06604 * 9 7 6 12 12 H 1.08994 * 110.89125 * 0.70081 * 11 9 7 13 13 C 1.54915 * 111.00431 * 124.58237 * 11 9 7 14 14 N 1.47428 * 104.82882 * 155.11974 * 13 11 9 15 15 C 1.36935 * 125.64616 * 155.83764 * 14 13 11 16 16 H 1.08011 * 119.99835 * 0.02562 * 15 14 13 17 17 C 1.38813 * 120.00285 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99607 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00010 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47536 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47347 * 120.00352 * 19 17 15 22 22 H 1.48507 * 109.46963 * 240.00261 * 19 17 15 23 23 C 1.47019 * 108.70687 * 335.86975 * 14 13 11 24 24 C 1.54324 * 107.26885 * 1.06423 * 23 14 13 25 25 H 1.09001 * 110.71863 * 263.82496 * 24 23 14 26 26 O 1.42900 * 110.71880 * 140.55746 * 24 23 14 27 27 N 1.33002 * 119.80139 * 359.50284 * 6 4 3 28 28 C 1.31795 * 119.92971 * 0.25450 * 27 6 4 29 29 C 1.50697 * 119.93918 * 180.02562 * 28 27 6 30 30 H 1.09000 * 109.47380 * 269.97779 * 1 2 3 31 31 H 1.09006 * 109.47050 * 29.97905 * 1 2 3 32 32 H 1.08999 * 109.47179 * 149.97481 * 1 2 3 33 33 H 1.09000 * 109.46933 * 265.00409 * 5 4 3 34 34 H 1.09001 * 109.47265 * 25.00322 * 5 4 3 35 35 H 1.08996 * 109.47727 * 145.00374 * 5 4 3 36 36 H 1.09003 * 109.46713 * 265.37807 * 10 9 7 37 37 H 1.09005 * 109.46661 * 25.37074 * 10 9 7 38 38 H 1.08993 * 109.47267 * 145.37265 * 10 9 7 39 39 H 1.08998 * 110.36779 * 273.96009 * 13 11 9 40 40 H 1.08997 * 110.36629 * 36.17235 * 13 11 9 41 41 H 0.97004 * 119.99698 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.87898 * 120.47353 * 23 14 13 43 43 H 1.08997 * 109.88188 * 241.64385 * 23 14 13 44 44 H 0.96698 * 114.00553 * 66.47931 * 26 24 23 45 45 H 1.09003 * 109.47664 * 89.99934 * 29 28 27 46 46 H 1.09000 * 109.47267 * 210.00221 * 29 28 27 47 47 H 1.08998 * 109.47126 * 329.99482 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4864 1.1494 0.0049 5 6 4.2376 2.4559 0.0113 6 6 4.1847 -0.0576 -0.0004 7 6 5.6661 -0.0590 0.0002 8 8 6.2735 0.1945 1.0217 9 7 6.3402 -0.3415 -1.1322 10 6 5.6123 -0.5380 -2.3883 11 6 7.8007 -0.4522 -1.1069 12 1 8.1854 -0.2916 -0.0998 13 6 8.2637 -1.8206 -1.6664 14 7 9.6362 -1.5854 -2.1507 15 6 10.6066 -2.5408 -2.2940 16 1 10.3930 -3.5694 -2.0429 17 6 11.8645 -2.1877 -2.7628 18 7 12.1246 -0.9344 -3.0692 19 14 13.1884 -3.4910 -2.9575 20 1 12.6474 -4.8115 -2.5468 21 1 13.6183 -3.5517 -4.3776 22 1 14.3524 -3.1458 -2.1023 23 6 9.7907 -0.1551 -2.4537 24 6 8.4514 0.5324 -2.1142 25 1 7.8338 0.6355 -3.0064 26 8 8.6766 1.8047 -1.5039 27 7 3.5166 -1.2077 -0.0004 28 6 2.1986 -1.2026 -0.0004 29 6 1.4415 -2.5055 0.0002 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5142 33 1 4.5000 2.7290 -1.0108 34 1 3.6096 3.2339 0.4454 35 1 5.1463 2.3498 0.6037 36 1 5.4240 -1.6014 -2.5366 37 1 4.6632 -0.0035 -2.3456 38 1 6.2079 -0.1554 -3.2170 39 1 8.2634 -2.5727 -0.8775 40 1 7.6182 -2.1327 -2.4874 41 1 13.0036 -0.6877 -3.3972 42 1 10.5895 0.2686 -1.8449 43 1 10.0178 -0.0226 -3.5114 44 1 9.0819 2.4568 -2.0917 45 1 1.2588 -2.8193 1.0280 46 1 0.4895 -2.3728 -0.5138 47 1 2.0284 -3.2670 -0.5134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047451145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:46 Heat of formation + Delta-G solvation = 0.080512 kcal Electronic energy + Delta-G solvation = -29707.798803 eV Core-core repulsion = 25699.067223 eV Total energy + Delta-G solvation = -4008.731581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.73033 -39.75715 -37.87306 -35.33978 -35.19432 -34.87035 -34.50980 -31.90041 -30.58693 -29.44133 -28.53363 -27.46556 -26.93328 -26.13070 -24.47983 -23.74000 -22.44208 -20.79980 -20.44440 -19.18366 -18.42989 -17.62402 -17.13430 -16.75631 -16.17969 -15.65177 -15.48585 -14.90629 -14.76767 -14.36672 -14.07646 -13.86173 -13.78452 -13.46586 -13.37670 -13.12885 -13.06686 -12.89485 -12.71012 -12.53453 -12.47035 -12.37320 -12.26713 -12.06956 -11.95885 -11.78726 -11.47884 -11.24832 -11.09386 -10.88447 -10.82250 -10.27478 -10.10436 -9.98687 -9.84929 -9.36554 -9.22281 -9.07547 -8.74706 -8.44199 -6.94194 -5.78440 -3.13587 0.31796 0.81423 2.41258 2.84012 3.24016 3.37399 3.43261 3.45599 3.63790 3.86371 4.07591 4.25395 4.43548 4.59985 4.63622 4.69202 4.87852 5.02247 5.04030 5.12730 5.20601 5.24609 5.32557 5.34156 5.39565 5.45542 5.46862 5.51750 5.56131 5.60475 5.67077 5.73580 5.85132 5.86762 5.99103 6.07479 6.12091 6.46295 6.54176 6.78566 6.97154 7.32078 7.38517 7.46071 7.47134 7.71739 8.08407 8.15459 8.16695 9.12308 9.72283 10.35029 11.33079 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021584 B = 0.002858 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.939430 B = 9796.207266 C =10613.691705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.093 3.907 3 N -0.436 5.436 4 C 0.116 3.884 5 C -0.111 4.111 6 C 0.050 3.950 7 C 0.585 3.415 8 O -0.517 6.517 9 N -0.584 5.584 10 C 0.080 3.920 11 C 0.134 3.866 12 H 0.117 0.883 13 C 0.133 3.867 14 N -0.599 5.599 15 C -0.229 4.229 16 H 0.082 0.918 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.915 3.085 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.153 3.847 24 C 0.065 3.935 25 H 0.057 0.943 26 O -0.560 6.560 27 N -0.403 5.403 28 C 0.073 3.927 29 C -0.102 4.102 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.027 0.973 41 H 0.253 0.747 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.374 0.626 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.877 3.727 1.608 24.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.049 4.049 3 N -0.151 5.151 4 C -0.024 4.024 5 C -0.168 4.168 6 C -0.093 4.093 7 C 0.369 3.631 8 O -0.391 6.391 9 N -0.315 5.315 10 C -0.063 4.063 11 C 0.030 3.970 12 H 0.135 0.865 13 C 0.006 3.994 14 N -0.327 5.327 15 C -0.357 4.357 16 H 0.099 0.901 17 C -0.203 4.203 18 N -0.569 5.569 19 Si 0.746 3.254 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.028 3.972 24 C 0.004 3.996 25 H 0.075 0.925 26 O -0.364 6.364 27 N -0.119 5.119 28 C -0.070 4.070 29 C -0.159 4.159 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.221 0.779 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.539 3.547 2.596 23.946 hybrid contribution 0.980 -0.392 -0.734 1.286 sum -22.559 3.155 1.862 22.855 Atomic orbital electron populations 1.20808 0.87452 1.04179 1.03721 1.22337 0.98486 0.88863 0.95198 1.68225 1.07613 1.28891 1.10415 1.22206 0.90044 0.96134 0.94009 1.20851 1.00100 0.91798 1.04083 1.21899 0.95883 0.90330 1.01148 1.17581 0.84682 0.76987 0.83871 1.90827 1.68162 1.48023 1.32108 1.47602 1.07379 1.68402 1.08138 1.21754 0.96076 1.02006 0.86455 1.22503 0.76311 0.96042 1.02120 0.86468 1.21753 0.87916 0.93199 0.96565 1.44247 1.07284 1.04478 1.76642 1.19123 0.90089 0.88806 1.37710 0.90053 1.24825 0.97601 0.96672 1.01223 1.69942 1.21570 1.15256 1.50181 0.85992 0.81701 0.80399 0.77345 1.20407 1.21703 1.21638 1.21842 0.91320 0.83816 1.00256 1.23560 0.98305 0.83758 0.93935 0.92548 1.86497 1.84517 1.22577 1.42813 1.68277 1.08218 1.28021 1.07403 1.22152 0.90041 0.96944 0.97863 1.20775 0.99218 0.92250 1.03706 0.89664 0.90001 0.89660 0.89513 0.89609 0.89044 0.91724 0.92273 0.90231 0.93185 0.95546 0.93663 0.92044 0.93347 0.77930 0.89812 0.89789 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 9.78 36.00 0.35 -0.25 16 2 C 0.09 0.95 6.79 -82.28 -0.56 0.39 16 3 N -0.44 -5.35 10.34 -5.24 -0.05 -5.41 16 4 C 0.12 1.56 6.82 -82.04 -0.56 1.00 16 5 C -0.11 -1.29 9.69 36.00 0.35 -0.94 16 6 C 0.05 0.76 4.59 -82.84 -0.38 0.37 16 7 C 0.59 10.22 6.14 -12.19 -0.07 10.14 16 8 O -0.52 -10.76 15.87 5.35 0.08 -10.67 16 9 N -0.58 -9.67 2.91 -172.48 -0.50 -10.17 16 10 C 0.08 1.05 9.14 59.85 0.55 1.60 16 11 C 0.13 2.60 3.18 -65.78 -0.21 2.39 16 12 H 0.12 2.62 7.02 -51.93 -0.36 2.26 16 13 C 0.13 2.80 6.81 -2.52 -0.02 2.78 16 14 N -0.60 -15.16 3.39 -170.07 -0.58 -15.74 16 15 C -0.23 -6.33 10.28 -15.06 -0.15 -6.49 16 16 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 17 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 18 N -0.92 -26.59 10.31 55.49 0.57 -26.02 16 19 Si 0.92 21.94 29.55 -169.99 -5.02 16.92 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C 0.15 3.63 5.15 -3.07 -0.02 3.62 16 24 C 0.06 1.23 3.90 -24.90 -0.10 1.13 16 25 H 0.06 0.95 6.18 -51.93 -0.32 0.63 16 26 O -0.56 -10.10 13.39 -35.23 -0.47 -10.57 16 27 N -0.40 -5.69 10.37 -5.88 -0.06 -5.76 16 28 C 0.07 0.79 6.79 -82.43 -0.56 0.23 16 29 C -0.10 -0.69 9.78 36.00 0.35 -0.34 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.30 5.94 -51.93 -0.31 -0.01 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.23 6.82 -51.93 -0.35 0.88 16 36 H 0.06 0.82 7.92 -51.93 -0.41 0.41 16 37 H 0.06 0.70 6.81 -51.93 -0.35 0.34 16 38 H 0.08 0.99 6.19 -51.93 -0.32 0.67 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.03 0.53 6.99 -51.93 -0.36 0.16 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.06 1.65 7.30 -51.93 -0.38 1.27 16 43 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 44 H 0.37 5.14 9.12 45.56 0.42 5.55 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.34 5.95 -51.93 -0.31 0.03 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 378.63 15.07 5.71 5.71 Total: -1.00 -34.84 378.63 -7.41 -42.25 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.96 Total: 4.11 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: -1.12 Total: 15.35 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -0.62 Total: -63.09 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.39 Total: -21.24 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.84 -7.41 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047451145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.331 kcal (2) G-P(sol) polarization free energy of solvation -34.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds