Wall clock time and date at job start Tue Mar 31 2020 19:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32129 * 119.90369 * 2 1 4 4 C 1.32081 * 120.07454 * 179.75442 * 3 2 1 5 5 C 1.50699 * 120.06566 * 180.27679 * 4 3 2 6 6 C 1.39443 * 119.87141 * 0.53982 * 4 3 2 7 7 C 1.48144 * 120.09979 * 179.73391 * 6 4 3 8 8 O 1.21518 * 120.00186 * 0.12786 * 7 6 4 9 9 N 1.34779 * 120.00147 * 180.12415 * 7 6 4 10 10 C 1.46503 * 119.99895 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47039 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.68204 * 303.13831 * 11 10 9 13 13 C 1.53291 * 109.68553 * 182.61963 * 11 10 9 14 14 O 1.42956 * 109.22658 * 187.97308 * 13 11 10 15 15 C 1.42959 * 114.16715 * 62.58092 * 14 13 11 16 16 C 1.53303 * 109.22105 * 297.41936 * 15 14 13 17 17 N 1.47154 * 109.68443 * 63.65364 * 11 10 9 18 18 C 1.36940 * 120.97771 * 350.23298 * 17 11 10 19 19 H 1.07996 * 120.00030 * 33.63345 * 18 17 11 20 20 C 1.38812 * 119.99774 * 213.63127 * 18 17 11 21 21 N 1.31622 * 120.00066 * 7.34496 * 20 18 17 22 22 Si 1.86802 * 119.99918 * 187.34329 * 20 18 17 23 23 H 1.48495 * 109.47078 * 89.99992 * 22 20 18 24 24 H 1.48495 * 109.47210 * 210.00253 * 22 20 18 25 25 H 1.48505 * 109.46928 * 329.99952 * 22 20 18 26 26 N 1.33002 * 119.80242 * 359.46387 * 6 4 3 27 27 C 1.31801 * 119.93009 * 0.24773 * 26 6 4 28 28 C 1.50698 * 119.93740 * 179.97438 * 27 26 6 29 29 H 1.08999 * 109.47360 * 269.97530 * 1 2 3 30 30 H 1.08999 * 109.47236 * 29.98283 * 1 2 3 31 31 H 1.09011 * 109.47023 * 149.97406 * 1 2 3 32 32 H 1.08992 * 109.47451 * 262.66575 * 5 4 3 33 33 H 1.08994 * 109.47142 * 22.67295 * 5 4 3 34 34 H 1.09012 * 109.46857 * 142.66961 * 5 4 3 35 35 H 0.97000 * 119.99719 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47149 * 60.00382 * 10 9 7 37 37 H 1.08999 * 109.46984 * 299.99855 * 10 9 7 38 38 H 1.09005 * 109.50921 * 307.90301 * 13 11 10 39 39 H 1.09001 * 109.51677 * 67.99452 * 13 11 10 40 40 H 1.09002 * 109.51745 * 57.33901 * 15 14 13 41 41 H 1.08995 * 109.51611 * 177.49506 * 15 14 13 42 42 H 1.08995 * 109.67869 * 172.02694 * 16 15 14 43 43 H 1.08996 * 109.68090 * 292.57721 * 16 15 14 44 44 H 0.96996 * 119.99769 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.47079 * 90.00173 * 28 27 26 46 46 H 1.08994 * 109.47440 * 210.00006 * 28 27 26 47 47 H 1.08998 * 109.47295 * 330.00679 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1454 0.0000 4 6 3.4865 1.1493 0.0049 5 6 4.2376 2.4558 0.0112 6 6 4.1847 -0.0577 -0.0013 7 6 5.6661 -0.0592 -0.0018 8 8 6.2748 0.9925 0.0055 9 7 6.3389 -1.2270 -0.0104 10 6 7.8039 -1.2284 -0.0103 11 6 8.3125 -2.6713 -0.0215 12 1 7.9054 -3.2108 0.8337 13 6 9.8440 -2.6795 0.0445 14 8 10.3166 -4.0141 -0.1533 15 6 9.9940 -4.5658 -1.4321 16 6 8.4701 -4.6543 -1.5737 17 7 7.8975 -3.3335 -1.2684 18 6 7.0050 -2.7380 -2.1194 19 1 6.9963 -1.6635 -2.2272 20 6 6.1117 -3.5156 -2.8435 21 7 6.0222 -4.8074 -2.6074 22 14 5.0367 -2.7286 -4.1528 23 1 5.7418 -2.7640 -5.4592 24 1 3.7587 -3.4772 -4.2596 25 1 4.7549 -1.3189 -3.7803 26 7 3.5166 -1.2078 -0.0014 27 6 2.1986 -1.2027 -0.0005 28 6 1.4414 -2.5056 -0.0011 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3634 -0.8898 -0.5143 32 1 4.5362 2.7082 -1.0062 33 1 3.5952 3.2423 0.4071 34 1 5.1249 2.3618 0.6375 35 1 5.8531 -2.0666 -0.0166 36 1 8.1677 -0.7215 0.8835 37 1 8.1678 -0.7084 -0.8965 38 1 10.2454 -2.0318 -0.7350 39 1 10.1684 -2.3185 1.0205 40 1 10.3959 -3.9250 -2.2170 41 1 10.4261 -5.5627 -1.5181 42 1 8.2122 -4.9395 -2.5935 43 1 8.0788 -5.3938 -0.8751 44 1 5.3977 -5.3506 -3.1132 45 1 1.2596 -2.8207 1.0264 46 1 0.4891 -2.3722 -0.5141 47 1 2.0281 -3.2665 -0.5159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051013296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:58 Heat of formation + Delta-G solvation = -5.432705 kcal Electronic energy + Delta-G solvation = -30328.073953 eV Core-core repulsion = 26319.103302 eV Total energy + Delta-G solvation = -4008.970652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.34580 -39.19044 -38.28657 -35.51140 -34.84939 -34.22092 -33.59416 -31.57116 -30.48751 -30.04156 -28.94914 -27.23737 -26.48565 -25.07266 -23.50212 -23.43416 -22.18391 -21.44554 -20.22543 -19.65174 -18.17505 -17.38342 -16.39372 -15.97160 -15.73410 -15.57008 -15.15629 -14.93599 -14.63830 -14.38667 -14.12743 -13.89303 -13.75581 -13.41395 -13.24397 -13.10519 -13.03010 -12.89963 -12.64874 -12.62264 -12.18001 -12.10359 -11.86042 -11.81601 -11.56999 -11.41647 -11.04146 -10.91827 -10.77068 -10.69564 -10.42125 -10.25353 -10.08293 -9.70972 -9.65423 -9.06117 -8.88960 -8.81958 -8.63601 -8.30294 -6.69031 -5.90229 -3.41948 0.52093 1.14089 3.00257 3.27087 3.34036 3.37167 3.48135 3.89877 3.99370 4.08506 4.34269 4.42672 4.52850 4.70627 4.95210 5.12579 5.18929 5.24703 5.29608 5.32506 5.40669 5.57209 5.57666 5.66905 5.71752 5.74610 5.83516 5.84844 5.94587 5.99285 6.02025 6.05939 6.14893 6.19954 6.26078 6.33299 6.50691 6.55019 6.74505 7.03296 7.07297 7.30027 7.49791 7.70908 7.75314 7.86506 8.15476 8.31610 8.67031 9.07083 9.66145 10.26283 11.16597 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012588 B = 0.004486 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.760895 B = 6240.116508 C = 7378.802747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.097 3.903 3 N -0.447 5.447 4 C 0.131 3.869 5 C -0.105 4.105 6 C 0.034 3.966 7 C 0.568 3.432 8 O -0.547 6.547 9 N -0.669 5.669 10 C 0.133 3.867 11 C 0.124 3.876 12 H 0.042 0.958 13 C 0.057 3.943 14 O -0.392 6.392 15 C 0.034 3.966 16 C 0.145 3.855 17 N -0.590 5.590 18 C -0.253 4.253 19 H 0.068 0.932 20 C 0.019 3.981 21 N -0.897 5.897 22 Si 0.894 3.106 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.282 1.282 26 N -0.394 5.394 27 C 0.070 3.930 28 C -0.104 4.104 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.424 0.576 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.029 0.971 44 H 0.255 0.745 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.327 5.824 6.185 10.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.045 4.045 3 N -0.162 5.162 4 C -0.009 4.009 5 C -0.162 4.162 6 C -0.108 4.108 7 C 0.351 3.649 8 O -0.427 6.427 9 N -0.319 5.319 10 C 0.009 3.991 11 C 0.017 3.983 12 H 0.059 0.941 13 C -0.022 4.022 14 O -0.311 6.311 15 C -0.043 4.043 16 C 0.020 3.980 17 N -0.316 5.316 18 C -0.382 4.382 19 H 0.086 0.914 20 C -0.181 4.181 21 N -0.540 5.540 22 Si 0.724 3.276 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.207 1.207 26 N -0.111 5.111 27 C -0.073 4.073 28 C -0.162 4.162 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.130 0.870 35 H 0.263 0.737 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.048 0.952 44 H 0.065 0.935 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.841 6.301 6.236 10.616 hybrid contribution -1.092 -0.069 -1.158 1.593 sum -6.932 6.232 5.079 10.616 Atomic orbital electron populations 1.20800 0.87683 1.04100 1.03522 1.22349 0.98384 0.89064 0.94724 1.68248 1.07938 1.28811 1.11225 1.22317 0.89706 0.96709 0.92214 1.21066 1.00099 0.90426 1.04610 1.22060 0.96178 0.89943 1.02593 1.17535 0.84816 0.84583 0.77944 1.90658 1.68468 1.30956 1.52612 1.45846 1.07432 1.09015 1.69559 1.21273 0.79529 0.97040 1.01223 1.21438 0.93457 0.91832 0.91539 0.94083 1.22851 0.94613 0.84356 1.00426 1.87798 1.77928 1.29324 1.36022 1.23365 0.99473 0.97220 0.84289 1.21406 0.87348 0.87028 1.02225 1.44056 1.50236 1.18870 1.18436 1.19081 1.09471 0.91690 1.17992 0.91408 1.25132 0.96973 0.95862 1.00156 1.69949 1.37943 1.04545 1.41602 0.86419 0.80320 0.78758 0.82114 1.21331 1.21492 1.20704 1.68269 1.08359 1.28502 1.05939 1.22123 0.90210 0.96804 0.98190 1.20784 0.99231 0.92655 1.03487 0.89752 0.90154 0.89703 0.89884 0.91462 0.86996 0.73687 0.91949 0.90992 0.93480 0.89900 0.94126 0.90252 0.89061 0.95245 0.93490 0.89938 0.90106 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 9.78 36.01 0.35 -0.60 16 2 C 0.10 1.36 6.79 -82.28 -0.56 0.80 16 3 N -0.45 -7.07 10.34 -5.24 -0.05 -7.12 16 4 C 0.13 2.21 6.82 -82.04 -0.56 1.66 16 5 C -0.10 -1.54 8.94 36.01 0.32 -1.21 16 6 C 0.03 0.63 6.75 -82.84 -0.56 0.07 16 7 C 0.57 11.10 7.78 -12.19 -0.09 11.01 16 8 O -0.55 -10.87 13.25 5.35 0.07 -10.80 16 9 N -0.67 -13.24 3.95 -61.15 -0.24 -13.48 16 10 C 0.13 2.47 4.43 -4.04 -0.02 2.45 16 11 C 0.12 2.44 3.17 -67.42 -0.21 2.23 16 12 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 13 C 0.06 0.99 6.29 37.31 0.23 1.23 16 14 O -0.39 -7.58 10.74 -35.23 -0.38 -7.96 16 15 C 0.03 0.66 6.99 37.31 0.26 0.92 16 16 C 0.15 3.30 5.35 -3.53 -0.02 3.28 16 17 N -0.59 -13.67 3.03 -164.30 -0.50 -14.16 16 18 C -0.25 -6.37 7.16 -15.06 -0.11 -6.47 16 19 H 0.07 1.76 5.95 -52.49 -0.31 1.45 16 20 C 0.02 0.49 5.12 -17.43 -0.09 0.40 16 21 N -0.90 -24.30 11.13 55.49 0.62 -23.68 16 22 Si 0.89 21.57 29.56 -169.99 -5.02 16.54 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 N -0.39 -7.27 9.64 -5.88 -0.06 -7.33 16 27 C 0.07 1.08 6.79 -82.42 -0.56 0.52 16 28 C -0.10 -1.22 9.78 36.00 0.35 -0.87 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.62 5.94 -51.92 -0.31 0.31 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.11 1.72 5.73 -51.92 -0.30 1.43 16 35 H 0.42 9.09 6.93 -40.82 -0.28 8.81 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.43 7.37 -51.93 -0.38 1.05 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.09 2.28 6.42 -51.93 -0.33 1.95 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.08 0.71 5.94 -51.93 -0.31 0.40 16 47 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 373.35 15.07 5.63 5.63 Total: -1.00 -30.10 373.35 -8.05 -38.16 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.86 Total: 8.80 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: -1.26 Total: 15.42 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: -0.23 Total: -65.78 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.31 Total: -18.76 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.10 -8.05 -38.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051013296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.725 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds