Wall clock time and date at job start Tue Mar 31 2020 19:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32129 * 119.90369 * 2 1 4 4 C 1.32081 * 120.07454 * 179.75442 * 3 2 1 5 5 C 1.50699 * 120.06566 * 180.27679 * 4 3 2 6 6 C 1.39443 * 119.87141 * 0.53982 * 4 3 2 7 7 C 1.48144 * 120.09979 * 179.73391 * 6 4 3 8 8 O 1.21518 * 120.00186 * 0.12786 * 7 6 4 9 9 N 1.34779 * 120.00147 * 180.12415 * 7 6 4 10 10 C 1.46503 * 119.99895 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47039 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.68204 * 303.13831 * 11 10 9 13 13 C 1.53291 * 109.68553 * 182.61963 * 11 10 9 14 14 O 1.42956 * 109.22658 * 187.97308 * 13 11 10 15 15 C 1.42959 * 114.16715 * 62.58092 * 14 13 11 16 16 C 1.53303 * 109.22105 * 297.41936 * 15 14 13 17 17 N 1.47154 * 109.68443 * 63.65364 * 11 10 9 18 18 C 1.36940 * 120.97771 * 350.23298 * 17 11 10 19 19 H 1.07996 * 120.00030 * 33.63345 * 18 17 11 20 20 C 1.38812 * 119.99774 * 213.63127 * 18 17 11 21 21 N 1.31622 * 120.00066 * 7.34496 * 20 18 17 22 22 Si 1.86802 * 119.99918 * 187.34329 * 20 18 17 23 23 H 1.48495 * 109.47078 * 89.99992 * 22 20 18 24 24 H 1.48495 * 109.47210 * 210.00253 * 22 20 18 25 25 H 1.48505 * 109.46928 * 329.99952 * 22 20 18 26 26 N 1.33002 * 119.80242 * 359.46387 * 6 4 3 27 27 C 1.31801 * 119.93009 * 0.24773 * 26 6 4 28 28 C 1.50698 * 119.93740 * 179.97438 * 27 26 6 29 29 H 1.08999 * 109.47360 * 269.97530 * 1 2 3 30 30 H 1.08999 * 109.47236 * 29.98283 * 1 2 3 31 31 H 1.09011 * 109.47023 * 149.97406 * 1 2 3 32 32 H 1.08992 * 109.47451 * 262.66575 * 5 4 3 33 33 H 1.08994 * 109.47142 * 22.67295 * 5 4 3 34 34 H 1.09012 * 109.46857 * 142.66961 * 5 4 3 35 35 H 0.97000 * 119.99719 * 0.02562 * 9 7 6 36 36 H 1.09001 * 109.47149 * 60.00382 * 10 9 7 37 37 H 1.08999 * 109.46984 * 299.99855 * 10 9 7 38 38 H 1.09005 * 109.50921 * 307.90301 * 13 11 10 39 39 H 1.09001 * 109.51677 * 67.99452 * 13 11 10 40 40 H 1.09002 * 109.51745 * 57.33901 * 15 14 13 41 41 H 1.08995 * 109.51611 * 177.49506 * 15 14 13 42 42 H 1.08995 * 109.67869 * 172.02694 * 16 15 14 43 43 H 1.08996 * 109.68090 * 292.57721 * 16 15 14 44 44 H 0.96996 * 119.99769 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.47079 * 90.00173 * 28 27 26 46 46 H 1.08994 * 109.47440 * 210.00006 * 28 27 26 47 47 H 1.08998 * 109.47295 * 330.00679 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1454 0.0000 4 6 3.4865 1.1493 0.0049 5 6 4.2376 2.4558 0.0112 6 6 4.1847 -0.0577 -0.0013 7 6 5.6661 -0.0592 -0.0018 8 8 6.2748 0.9925 0.0055 9 7 6.3389 -1.2270 -0.0104 10 6 7.8039 -1.2284 -0.0103 11 6 8.3125 -2.6713 -0.0215 12 1 7.9054 -3.2108 0.8337 13 6 9.8440 -2.6795 0.0445 14 8 10.3166 -4.0141 -0.1533 15 6 9.9940 -4.5658 -1.4321 16 6 8.4701 -4.6543 -1.5737 17 7 7.8975 -3.3335 -1.2684 18 6 7.0050 -2.7380 -2.1194 19 1 6.9963 -1.6635 -2.2272 20 6 6.1117 -3.5156 -2.8435 21 7 6.0222 -4.8074 -2.6074 22 14 5.0367 -2.7286 -4.1528 23 1 5.7418 -2.7640 -5.4592 24 1 3.7587 -3.4772 -4.2596 25 1 4.7549 -1.3189 -3.7803 26 7 3.5166 -1.2078 -0.0014 27 6 2.1986 -1.2027 -0.0005 28 6 1.4414 -2.5056 -0.0011 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3634 -0.8898 -0.5143 32 1 4.5362 2.7082 -1.0062 33 1 3.5952 3.2423 0.4071 34 1 5.1249 2.3618 0.6375 35 1 5.8531 -2.0666 -0.0166 36 1 8.1677 -0.7215 0.8835 37 1 8.1678 -0.7084 -0.8965 38 1 10.2454 -2.0318 -0.7350 39 1 10.1684 -2.3185 1.0205 40 1 10.3959 -3.9250 -2.2170 41 1 10.4261 -5.5627 -1.5181 42 1 8.2122 -4.9395 -2.5935 43 1 8.0788 -5.3938 -0.8751 44 1 5.3977 -5.3506 -3.1132 45 1 1.2596 -2.8207 1.0264 46 1 0.4891 -2.3722 -0.5141 47 1 2.0281 -3.2665 -0.5159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051013296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:57 Heat of formation + Delta-G solvation = -26.499976 kcal Electronic energy + Delta-G solvation = -30328.987499 eV Core-core repulsion = 26319.103302 eV Total energy + Delta-G solvation = -4009.884197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.57713 -40.70474 -39.83934 -37.05925 -36.15345 -35.37276 -35.28670 -33.28964 -32.18674 -31.17734 -29.96137 -28.99182 -27.80921 -26.46692 -25.24613 -24.60550 -23.63245 -22.83517 -21.69249 -21.32842 -19.48545 -18.92724 -18.05932 -17.60543 -17.24678 -16.91681 -16.44656 -16.29004 -16.23134 -16.07218 -15.60273 -15.39109 -15.25394 -14.84894 -14.57056 -14.48010 -14.25027 -13.97970 -13.86791 -13.72525 -13.54558 -13.34642 -13.18583 -13.11325 -12.94849 -12.80937 -12.78441 -12.54729 -12.50721 -12.20548 -12.01450 -11.90206 -11.87245 -11.30720 -11.10648 -10.67612 -10.59575 -10.16074 -10.12204 -9.78411 -8.59842 -7.90210 -5.42253 -0.71987 -0.08842 1.30935 1.34820 1.39759 1.61799 2.08066 2.39258 2.59306 2.86018 2.90181 3.03893 3.24717 3.27593 3.42809 3.59683 3.81780 3.99135 4.01268 4.15467 4.22482 4.32377 4.48158 4.50169 4.57057 4.63474 4.63859 4.65823 4.67774 4.71133 4.73604 4.78042 4.85539 4.94567 5.00414 5.02473 5.10366 5.21237 5.29118 5.43672 5.53590 5.63581 5.65901 6.08851 6.29977 6.36689 6.45419 6.67739 7.10072 7.12496 7.74038 8.31061 9.14418 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012588 B = 0.004486 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.760895 B = 6240.116508 C = 7378.802747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.108 3.892 3 N -0.456 5.456 4 C 0.123 3.877 5 C -0.098 4.098 6 C -0.001 4.001 7 C 0.565 3.435 8 O -0.557 6.557 9 N -0.676 5.676 10 C 0.139 3.861 11 C 0.125 3.875 12 H 0.034 0.966 13 C 0.059 3.941 14 O -0.397 6.397 15 C 0.047 3.953 16 C 0.151 3.849 17 N -0.604 5.604 18 C -0.236 4.236 19 H 0.059 0.941 20 C -0.021 4.021 21 N -0.920 5.920 22 Si 0.938 3.062 23 H -0.286 1.286 24 H -0.289 1.289 25 H -0.294 1.294 26 N -0.425 5.425 27 C 0.058 3.942 28 C -0.101 4.101 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.414 0.586 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.120 0.880 40 H 0.044 0.956 41 H 0.105 0.895 42 H 0.065 0.935 43 H 0.006 0.994 44 H 0.250 0.750 45 H 0.104 0.896 46 H 0.116 0.884 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.366 6.578 6.978 12.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.036 4.036 3 N -0.171 5.171 4 C -0.016 4.016 5 C -0.155 4.155 6 C -0.141 4.141 7 C 0.350 3.650 8 O -0.437 6.437 9 N -0.325 5.325 10 C 0.015 3.985 11 C 0.019 3.981 12 H 0.052 0.948 13 C -0.019 4.019 14 O -0.315 6.315 15 C -0.031 4.031 16 C 0.025 3.975 17 N -0.330 5.330 18 C -0.367 4.367 19 H 0.077 0.923 20 C -0.218 4.218 21 N -0.566 5.566 22 Si 0.769 3.231 23 H -0.213 1.213 24 H -0.215 1.215 25 H -0.220 1.220 26 N -0.143 5.143 27 C -0.087 4.087 28 C -0.158 4.158 29 H 0.128 0.872 30 H 0.105 0.895 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.252 0.748 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.137 0.863 40 H 0.063 0.937 41 H 0.123 0.877 42 H 0.083 0.917 43 H 0.024 0.976 44 H 0.060 0.940 45 H 0.123 0.877 46 H 0.134 0.866 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.832 7.088 7.037 12.101 hybrid contribution -0.877 -0.281 -1.339 1.625 sum -7.709 6.807 5.698 11.758 Atomic orbital electron populations 1.21024 0.83750 1.05628 1.05487 1.23179 1.00711 0.88024 0.91669 1.68379 1.07259 1.29602 1.11907 1.22564 0.90437 0.96766 0.91839 1.21003 0.99958 0.90253 1.04259 1.21955 0.95663 0.90905 1.05554 1.17776 0.85602 0.84256 0.77377 1.90636 1.69026 1.30996 1.53085 1.45885 1.07809 1.08710 1.70087 1.21273 0.79098 0.96343 1.01748 1.21579 0.95209 0.91865 0.89491 0.94849 1.22972 0.92477 0.83788 1.02678 1.87803 1.77693 1.30191 1.35833 1.23217 0.96444 0.98857 0.84594 1.21235 0.89970 0.86341 0.99941 1.44254 1.50121 1.19017 1.19631 1.19054 1.08945 0.91173 1.17490 0.92337 1.25531 0.98227 0.96222 1.01841 1.70050 1.38762 1.05166 1.42611 0.85736 0.79401 0.77253 0.80728 1.21290 1.21462 1.22023 1.68212 1.10195 1.28901 1.06957 1.22816 0.89501 0.98902 0.97496 1.20925 0.99749 0.90128 1.05024 0.87236 0.89468 0.87295 0.90201 0.89285 0.87977 0.74837 0.89274 0.92452 0.92986 0.86257 0.93718 0.87715 0.91690 0.97611 0.94009 0.87749 0.86606 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.47 9.78 71.24 0.70 -0.77 16 2 C 0.11 2.80 6.79 42.63 0.29 3.09 16 3 N -0.46 -13.83 10.34 -170.48 -1.76 -15.59 16 4 C 0.12 4.15 6.82 42.81 0.29 4.44 16 5 C -0.10 -2.84 8.94 71.24 0.64 -2.20 16 6 C 0.00 -0.04 6.75 41.89 0.28 0.24 16 7 C 0.57 22.67 7.78 86.87 0.68 23.34 16 8 O -0.56 -22.48 13.25 -3.77 -0.05 -22.53 16 9 N -0.68 -27.41 3.95 -465.68 -1.84 -29.25 16 10 C 0.14 5.12 4.43 86.38 0.38 5.51 16 11 C 0.12 4.84 3.17 44.96 0.14 4.98 16 12 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 13 C 0.06 1.95 6.29 72.08 0.45 2.41 16 14 O -0.40 -14.52 10.74 -148.98 -1.60 -16.12 16 15 C 0.05 1.73 6.99 72.08 0.50 2.24 16 16 C 0.15 6.93 5.35 86.36 0.46 7.40 16 17 N -0.60 -28.31 3.03 -673.71 -2.04 -30.35 16 18 C -0.24 -12.14 7.16 84.03 0.60 -11.54 16 19 H 0.06 3.12 5.95 -2.91 -0.02 3.10 16 20 C -0.02 -1.12 5.12 84.86 0.43 -0.69 16 21 N -0.92 -51.26 11.13 21.65 0.24 -51.02 16 22 Si 0.94 45.38 29.56 68.60 2.03 47.41 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 26 N -0.43 -15.97 9.64 -172.53 -1.66 -17.63 16 27 C 0.06 1.71 6.79 42.68 0.29 2.00 16 28 C -0.10 -2.18 9.78 71.24 0.70 -1.48 16 29 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.11 1.08 5.94 -2.38 -0.01 1.06 16 32 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.10 3.17 5.73 -2.38 -0.01 3.16 16 35 H 0.41 18.44 6.93 -92.71 -0.64 17.80 16 36 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.06 2.28 7.37 -2.39 -0.02 2.27 16 38 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 42 H 0.06 3.33 6.42 -2.39 -0.02 3.31 16 43 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 45 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 46 H 0.12 1.62 5.94 -2.39 -0.01 1.61 16 47 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -67.18 373.35 0.52 -66.66 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.36 Total: 29.48 kcal Atomic # 6 Polarization: 32.11 SS G_CDS: 6.84 Total: 38.96 kcal Atomic # 7 Polarization: -136.78 SS G_CDS: -7.06 Total: -143.85 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -1.65 Total: -38.66 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -67.18 0.52 -66.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051013296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.165 kcal (2) G-P(sol) polarization free energy of solvation -67.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds