Wall clock time and date at job start Tue Mar 31 2020 19:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35313 * 126.66855 * 2 1 4 4 C 1.42269 * 103.92383 * 180.02562 * 3 2 1 5 5 C 1.48328 * 126.93863 * 179.97438 * 4 3 2 6 6 O 1.21496 * 120.00083 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99959 * 180.27665 * 5 4 3 8 8 C 1.47022 * 125.64831 * 359.41722 * 7 5 4 9 9 C 1.54319 * 107.27307 * 180.96769 * 8 7 5 10 10 C 1.55155 * 102.86405 * 22.52846 * 9 8 7 11 11 H 1.08999 * 111.03680 * 82.38969 * 10 9 8 12 12 N 1.46904 * 110.99934 * 206.22712 * 10 9 8 13 13 C 1.46900 * 111.00204 * 297.94960 * 12 10 9 14 14 C 1.53231 * 109.34037 * 172.74821 * 13 12 10 15 15 N 1.47087 * 108.52070 * 53.83014 * 14 13 12 16 16 C 1.36934 * 120.87705 * 128.83765 * 15 14 13 17 17 H 1.08008 * 119.99603 * 206.62592 * 16 15 14 18 18 C 1.38809 * 120.00509 * 26.62674 * 16 15 14 19 19 N 1.31620 * 119.99943 * 17.03426 * 18 16 15 20 20 Si 1.86803 * 120.00176 * 197.04108 * 18 16 15 21 21 H 1.48497 * 109.47356 * 89.99506 * 20 18 16 22 22 H 1.48501 * 109.47023 * 210.00042 * 20 18 16 23 23 H 1.48497 * 109.47023 * 329.99526 * 20 18 16 24 24 C 1.47073 * 118.23676 * 308.81669 * 15 14 13 25 25 C 1.46903 * 110.99711 * 173.64930 * 12 10 9 26 26 C 1.47423 * 125.64828 * 179.72358 * 7 5 4 27 27 N 1.30979 * 106.12223 * 0.23045 * 4 3 2 28 28 O 1.20904 * 111.44356 * 359.59420 * 27 4 3 29 29 H 1.09003 * 109.46991 * 89.99493 * 1 2 3 30 30 H 1.08993 * 109.47415 * 209.99669 * 1 2 3 31 31 H 1.09001 * 109.46987 * 330.00248 * 1 2 3 32 32 H 1.08010 * 128.03555 * 0.02623 * 3 2 1 33 33 H 1.08994 * 109.88063 * 300.51416 * 8 7 5 34 34 H 1.08997 * 109.87948 * 61.67800 * 8 7 5 35 35 H 1.09004 * 110.92456 * 264.10796 * 9 8 7 36 36 H 1.09007 * 110.73989 * 140.85670 * 9 8 7 37 37 H 1.09003 * 109.49330 * 292.71235 * 13 12 10 38 38 H 1.08995 * 109.49295 * 52.78699 * 13 12 10 39 39 H 1.09003 * 109.63080 * 294.12503 * 14 13 12 40 40 H 1.08995 * 109.79208 * 173.63295 * 14 13 12 41 41 H 0.97003 * 119.99878 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.62995 * 291.47308 * 24 15 14 43 43 H 1.09005 * 109.78947 * 170.99137 * 24 15 14 44 44 H 1.09005 * 109.49265 * 307.21455 * 25 12 10 45 45 H 1.09004 * 109.49112 * 67.29027 * 25 12 10 46 46 H 1.08994 * 110.37463 * 274.67599 * 26 7 5 47 47 H 1.09004 * 110.36892 * 36.88767 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0854 0.0000 4 6 3.6271 0.5353 -0.0006 5 6 4.9076 1.2840 -0.0014 6 8 4.9009 2.4990 -0.0011 7 7 6.0785 0.6166 -0.0076 8 6 6.2313 -0.8456 -0.0018 9 6 7.7445 -1.1481 0.0125 10 6 8.3520 0.1560 0.5934 11 1 8.2978 0.1618 1.6820 12 7 9.7360 0.3410 0.1368 13 6 10.5950 -0.7560 0.6023 14 6 11.9796 -0.6242 -0.0408 15 7 12.4941 0.7267 0.2306 16 6 13.7434 0.9095 0.7607 17 1 13.9591 1.7936 1.3424 18 6 14.7326 -0.0413 0.5505 19 7 14.5964 -0.9316 -0.4093 20 14 16.2571 -0.0576 1.6299 21 1 16.0191 -0.9273 2.8097 22 1 17.4085 -0.5820 0.8524 23 1 16.5557 1.3239 2.0855 24 6 11.6315 1.8759 -0.0829 25 6 10.2606 1.6457 0.5618 26 6 7.4181 1.2319 -0.0149 27 7 3.4761 -0.7657 -0.0060 28 8 2.3073 -1.0750 -0.0006 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 2.0301 2.1272 0.0004 33 1 5.7593 -1.2641 0.8871 34 1 5.7789 -1.2691 -0.8985 35 1 8.1146 -1.3300 -0.9965 36 1 7.9623 -1.9971 0.6605 37 1 10.6915 -0.7073 1.6870 38 1 10.1516 -1.7105 0.3188 39 1 11.8993 -0.7760 -1.1172 40 1 12.6560 -1.3658 0.3841 41 1 15.2875 -1.5963 -0.5560 42 1 11.5177 1.9644 -1.1634 43 1 12.0744 2.7891 0.3146 44 1 9.5746 2.4329 0.2490 45 1 10.3617 1.6610 1.6471 46 1 7.7227 1.4658 -1.0349 47 1 7.4251 2.1331 0.5984 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051977858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:50 Heat of formation + Delta-G solvation = 74.523199 kcal Electronic energy + Delta-G solvation = -28871.890811 eV Core-core repulsion = 24866.387307 eV Total energy + Delta-G solvation = -4005.503504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.43135 -40.26797 -38.53876 -36.85913 -34.53428 -34.28393 -33.64375 -31.69008 -30.38932 -30.15500 -28.64654 -28.24219 -26.36454 -24.90520 -23.59325 -22.84417 -22.83131 -21.81913 -20.43599 -19.39304 -19.15808 -18.21040 -17.61577 -17.22268 -17.06369 -16.24682 -15.71664 -15.03420 -14.79635 -14.42173 -14.27044 -14.15095 -13.97366 -13.92382 -13.77585 -13.47769 -13.36299 -13.20779 -12.97690 -12.85748 -12.68999 -12.39437 -11.93864 -11.69968 -11.29556 -11.22578 -11.05368 -10.91238 -10.78121 -10.75684 -10.49139 -10.43052 -10.29692 -10.04844 -9.82434 -9.73876 -9.60688 -8.87934 -8.51343 -7.91991 -6.67561 -5.78551 -3.19685 0.78523 1.29735 2.43620 2.64054 2.89475 3.37624 3.44627 3.45842 3.56965 4.01284 4.20725 4.43676 4.50021 4.56255 4.60438 4.72928 4.82975 4.87537 5.01418 5.10485 5.20948 5.26818 5.29917 5.38995 5.45357 5.51854 5.54144 5.69589 5.79395 5.83122 5.87869 5.93841 5.99725 6.12723 6.16052 6.24708 6.31891 6.51663 6.67501 6.92169 7.15141 7.22580 7.53301 7.58384 7.61432 7.67906 7.80790 7.82900 8.43070 9.20956 9.84172 10.42555 11.30278 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.038369 B = 0.002097 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.581297 B =13347.130038 C =13820.607200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.034 4.034 3 C -0.185 4.185 4 C -0.019 4.019 5 C 0.610 3.390 6 O -0.525 6.525 7 N -0.601 5.601 8 C 0.107 3.893 9 C -0.123 4.123 10 C 0.069 3.931 11 H 0.052 0.948 12 N -0.520 5.520 13 C 0.036 3.964 14 C 0.178 3.822 15 N -0.595 5.595 16 C -0.251 4.251 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.149 3.851 25 C 0.041 3.959 26 C 0.117 3.883 27 N -0.327 5.327 28 O 0.119 5.881 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.181 0.819 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.026 0.974 38 H 0.063 0.937 39 H 0.027 0.973 40 H 0.089 0.911 41 H 0.254 0.746 42 H 0.026 0.974 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.029 0.971 46 H 0.086 0.914 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.311 -1.013 1.012 28.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 C -0.207 4.207 4 C -0.178 4.178 5 C 0.396 3.604 6 O -0.400 6.400 7 N -0.335 5.335 8 C -0.016 4.016 9 C -0.162 4.162 10 C -0.041 4.041 11 H 0.070 0.930 12 N -0.246 5.246 13 C -0.092 4.092 14 C 0.052 3.948 15 N -0.319 5.319 16 C -0.381 4.381 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.548 5.548 20 Si 0.733 3.267 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.023 3.977 25 C -0.089 4.089 26 C -0.005 4.005 27 N -0.028 5.028 28 O 0.044 5.956 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.198 0.802 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.047 0.953 46 H 0.104 0.896 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -27.299 -1.427 0.441 27.339 hybrid contribution 0.472 0.610 1.427 1.622 sum -26.826 -0.818 1.868 26.903 Atomic orbital electron populations 1.20380 0.83351 1.04966 1.04426 1.24513 0.96582 0.85430 1.03187 1.22436 0.89630 1.01599 1.07071 1.23409 0.96530 0.90155 1.07658 1.16439 0.80648 0.85825 0.77479 1.90813 1.86246 1.12226 1.50697 1.48255 1.05543 1.08450 1.71250 1.22156 0.97486 0.79473 1.02478 1.22733 0.92254 0.97640 1.03529 1.22747 0.90121 0.94311 0.96914 0.93049 1.62029 0.99396 1.03563 1.59577 1.22915 0.96492 0.92260 0.97576 1.20872 0.88674 0.88182 0.97094 1.44123 1.14047 1.00013 1.73671 1.19208 0.86931 1.07064 1.24861 0.91624 1.25024 0.97432 0.99955 0.97360 1.70028 1.34692 1.20282 1.29810 0.86279 0.82614 0.77762 0.80052 1.21534 1.21748 1.20482 1.20963 0.88470 0.91483 0.96825 1.22688 0.98423 0.89889 0.97852 1.22330 0.79303 0.96249 1.02621 1.74291 0.96956 1.15563 1.16031 1.84795 1.11234 1.33522 1.66047 0.89110 0.89530 0.88738 0.80204 0.91001 0.90736 0.88988 0.89904 0.95617 0.91837 0.95516 0.89252 0.93627 0.95600 0.92553 0.91838 0.95251 0.89597 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.17 10.45 36.01 0.38 0.20 16 2 C -0.03 -0.24 7.47 -35.35 -0.26 -0.50 16 3 C -0.18 -1.67 10.92 -39.08 -0.43 -2.09 16 4 C -0.02 -0.22 7.03 -82.53 -0.58 -0.80 16 5 C 0.61 8.74 7.88 -12.11 -0.10 8.64 16 6 O -0.52 -8.83 17.21 5.37 0.09 -8.74 16 7 N -0.60 -8.09 3.33 -171.46 -0.57 -8.66 16 8 C 0.11 1.23 5.55 -3.07 -0.02 1.22 16 9 C -0.12 -1.48 5.35 -24.90 -0.13 -1.61 16 10 C 0.07 0.97 2.71 -65.56 -0.18 0.79 16 11 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 12 N -0.52 -8.92 4.53 -223.78 -1.01 -9.93 16 13 C 0.04 0.69 5.48 -3.70 -0.02 0.67 16 14 C 0.18 4.23 5.42 -3.60 -0.02 4.21 16 15 N -0.60 -15.01 3.04 -172.02 -0.52 -15.53 16 16 C -0.25 -6.91 9.63 -15.06 -0.15 -7.05 16 17 H 0.07 1.78 7.89 -52.48 -0.41 1.37 16 18 C 0.00 0.02 4.93 -17.43 -0.09 -0.07 16 19 N -0.90 -26.16 11.15 55.49 0.62 -25.54 16 20 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.15 3.17 6.69 -3.61 -0.02 3.15 16 25 C 0.04 0.73 5.48 -3.70 -0.02 0.71 16 26 C 0.12 1.62 5.32 -2.53 -0.01 1.61 16 27 N -0.33 -3.65 9.73 33.29 0.32 -3.33 16 28 O 0.12 1.08 11.18 17.23 0.19 1.27 16 29 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 30 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.18 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.07 0.80 7.71 -51.93 -0.40 0.40 16 34 H 0.07 0.83 7.77 -51.93 -0.40 0.43 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.08 0.90 7.93 -51.93 -0.41 0.49 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 1.06 6.87 -51.93 -0.36 0.70 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 2.36 6.11 -51.93 -0.32 2.04 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 44 H 0.06 0.99 6.79 -51.93 -0.35 0.64 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 47 H 0.08 1.13 7.74 -51.93 -0.40 0.73 16 LS Contribution 375.93 15.07 5.67 5.67 Total: -1.00 -32.49 375.93 -9.15 -41.64 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -7.26 Total: -2.62 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -1.65 Total: 9.07 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: -1.16 Total: -62.99 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.28 Total: -7.46 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.49 -9.15 -41.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051977858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.161 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds