Wall clock time and date at job start Tue Mar 31 2020 19:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35313 * 126.66855 * 2 1 4 4 C 1.42269 * 103.92383 * 180.02562 * 3 2 1 5 5 C 1.48328 * 126.93863 * 179.97438 * 4 3 2 6 6 O 1.21496 * 120.00083 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99959 * 180.27665 * 5 4 3 8 8 C 1.47022 * 125.64831 * 359.41722 * 7 5 4 9 9 C 1.54319 * 107.27307 * 180.96769 * 8 7 5 10 10 C 1.55155 * 102.86405 * 22.52846 * 9 8 7 11 11 H 1.08999 * 111.03680 * 82.38969 * 10 9 8 12 12 N 1.46904 * 110.99934 * 206.22712 * 10 9 8 13 13 C 1.46900 * 111.00204 * 297.94960 * 12 10 9 14 14 C 1.53231 * 109.34037 * 172.74821 * 13 12 10 15 15 N 1.47087 * 108.52070 * 53.83014 * 14 13 12 16 16 C 1.36934 * 120.87705 * 128.83765 * 15 14 13 17 17 H 1.08008 * 119.99603 * 206.62592 * 16 15 14 18 18 C 1.38809 * 120.00509 * 26.62674 * 16 15 14 19 19 N 1.31620 * 119.99943 * 17.03426 * 18 16 15 20 20 Si 1.86803 * 120.00176 * 197.04108 * 18 16 15 21 21 H 1.48497 * 109.47356 * 89.99506 * 20 18 16 22 22 H 1.48501 * 109.47023 * 210.00042 * 20 18 16 23 23 H 1.48497 * 109.47023 * 329.99526 * 20 18 16 24 24 C 1.47073 * 118.23676 * 308.81669 * 15 14 13 25 25 C 1.46903 * 110.99711 * 173.64930 * 12 10 9 26 26 C 1.47423 * 125.64828 * 179.72358 * 7 5 4 27 27 N 1.30979 * 106.12223 * 0.23045 * 4 3 2 28 28 O 1.20904 * 111.44356 * 359.59420 * 27 4 3 29 29 H 1.09003 * 109.46991 * 89.99493 * 1 2 3 30 30 H 1.08993 * 109.47415 * 209.99669 * 1 2 3 31 31 H 1.09001 * 109.46987 * 330.00248 * 1 2 3 32 32 H 1.08010 * 128.03555 * 0.02623 * 3 2 1 33 33 H 1.08994 * 109.88063 * 300.51416 * 8 7 5 34 34 H 1.08997 * 109.87948 * 61.67800 * 8 7 5 35 35 H 1.09004 * 110.92456 * 264.10796 * 9 8 7 36 36 H 1.09007 * 110.73989 * 140.85670 * 9 8 7 37 37 H 1.09003 * 109.49330 * 292.71235 * 13 12 10 38 38 H 1.08995 * 109.49295 * 52.78699 * 13 12 10 39 39 H 1.09003 * 109.63080 * 294.12503 * 14 13 12 40 40 H 1.08995 * 109.79208 * 173.63295 * 14 13 12 41 41 H 0.97003 * 119.99878 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.62995 * 291.47308 * 24 15 14 43 43 H 1.09005 * 109.78947 * 170.99137 * 24 15 14 44 44 H 1.09005 * 109.49265 * 307.21455 * 25 12 10 45 45 H 1.09004 * 109.49112 * 67.29027 * 25 12 10 46 46 H 1.08994 * 110.37463 * 274.67599 * 26 7 5 47 47 H 1.09004 * 110.36892 * 36.88767 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0854 0.0000 4 6 3.6271 0.5353 -0.0006 5 6 4.9076 1.2840 -0.0014 6 8 4.9009 2.4990 -0.0011 7 7 6.0785 0.6166 -0.0076 8 6 6.2313 -0.8456 -0.0018 9 6 7.7445 -1.1481 0.0125 10 6 8.3520 0.1560 0.5934 11 1 8.2978 0.1618 1.6820 12 7 9.7360 0.3410 0.1368 13 6 10.5950 -0.7560 0.6023 14 6 11.9796 -0.6242 -0.0408 15 7 12.4941 0.7267 0.2306 16 6 13.7434 0.9095 0.7607 17 1 13.9591 1.7936 1.3424 18 6 14.7326 -0.0413 0.5505 19 7 14.5964 -0.9316 -0.4093 20 14 16.2571 -0.0576 1.6299 21 1 16.0191 -0.9273 2.8097 22 1 17.4085 -0.5820 0.8524 23 1 16.5557 1.3239 2.0855 24 6 11.6315 1.8759 -0.0829 25 6 10.2606 1.6457 0.5618 26 6 7.4181 1.2319 -0.0149 27 7 3.4761 -0.7657 -0.0060 28 8 2.3073 -1.0750 -0.0006 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 2.0301 2.1272 0.0004 33 1 5.7593 -1.2641 0.8871 34 1 5.7789 -1.2691 -0.8985 35 1 8.1146 -1.3300 -0.9965 36 1 7.9623 -1.9971 0.6605 37 1 10.6915 -0.7073 1.6870 38 1 10.1516 -1.7105 0.3188 39 1 11.8993 -0.7760 -1.1172 40 1 12.6560 -1.3658 0.3841 41 1 15.2875 -1.5963 -0.5560 42 1 11.5177 1.9644 -1.1634 43 1 12.0744 2.7891 0.3146 44 1 9.5746 2.4329 0.2490 45 1 10.3617 1.6610 1.6471 46 1 7.7227 1.4658 -1.0349 47 1 7.4251 2.1331 0.5984 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051977858.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:49 Heat of formation + Delta-G solvation = 53.074282 kcal Electronic energy + Delta-G solvation = -28872.820906 eV Core-core repulsion = 24866.387307 eV Total energy + Delta-G solvation = -4006.433598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.17046 -41.38141 -39.89903 -38.24960 -35.92881 -35.20101 -34.37785 -33.38161 -31.87348 -31.64890 -29.88400 -28.69878 -27.99487 -26.11488 -24.79281 -24.52873 -23.88762 -22.93951 -21.69707 -20.84572 -20.32148 -18.97121 -18.82747 -18.35616 -18.13579 -17.62981 -16.87827 -16.73585 -16.11317 -15.76749 -15.57841 -15.30733 -15.24074 -14.99382 -14.96451 -14.68465 -14.47824 -14.06622 -13.99064 -13.93133 -13.76044 -13.42187 -13.28072 -13.00894 -12.75418 -12.63107 -12.57120 -12.37744 -12.17410 -12.03836 -11.96931 -11.85837 -11.62988 -11.59549 -11.47746 -11.36841 -10.59281 -10.40399 -9.95843 -9.36847 -8.69583 -7.88403 -5.32919 -0.02041 0.63569 1.46212 1.46895 1.47709 1.56374 1.90153 2.04330 2.49951 2.68419 2.89718 3.25531 3.26794 3.52575 3.55034 3.67405 3.90487 3.97893 4.03742 4.13104 4.18626 4.29134 4.31599 4.33581 4.48434 4.55283 4.59109 4.66074 4.69877 4.78525 4.79316 4.79970 4.85531 4.86958 4.90878 4.96607 5.05534 5.14219 5.18189 5.26110 5.36196 5.60681 5.69311 6.06390 6.14506 6.18568 6.36813 6.64518 6.99961 7.12936 7.83062 8.37099 9.18342 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.038369 B = 0.002097 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.581297 B =13347.130038 C =13820.607200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.011 4.011 3 C -0.202 4.202 4 C -0.045 4.045 5 C 0.606 3.394 6 O -0.559 6.559 7 N -0.603 5.603 8 C 0.115 3.885 9 C -0.116 4.116 10 C 0.074 3.926 11 H 0.055 0.945 12 N -0.526 5.526 13 C 0.054 3.946 14 C 0.185 3.815 15 N -0.614 5.614 16 C -0.264 4.264 17 H 0.066 0.934 18 C -0.051 4.051 19 N -0.934 5.934 20 Si 0.968 3.032 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.270 1.270 24 C 0.145 3.855 25 C 0.053 3.947 26 C 0.121 3.879 27 N -0.340 5.340 28 O 0.124 5.876 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.191 0.809 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.020 0.980 38 H 0.089 0.911 39 H 0.000 1.000 40 H 0.059 0.941 41 H 0.251 0.749 42 H 0.017 0.983 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.025 0.975 46 H 0.079 0.921 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.937 -1.485 1.871 31.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.074 4.074 3 C -0.225 4.225 4 C -0.203 4.203 5 C 0.394 3.606 6 O -0.437 6.437 7 N -0.336 5.336 8 C -0.008 4.008 9 C -0.154 4.154 10 C -0.036 4.036 11 H 0.073 0.927 12 N -0.251 5.251 13 C -0.075 4.075 14 C 0.059 3.941 15 N -0.338 5.338 16 C -0.394 4.394 17 H 0.084 0.916 18 C -0.246 4.246 19 N -0.580 5.580 20 Si 0.796 3.204 21 H -0.211 1.211 22 H -0.221 1.221 23 H -0.195 1.195 24 C 0.020 3.980 25 C -0.076 4.076 26 C -0.001 4.001 27 N -0.041 5.041 28 O 0.047 5.953 29 H 0.126 0.874 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.208 0.792 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.038 0.962 38 H 0.108 0.892 39 H 0.018 0.982 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.035 0.965 43 H 0.078 0.922 44 H 0.107 0.893 45 H 0.043 0.957 46 H 0.097 0.903 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -29.939 -1.899 1.306 30.028 hybrid contribution 1.169 0.775 1.103 1.784 sum -28.771 -1.124 2.409 28.893 Atomic orbital electron populations 1.20680 0.79775 1.06626 1.05993 1.25242 0.98067 0.83860 1.00197 1.22667 0.88782 1.02832 1.08216 1.23295 0.96420 0.90817 1.09732 1.16789 0.81480 0.85662 0.76690 1.90778 1.86889 1.13674 1.52380 1.48331 1.05199 1.09246 1.70849 1.22170 0.97137 0.78305 1.03142 1.22725 0.92155 0.97008 1.03520 1.22711 0.88023 0.95737 0.97106 0.92729 1.61930 1.00633 1.02670 1.59860 1.22581 0.94206 0.94120 0.96559 1.20652 0.90850 0.87062 0.95570 1.44408 1.14086 1.01476 1.73850 1.19520 0.88052 1.07070 1.24729 0.91634 1.25778 1.00363 0.99884 0.98580 1.70182 1.35550 1.20965 1.31325 0.85253 0.78929 0.77990 0.78180 1.21144 1.22088 1.19521 1.21090 0.89856 0.90510 0.96585 1.22498 0.96860 0.91138 0.97147 1.22195 0.79787 0.96080 1.02059 1.74269 0.98090 1.15139 1.16571 1.84764 1.10910 1.34244 1.65355 0.87358 0.87918 0.86987 0.79180 0.90212 0.90185 0.89351 0.88154 0.96154 0.89235 0.98152 0.92280 0.94021 0.96524 0.92231 0.89334 0.95658 0.90278 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.08 10.45 71.24 0.74 0.67 16 2 C -0.01 -0.12 7.47 25.01 0.19 0.07 16 3 C -0.20 -3.36 10.92 22.60 0.25 -3.12 16 4 C -0.05 -1.05 7.03 42.96 0.30 -0.75 16 5 C 0.61 17.23 7.88 86.93 0.68 17.91 16 6 O -0.56 -19.01 17.21 -3.70 -0.06 -19.08 16 7 N -0.60 -15.74 3.33 -814.68 -2.71 -18.45 16 8 C 0.11 2.45 5.55 86.73 0.48 2.93 16 9 C -0.12 -2.53 5.35 31.78 0.17 -2.36 16 10 C 0.07 1.95 2.71 46.31 0.13 2.08 16 11 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 12 N -0.53 -17.49 4.53 -861.91 -3.90 -21.39 16 13 C 0.05 2.01 5.48 86.38 0.47 2.49 16 14 C 0.18 8.98 5.42 86.34 0.47 9.45 16 15 N -0.61 -31.53 3.04 -698.14 -2.12 -33.65 16 16 C -0.26 -14.72 9.63 84.03 0.81 -13.91 16 17 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 18 C -0.05 -2.85 4.93 84.86 0.42 -2.43 16 19 N -0.93 -55.51 11.15 21.65 0.24 -55.27 16 20 Si 0.97 45.20 29.59 68.60 2.03 47.23 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 22 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 C 0.15 6.22 6.69 86.35 0.58 6.79 16 25 C 0.05 1.84 5.48 86.38 0.47 2.31 16 26 C 0.12 3.26 5.32 86.86 0.46 3.72 16 27 N -0.34 -7.13 9.73 -49.52 -0.48 -7.61 16 28 O 0.12 2.00 11.18 71.84 0.80 2.80 16 29 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.10 -0.15 8.14 -2.39 -0.02 -0.16 16 31 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 32 H 0.19 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.08 1.61 7.71 -2.39 -0.02 1.60 16 34 H 0.08 1.66 7.77 -2.39 -0.02 1.64 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.10 1.88 7.93 -2.38 -0.02 1.86 16 37 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 2.84 6.87 -2.39 -0.02 2.83 16 39 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.06 3.22 6.11 -2.39 -0.01 3.20 16 41 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 42 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.06 2.46 7.96 -2.38 -0.02 2.44 16 44 H 0.09 2.65 6.79 -2.38 -0.02 2.63 16 45 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 46 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.07 2.08 7.74 -2.38 -0.02 2.06 16 Total: -1.00 -72.23 375.93 1.39 -70.84 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 0.97 Total: 8.74 kcal Atomic # 6 Polarization: 19.23 SS G_CDS: 6.62 Total: 25.86 kcal Atomic # 7 Polarization: -127.41 SS G_CDS: -8.97 Total: -136.38 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.74 Total: -16.28 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -72.23 1.39 -70.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051977858.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.914 kcal (2) G-P(sol) polarization free energy of solvation -72.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds