Wall clock time and date at job start Tue Mar 31 2020 19:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41263 * 126.70505 * 2 1 4 4 C 1.36823 * 103.84325 * 180.13770 * 3 2 1 5 5 C 1.47518 * 126.93929 * 179.87534 * 4 3 2 6 6 O 1.21580 * 119.99911 * 359.71004 * 5 4 3 7 7 N 1.34775 * 120.00014 * 179.43483 * 5 4 3 8 8 C 1.47030 * 125.64767 * 359.96695 * 7 5 4 9 9 C 1.54328 * 107.26506 * 178.84881 * 8 7 5 10 10 C 1.55156 * 103.02361 * 338.14057 * 9 8 7 11 11 H 1.09001 * 111.03796 * 277.21842 * 10 9 8 12 12 N 1.46899 * 111.00689 * 153.37984 * 10 9 8 13 13 C 1.46891 * 111.00409 * 184.38270 * 12 10 9 14 14 C 1.53235 * 109.34240 * 172.74346 * 13 12 10 15 15 N 1.47085 * 108.51806 * 53.83508 * 14 13 12 16 16 C 1.36938 * 120.88172 * 128.79718 * 15 14 13 17 17 H 1.07998 * 119.99781 * 207.05712 * 16 15 14 18 18 C 1.38811 * 120.00344 * 27.04728 * 16 15 14 19 19 N 1.31617 * 119.99916 * 17.48030 * 18 16 15 20 20 Si 1.86797 * 120.00259 * 197.47388 * 18 16 15 21 21 H 1.48492 * 109.47180 * 84.91229 * 20 18 16 22 22 H 1.48498 * 109.47305 * 204.91719 * 20 18 16 23 23 H 1.48506 * 109.47087 * 324.91542 * 20 18 16 24 24 C 1.47073 * 118.23670 * 308.81057 * 15 14 13 25 25 C 1.46898 * 110.99758 * 60.07954 * 12 10 9 26 26 C 1.47417 * 125.65195 * 180.27620 * 7 5 4 27 27 O 1.34634 * 106.11673 * 359.61316 * 4 3 2 28 28 N 1.20887 * 111.46927 * 0.26574 * 27 4 3 29 29 H 1.08998 * 109.47017 * 270.27825 * 1 2 3 30 30 H 1.09000 * 109.47062 * 30.28178 * 1 2 3 31 31 H 1.09002 * 109.47020 * 150.28109 * 1 2 3 32 32 H 1.08000 * 128.07557 * 0.02562 * 3 2 1 33 33 H 1.08996 * 109.88297 * 298.39996 * 8 7 5 34 34 H 1.09002 * 109.87780 * 59.56128 * 8 7 5 35 35 H 1.08999 * 110.85180 * 219.67070 * 9 8 7 36 36 H 1.09001 * 110.51575 * 96.45317 * 9 8 7 37 37 H 1.08996 * 109.49332 * 292.70710 * 13 12 10 38 38 H 1.09000 * 109.49191 * 52.78711 * 13 12 10 39 39 H 1.08991 * 109.63464 * 294.12328 * 14 13 12 40 40 H 1.09001 * 109.62898 * 173.53706 * 14 13 12 41 41 H 0.96994 * 120.00339 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.62963 * 291.47993 * 24 15 14 43 43 H 1.08997 * 109.63176 * 170.89437 * 24 15 14 44 44 H 1.08996 * 109.49771 * 307.21151 * 25 12 10 45 45 H 1.08995 * 109.49605 * 67.26938 * 25 12 10 46 46 H 1.09006 * 110.36539 * 322.92963 * 26 7 5 47 47 H 1.08997 * 110.37137 * 85.14399 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6010 -0.0032 5 6 4.8870 1.3430 -0.0071 6 8 4.8828 2.5588 -0.0132 7 7 6.0566 0.6732 0.0015 8 6 6.2064 -0.7893 0.0158 9 6 7.7188 -1.0951 -0.0080 10 6 8.3290 0.2041 -0.5971 11 1 8.2746 0.2033 -1.6858 12 7 9.7134 0.3891 -0.1421 13 6 10.2563 1.6696 -0.6147 14 6 11.6275 1.9072 0.0267 15 7 12.4767 0.7359 -0.2386 16 6 13.7299 0.8824 -0.7707 17 1 14.1655 0.0846 -1.3539 18 6 14.4404 2.0563 -0.5606 19 7 14.0858 2.8760 0.4061 20 14 15.8997 2.4725 -1.6498 21 1 15.4207 3.1485 -2.8822 22 1 16.8229 3.3756 -0.9168 23 1 16.6157 1.2242 -2.0164 24 6 11.9439 -0.5968 0.0824 25 6 10.5601 -0.7358 -0.5611 26 6 7.3975 1.2857 0.0046 27 8 3.4540 -0.7360 0.0039 28 7 2.2848 -1.0433 0.0055 29 1 -0.3633 0.0050 1.0276 30 1 -0.3633 0.8874 -0.5182 31 1 -0.3633 -0.8925 -0.5095 32 1 2.0678 2.1747 0.0004 33 1 5.7574 -1.1991 0.9206 34 1 5.7292 -1.2194 -0.8648 35 1 7.9322 -1.9480 -0.6523 36 1 8.0889 -1.2715 1.0020 37 1 10.3619 1.6418 -1.6992 38 1 9.5793 2.4769 -0.3354 39 1 11.5109 2.0388 1.1023 40 1 12.0851 2.7967 -0.4063 41 1 14.5824 3.6961 0.5532 42 1 11.8575 -0.7060 1.1635 43 1 12.6105 -1.3628 -0.3137 44 1 10.1035 -1.6730 -0.2429 45 1 10.6611 -0.7305 -1.6464 46 1 7.4066 2.1820 -0.6157 47 1 7.7020 1.5270 1.0230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051981465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:35 Heat of formation + Delta-G solvation = 51.945937 kcal Electronic energy + Delta-G solvation = -28937.913420 eV Core-core repulsion = 24931.430893 eV Total energy + Delta-G solvation = -4006.482527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.09883 -41.33872 -39.87752 -38.24537 -36.05228 -35.74628 -33.62920 -33.03866 -32.10193 -31.23385 -29.93379 -29.57562 -27.86656 -25.80554 -24.58411 -24.48569 -23.97572 -22.83428 -21.64092 -20.79498 -20.60605 -18.96319 -18.90444 -18.77564 -17.70767 -17.42952 -16.87538 -16.73552 -16.08798 -15.75549 -15.51460 -15.29067 -15.20722 -14.99167 -14.80893 -14.61907 -14.25345 -14.22503 -14.03400 -14.00379 -13.66308 -13.61308 -13.17717 -13.10729 -12.69350 -12.57469 -12.50119 -12.42781 -12.21864 -12.01353 -11.89975 -11.76650 -11.62283 -11.41720 -11.34311 -11.15126 -10.88311 -10.57558 -9.90056 -9.31145 -8.66653 -7.86872 -5.31206 -0.36211 0.96437 1.30530 1.46879 1.48467 1.56654 1.76115 1.92196 2.51350 2.93800 3.05167 3.15585 3.28433 3.48719 3.61579 3.71231 3.79764 3.93405 4.06522 4.19431 4.27387 4.31560 4.35943 4.39128 4.54661 4.59092 4.64766 4.69131 4.71766 4.72465 4.77393 4.80340 4.86533 4.91544 4.93025 5.05180 5.09209 5.18699 5.22139 5.24654 5.39740 5.63050 5.69432 6.09058 6.16855 6.25561 6.38642 6.60784 6.99049 7.14461 7.85846 8.39602 9.19863 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.034467 B = 0.002150 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.171419 B =13020.749418 C =13574.850292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.015 3.985 3 C -0.147 4.147 4 C -0.089 4.089 5 C 0.616 3.384 6 O -0.549 6.549 7 N -0.601 5.601 8 C 0.099 3.901 9 C -0.113 4.113 10 C 0.072 3.928 11 H 0.057 0.943 12 N -0.526 5.526 13 C 0.050 3.950 14 C 0.187 3.813 15 N -0.614 5.614 16 C -0.262 4.262 17 H 0.068 0.932 18 C -0.053 4.053 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.286 1.286 22 H -0.296 1.296 23 H -0.268 1.268 24 C 0.143 3.857 25 C 0.057 3.943 26 C 0.119 3.881 27 O 0.115 5.885 28 N -0.367 5.367 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.200 0.800 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.020 0.980 38 H 0.076 0.924 39 H 0.000 1.000 40 H 0.053 0.947 41 H 0.250 0.750 42 H 0.018 0.982 43 H 0.061 0.939 44 H 0.105 0.895 45 H 0.025 0.975 46 H 0.069 0.931 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.779 -9.239 -1.800 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.143 4.143 3 C -0.169 4.169 4 C -0.154 4.154 5 C 0.403 3.597 6 O -0.428 6.428 7 N -0.333 5.333 8 C -0.023 4.023 9 C -0.151 4.151 10 C -0.038 4.038 11 H 0.075 0.925 12 N -0.251 5.251 13 C -0.079 4.079 14 C 0.060 3.940 15 N -0.339 5.339 16 C -0.392 4.392 17 H 0.086 0.914 18 C -0.248 4.248 19 N -0.581 5.581 20 Si 0.795 3.205 21 H -0.213 1.213 22 H -0.223 1.223 23 H -0.193 1.193 24 C 0.017 3.983 25 C -0.071 4.071 26 C -0.003 4.003 27 O 0.044 5.956 28 N -0.071 5.071 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.102 0.898 32 H 0.217 0.783 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.039 0.961 38 H 0.095 0.905 39 H 0.018 0.982 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.036 0.964 43 H 0.080 0.920 44 H 0.123 0.877 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -26.970 -9.752 -1.242 28.706 hybrid contribution 1.241 1.579 -1.113 2.296 sum -25.729 -8.173 -2.355 27.099 Atomic orbital electron populations 1.20420 0.82587 1.05426 1.05011 1.24235 1.00961 0.87392 1.01674 1.23204 0.89391 1.02811 1.01517 1.23926 0.96729 0.84448 1.10330 1.16265 0.80800 0.85356 0.77284 1.90872 1.86212 1.13119 1.52629 1.48337 1.05014 1.09525 1.70433 1.22395 0.97981 0.77861 1.04015 1.22729 0.91865 0.96717 1.03738 1.22735 0.87832 0.95912 0.97281 0.92549 1.61906 1.00899 1.02452 1.59869 1.22579 0.97124 0.91636 0.96561 1.20577 0.87482 0.90430 0.95462 1.44405 1.13831 1.01857 1.73758 1.19517 0.93031 1.02099 1.24531 0.91391 1.25794 1.00813 0.99632 0.98549 1.70185 1.43376 1.13523 1.31060 0.85292 0.79090 0.77886 0.78231 1.21262 1.22272 1.19314 1.21164 0.93280 0.87133 0.96698 1.22488 0.93615 0.93932 0.97112 1.22206 0.79798 0.96239 1.02096 1.85024 1.21461 1.21719 1.67405 1.73731 0.89616 1.25224 1.18486 0.88456 0.87612 0.89771 0.78333 0.89172 0.89274 0.87405 0.88975 0.96134 0.90539 0.98228 0.92909 0.94141 0.96408 0.92035 0.87714 0.95704 0.91230 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.47 71.24 0.75 0.20 16 2 C 0.01 0.23 7.31 43.55 0.32 0.55 16 3 C -0.15 -2.46 10.91 22.68 0.25 -2.21 16 4 C -0.09 -1.81 7.08 24.39 0.17 -1.64 16 5 C 0.62 15.29 7.85 86.69 0.68 15.97 16 6 O -0.55 -17.20 17.17 -3.97 -0.07 -17.27 16 7 N -0.60 -13.37 3.33 -815.56 -2.71 -16.08 16 8 C 0.10 1.58 5.58 86.73 0.48 2.07 16 9 C -0.11 -1.86 5.24 31.78 0.17 -1.69 16 10 C 0.07 1.69 2.72 46.31 0.13 1.81 16 11 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 12 N -0.53 -16.34 4.53 -861.94 -3.90 -20.24 16 13 C 0.05 1.89 5.49 86.38 0.47 2.36 16 14 C 0.19 9.10 5.42 86.35 0.47 9.57 16 15 N -0.61 -30.85 3.03 -698.14 -2.12 -32.97 16 16 C -0.26 -14.38 9.62 84.03 0.81 -13.57 16 17 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 18 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 19 N -0.94 -55.90 11.22 21.65 0.24 -55.65 16 20 Si 0.97 45.07 29.59 68.60 2.03 47.10 16 21 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 22 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 C 0.14 5.71 6.69 86.35 0.58 6.29 16 25 C 0.06 1.76 5.47 86.39 0.47 2.23 16 26 C 0.12 2.98 5.41 86.86 0.47 3.45 16 27 O 0.11 2.23 9.02 65.90 0.59 2.82 16 28 N -0.37 -7.12 12.04 -48.85 -0.59 -7.71 16 29 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.20 2.56 8.06 -2.91 -0.02 2.53 16 33 H 0.09 1.27 7.84 -2.39 -0.02 1.25 16 34 H 0.09 1.22 7.72 -2.39 -0.02 1.20 16 35 H 0.11 1.34 7.94 -2.39 -0.02 1.32 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 2.63 6.87 -2.39 -0.02 2.61 16 39 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.05 2.92 6.17 -2.39 -0.01 2.90 16 41 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 42 H 0.02 0.74 8.14 -2.38 -0.02 0.73 16 43 H 0.06 2.35 7.95 -2.39 -0.02 2.33 16 44 H 0.10 2.41 6.80 -2.39 -0.02 2.40 16 45 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.07 1.91 7.74 -2.38 -0.02 1.89 16 47 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -70.73 376.14 1.08 -69.66 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 0.97 Total: 7.49 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 6.63 Total: 22.87 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -9.08 Total: -132.66 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.53 Total: -14.45 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -70.73 1.08 -69.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051981465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.605 kcal (2) G-P(sol) polarization free energy of solvation -70.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds