Wall clock time and date at job start Tue Mar 31 2020 19:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30015 * 127.33768 * 2 1 4 4 O 1.20658 * 112.30374 * 179.83416 * 3 2 1 5 5 C 1.33495 * 113.15420 * 0.45451 * 4 3 2 6 6 C 1.37367 * 106.34297 * 359.73317 * 5 4 3 7 7 C 1.47392 * 128.56539 * 179.97438 * 6 5 4 8 8 O 1.21606 * 120.00173 * 180.02562 * 7 6 5 9 9 N 1.34782 * 119.99939 * 0.04128 * 7 6 5 10 10 C 1.47016 * 125.65011 * 359.69066 * 9 7 6 11 11 C 1.54313 * 107.27859 * 180.96557 * 10 9 7 12 12 C 1.55164 * 102.86150 * 22.52962 * 11 10 9 13 13 H 1.09006 * 111.03566 * 82.38619 * 12 11 10 14 14 N 1.46896 * 111.00553 * 206.22472 * 12 11 10 15 15 C 1.46892 * 111.00022 * 297.95306 * 14 12 11 16 16 C 1.53243 * 109.34000 * 172.74487 * 15 14 12 17 17 N 1.47078 * 108.51981 * 53.82980 * 16 15 14 18 18 C 1.36936 * 120.88175 * 128.79384 * 17 16 15 19 19 H 1.08004 * 120.00200 * 206.59538 * 18 17 16 20 20 C 1.38809 * 120.00246 * 26.60240 * 18 17 16 21 21 N 1.31620 * 119.99929 * 16.99991 * 20 18 17 22 22 Si 1.86799 * 120.00341 * 196.99809 * 20 18 17 23 23 H 1.48504 * 109.46808 * 89.99825 * 22 20 18 24 24 H 1.48500 * 109.47251 * 209.99795 * 22 20 18 25 25 H 1.48498 * 109.47013 * 330.00052 * 22 20 18 26 26 C 1.47081 * 118.23675 * 308.81234 * 17 16 15 27 27 C 1.46902 * 111.00098 * 173.64807 * 14 12 11 28 28 C 1.47424 * 125.64676 * 180.02562 * 9 7 6 29 29 H 1.08998 * 109.47118 * 269.68662 * 1 2 3 30 30 H 1.08995 * 109.47166 * 149.68177 * 1 2 3 31 31 H 1.08998 * 109.46676 * 29.68274 * 1 2 3 32 32 H 1.07998 * 126.82892 * 179.74944 * 5 4 3 33 33 H 1.09001 * 109.88655 * 300.51700 * 10 9 7 34 34 H 1.08999 * 109.87985 * 61.68030 * 10 9 7 35 35 H 1.08997 * 110.92801 * 264.11793 * 11 10 9 36 36 H 1.08998 * 110.59068 * 140.78486 * 11 10 9 37 37 H 1.09004 * 109.49362 * 292.70142 * 15 14 12 38 38 H 1.08998 * 109.49599 * 52.78692 * 15 14 12 39 39 H 1.09000 * 109.62882 * 294.11807 * 16 15 14 40 40 H 1.09004 * 109.63122 * 173.53735 * 16 15 14 41 41 H 0.96996 * 120.00277 * 180.02562 * 21 20 18 42 42 H 1.08997 * 109.63241 * 291.47615 * 26 17 16 43 43 H 1.09001 * 109.62765 * 170.89157 * 26 17 16 44 44 H 1.08997 * 109.49033 * 307.21892 * 27 14 12 45 45 H 1.08996 * 109.48872 * 67.26495 * 27 14 12 46 46 H 1.09001 * 110.36646 * 274.67089 * 28 9 7 47 47 H 1.08997 * 110.36859 * 36.88345 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4609 0.7207 0.0032 5 6 3.6495 -0.6008 -0.0038 6 6 2.3991 -1.1697 -0.0064 7 6 2.0400 -2.5992 -0.0143 8 8 0.8705 -2.9323 -0.0162 9 7 3.0079 -3.5371 -0.0192 10 6 4.4546 -3.2755 -0.0239 11 6 5.1677 -4.6437 -0.0534 12 6 4.0844 -5.5851 -0.6432 13 1 4.0625 -5.5231 -1.7313 14 7 4.2938 -6.9704 -0.2017 15 6 5.5864 -7.4838 -0.6741 16 6 5.8473 -8.8570 -0.0458 17 7 4.6936 -9.7254 -0.3253 18 6 4.8662 -10.9699 -0.8697 19 1 4.0765 -11.4177 -1.4549 20 6 6.0560 -11.6562 -0.6695 21 7 6.8749 -11.2869 0.2926 22 14 6.4951 -13.1040 -1.7652 23 1 7.2611 -12.6198 -2.9417 24 1 7.3223 -14.0711 -0.9999 25 1 5.2511 -13.7718 -2.2252 26 6 3.3495 -9.2213 -0.0048 27 6 3.1870 -7.8339 -0.6347 28 6 2.7912 -4.9953 -0.0278 29 1 -0.3633 -0.0056 1.0276 30 1 -0.3633 -0.8871 -0.5187 31 1 -0.3632 0.8928 -0.5089 32 1 4.5967 -1.1195 -0.0065 33 1 4.7238 -2.6959 -0.9069 34 1 4.7360 -2.7325 0.8784 35 1 5.4467 -4.9591 0.9520 36 1 6.0417 -4.6065 -0.7036 37 1 5.5654 -7.5787 -1.7598 38 1 6.3795 -6.7947 -0.3840 39 1 5.9719 -8.7490 1.0316 40 1 6.7473 -9.2931 -0.4794 41 1 7.7065 -11.7662 0.4323 42 1 3.2339 -9.1484 1.0765 43 1 2.5981 -9.8982 -0.4114 44 1 2.2399 -7.3984 -0.3162 45 1 3.1991 -7.9233 -1.7209 46 1 2.6525 -5.3642 0.9885 47 1 1.9273 -5.2469 -0.6431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052072920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:39 Heat of formation + Delta-G solvation = 75.661284 kcal Electronic energy + Delta-G solvation = -29068.949963 eV Core-core repulsion = 25063.495811 eV Total energy + Delta-G solvation = -4005.454153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.27643 -40.38167 -38.56559 -36.93794 -34.81445 -34.34545 -32.70926 -31.62917 -30.51292 -30.17932 -29.12520 -28.51639 -26.31413 -25.09730 -23.50826 -22.96568 -22.15936 -21.55309 -20.54768 -20.15500 -19.20906 -18.09721 -17.77293 -17.18366 -17.12201 -16.34756 -15.99759 -15.12839 -14.81933 -14.49201 -14.32401 -14.16253 -14.07451 -13.60849 -13.54563 -13.49297 -13.43538 -13.23306 -12.95048 -12.85436 -12.72402 -12.38986 -11.92939 -11.65255 -11.36534 -11.30712 -11.11030 -11.02142 -10.78594 -10.48398 -10.38257 -10.33669 -10.26409 -10.13739 -10.08933 -9.78029 -9.65235 -8.97228 -8.54930 -7.98163 -6.71393 -5.81997 -3.23153 0.67349 1.43352 2.33118 2.83159 2.87052 3.35148 3.42434 3.43531 3.64803 3.90812 4.10107 4.14972 4.39310 4.47178 4.47687 4.55495 4.70906 4.95094 5.03773 5.13802 5.20719 5.22692 5.24500 5.35475 5.38379 5.39632 5.59329 5.68957 5.74815 5.79685 5.82621 5.84208 5.91591 6.07172 6.08642 6.16855 6.26836 6.46956 6.62595 6.87906 7.11383 7.18113 7.47475 7.55885 7.63025 7.77016 7.77514 7.84763 8.39571 9.17606 9.80665 10.38723 11.26880 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.034075 B = 0.002190 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.513980 B =12780.278768 C =13347.619714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.071 3.929 3 N -0.360 5.360 4 O 0.096 5.904 5 C -0.015 4.015 6 C -0.248 4.248 7 C 0.609 3.391 8 O -0.528 6.528 9 N -0.610 5.610 10 C 0.089 3.911 11 C -0.123 4.123 12 C 0.068 3.932 13 H 0.052 0.948 14 N -0.520 5.520 15 C 0.036 3.964 16 C 0.178 3.822 17 N -0.596 5.596 18 C -0.251 4.251 19 H 0.066 0.934 20 C 0.001 3.999 21 N -0.904 5.904 22 Si 0.903 3.097 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.149 3.851 27 C 0.041 3.959 28 C 0.119 3.881 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.231 0.769 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.026 0.974 38 H 0.063 0.937 39 H 0.027 0.973 40 H 0.089 0.911 41 H 0.254 0.746 42 H 0.027 0.973 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.029 0.971 46 H 0.085 0.915 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.501 21.956 -0.766 22.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.092 4.092 3 N -0.068 5.068 4 O 0.037 5.963 5 C -0.097 4.097 6 C -0.256 4.256 7 C 0.398 3.602 8 O -0.405 6.405 9 N -0.344 5.344 10 C -0.035 4.035 11 C -0.161 4.161 12 C -0.042 4.042 13 H 0.070 0.930 14 N -0.246 5.246 15 C -0.093 4.093 16 C 0.052 3.948 17 N -0.319 5.319 18 C -0.381 4.381 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.733 3.267 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.022 3.978 27 C -0.088 4.088 28 C -0.004 4.004 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.247 0.753 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.048 0.952 46 H 0.103 0.897 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.207 23.029 -0.206 23.612 hybrid contribution 0.466 -1.594 -1.424 2.187 sum -4.742 21.436 -1.630 22.014 Atomic orbital electron populations 1.20286 0.84747 1.04448 1.04051 1.24886 0.99029 0.86184 0.99119 1.73686 0.89277 1.23595 1.20249 1.84586 1.21561 1.23147 1.66998 1.27081 1.00792 0.83950 0.97845 1.22279 0.92900 0.95397 1.14995 1.16386 0.84440 0.82538 0.76847 1.90807 1.17600 1.81649 1.50437 1.48198 1.06198 1.07126 1.72845 1.22414 0.80351 0.99417 1.01279 1.22714 0.97707 0.91882 1.03773 1.22751 0.93871 0.90556 0.96984 0.93017 1.62026 1.03701 0.99208 1.59631 1.22926 0.89110 0.99712 0.97523 1.20872 0.91937 0.84851 0.97145 1.44128 1.00081 1.14670 1.73011 1.19205 1.01396 0.93013 1.24486 0.91613 1.25021 0.99349 0.98011 0.97363 1.70022 1.12501 1.42513 1.29783 0.86281 0.78213 0.82094 0.80140 1.21514 1.21736 1.20467 1.20973 0.88945 0.90985 0.96868 1.22684 0.92594 0.95743 0.97802 1.22290 0.98120 0.77398 1.02546 0.89648 0.88552 0.90361 0.75273 0.90999 0.90674 0.88715 0.89729 0.95608 0.91860 0.95501 0.89283 0.93608 0.95553 0.92536 0.91807 0.95240 0.89705 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.15 36.01 0.37 -0.32 16 2 C 0.07 0.75 7.58 -79.76 -0.60 0.15 16 3 N -0.36 -3.90 12.01 34.78 0.42 -3.48 16 4 O 0.10 0.86 11.06 18.65 0.21 1.07 16 5 C -0.01 -0.11 10.83 30.42 0.33 0.22 16 6 C -0.25 -2.55 6.41 -102.89 -0.66 -3.20 16 7 C 0.61 7.46 7.85 -12.53 -0.10 7.36 16 8 O -0.53 -8.09 15.95 5.27 0.08 -8.01 16 9 N -0.61 -6.50 3.33 -171.82 -0.57 -7.07 16 10 C 0.09 0.64 5.04 -3.07 -0.02 0.62 16 11 C -0.12 -1.11 5.35 -24.90 -0.13 -1.24 16 12 C 0.07 0.83 2.71 -65.57 -0.18 0.65 16 13 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 14 N -0.52 -8.18 4.53 -223.79 -1.01 -9.19 16 15 C 0.04 0.64 5.48 -3.70 -0.02 0.61 16 16 C 0.18 4.06 5.42 -3.60 -0.02 4.04 16 17 N -0.60 -14.56 3.04 -172.01 -0.52 -15.08 16 18 C -0.25 -6.76 9.63 -15.06 -0.15 -6.91 16 19 H 0.07 1.75 7.88 -52.48 -0.41 1.33 16 20 C 0.00 0.03 4.94 -17.43 -0.09 -0.06 16 21 N -0.90 -25.61 11.15 55.49 0.62 -24.99 16 22 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.15 3.05 6.69 -3.60 -0.02 3.02 16 27 C 0.04 0.69 5.48 -3.70 -0.02 0.67 16 28 C 0.12 1.43 5.32 -2.54 -0.01 1.41 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.10 0.93 7.11 -51.93 -0.37 0.56 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.23 0.75 4.83 -52.49 -0.25 0.50 16 33 H 0.07 0.37 6.97 -51.93 -0.36 0.01 16 34 H 0.08 0.39 7.09 -51.93 -0.37 0.02 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.67 7.94 -51.93 -0.41 0.25 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.96 6.87 -51.93 -0.36 0.60 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 2.27 6.12 -51.93 -0.32 1.95 16 41 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 1.12 7.95 -51.93 -0.41 0.71 16 44 H 0.06 0.93 6.79 -51.93 -0.35 0.58 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.08 1.02 7.74 -51.93 -0.40 0.62 16 LS Contribution 369.70 15.07 5.57 5.57 Total: -1.00 -32.25 369.70 -8.52 -40.77 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -6.96 Total: -2.89 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -1.32 Total: 7.03 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -1.07 Total: -59.82 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: 0.29 Total: -6.94 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.25 -8.52 -40.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052072920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.431 kcal (2) G-P(sol) polarization free energy of solvation -32.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds