Wall clock time and date at job start Tue Mar 31 2020 19:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30015 * 127.33768 * 2 1 4 4 O 1.20658 * 112.30374 * 179.83416 * 3 2 1 5 5 C 1.33495 * 113.15420 * 0.45451 * 4 3 2 6 6 C 1.37367 * 106.34297 * 359.73317 * 5 4 3 7 7 C 1.47392 * 128.56539 * 179.97438 * 6 5 4 8 8 O 1.21606 * 120.00173 * 180.02562 * 7 6 5 9 9 N 1.34782 * 119.99939 * 0.04128 * 7 6 5 10 10 C 1.47016 * 125.65011 * 359.69066 * 9 7 6 11 11 C 1.54313 * 107.27859 * 180.96557 * 10 9 7 12 12 C 1.55164 * 102.86150 * 22.52962 * 11 10 9 13 13 H 1.09006 * 111.03566 * 82.38619 * 12 11 10 14 14 N 1.46896 * 111.00553 * 206.22472 * 12 11 10 15 15 C 1.46892 * 111.00022 * 297.95306 * 14 12 11 16 16 C 1.53243 * 109.34000 * 172.74487 * 15 14 12 17 17 N 1.47078 * 108.51981 * 53.82980 * 16 15 14 18 18 C 1.36936 * 120.88175 * 128.79384 * 17 16 15 19 19 H 1.08004 * 120.00200 * 206.59538 * 18 17 16 20 20 C 1.38809 * 120.00246 * 26.60240 * 18 17 16 21 21 N 1.31620 * 119.99929 * 16.99991 * 20 18 17 22 22 Si 1.86799 * 120.00341 * 196.99809 * 20 18 17 23 23 H 1.48504 * 109.46808 * 89.99825 * 22 20 18 24 24 H 1.48500 * 109.47251 * 209.99795 * 22 20 18 25 25 H 1.48498 * 109.47013 * 330.00052 * 22 20 18 26 26 C 1.47081 * 118.23675 * 308.81234 * 17 16 15 27 27 C 1.46902 * 111.00098 * 173.64807 * 14 12 11 28 28 C 1.47424 * 125.64676 * 180.02562 * 9 7 6 29 29 H 1.08998 * 109.47118 * 269.68662 * 1 2 3 30 30 H 1.08995 * 109.47166 * 149.68177 * 1 2 3 31 31 H 1.08998 * 109.46676 * 29.68274 * 1 2 3 32 32 H 1.07998 * 126.82892 * 179.74944 * 5 4 3 33 33 H 1.09001 * 109.88655 * 300.51700 * 10 9 7 34 34 H 1.08999 * 109.87985 * 61.68030 * 10 9 7 35 35 H 1.08997 * 110.92801 * 264.11793 * 11 10 9 36 36 H 1.08998 * 110.59068 * 140.78486 * 11 10 9 37 37 H 1.09004 * 109.49362 * 292.70142 * 15 14 12 38 38 H 1.08998 * 109.49599 * 52.78692 * 15 14 12 39 39 H 1.09000 * 109.62882 * 294.11807 * 16 15 14 40 40 H 1.09004 * 109.63122 * 173.53735 * 16 15 14 41 41 H 0.96996 * 120.00277 * 180.02562 * 21 20 18 42 42 H 1.08997 * 109.63241 * 291.47615 * 26 17 16 43 43 H 1.09001 * 109.62765 * 170.89157 * 26 17 16 44 44 H 1.08997 * 109.49033 * 307.21892 * 27 14 12 45 45 H 1.08996 * 109.48872 * 67.26495 * 27 14 12 46 46 H 1.09001 * 110.36646 * 274.67089 * 28 9 7 47 47 H 1.08997 * 110.36859 * 36.88345 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4609 0.7207 0.0032 5 6 3.6495 -0.6008 -0.0038 6 6 2.3991 -1.1697 -0.0064 7 6 2.0400 -2.5992 -0.0143 8 8 0.8705 -2.9323 -0.0162 9 7 3.0079 -3.5371 -0.0192 10 6 4.4546 -3.2755 -0.0239 11 6 5.1677 -4.6437 -0.0534 12 6 4.0844 -5.5851 -0.6432 13 1 4.0625 -5.5231 -1.7313 14 7 4.2938 -6.9704 -0.2017 15 6 5.5864 -7.4838 -0.6741 16 6 5.8473 -8.8570 -0.0458 17 7 4.6936 -9.7254 -0.3253 18 6 4.8662 -10.9699 -0.8697 19 1 4.0765 -11.4177 -1.4549 20 6 6.0560 -11.6562 -0.6695 21 7 6.8749 -11.2869 0.2926 22 14 6.4951 -13.1040 -1.7652 23 1 7.2611 -12.6198 -2.9417 24 1 7.3223 -14.0711 -0.9999 25 1 5.2511 -13.7718 -2.2252 26 6 3.3495 -9.2213 -0.0048 27 6 3.1870 -7.8339 -0.6347 28 6 2.7912 -4.9953 -0.0278 29 1 -0.3633 -0.0056 1.0276 30 1 -0.3633 -0.8871 -0.5187 31 1 -0.3632 0.8928 -0.5089 32 1 4.5967 -1.1195 -0.0065 33 1 4.7238 -2.6959 -0.9069 34 1 4.7360 -2.7325 0.8784 35 1 5.4467 -4.9591 0.9520 36 1 6.0417 -4.6065 -0.7036 37 1 5.5654 -7.5787 -1.7598 38 1 6.3795 -6.7947 -0.3840 39 1 5.9719 -8.7490 1.0316 40 1 6.7473 -9.2931 -0.4794 41 1 7.7065 -11.7662 0.4323 42 1 3.2339 -9.1484 1.0765 43 1 2.5981 -9.8982 -0.4114 44 1 2.2399 -7.3984 -0.3162 45 1 3.1991 -7.9233 -1.7209 46 1 2.6525 -5.3642 0.9885 47 1 1.9273 -5.2469 -0.6431 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052072920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:38 Heat of formation + Delta-G solvation = 53.603890 kcal Electronic energy + Delta-G solvation = -29069.906444 eV Core-core repulsion = 25063.495811 eV Total energy + Delta-G solvation = -4006.410633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -46.00114 -41.28644 -39.79367 -38.14973 -35.89308 -35.53266 -33.74837 -33.03677 -31.82161 -31.51437 -29.94066 -29.52683 -27.83484 -26.12992 -24.70807 -24.52675 -23.34251 -22.29927 -21.57331 -20.99237 -20.78917 -18.85279 -18.78883 -18.53700 -17.89439 -17.57989 -16.93095 -16.74728 -16.06336 -15.65855 -15.53004 -15.28104 -15.23662 -15.15286 -14.88388 -14.60268 -14.28353 -14.22949 -13.95142 -13.85653 -13.63435 -13.49400 -13.25543 -12.97762 -12.67552 -12.52410 -12.52129 -12.34446 -12.14287 -12.00503 -11.87277 -11.80709 -11.43905 -11.39413 -11.25259 -11.00301 -10.83343 -10.57606 -9.80128 -9.30835 -8.67212 -7.87030 -5.31225 0.01363 0.68345 1.47385 1.48321 1.55302 1.57310 2.03178 2.18961 2.51257 2.91531 2.98399 3.25373 3.28128 3.35350 3.62303 3.70590 3.76829 3.81020 4.07654 4.20486 4.25835 4.33682 4.35689 4.39329 4.51192 4.56276 4.58305 4.59643 4.63388 4.70778 4.73096 4.74017 4.88619 4.90316 5.01947 5.03486 5.12689 5.14932 5.21016 5.26257 5.39606 5.62336 5.72936 6.13572 6.25155 6.33122 6.38825 6.92231 7.15049 7.16233 7.85342 8.38641 9.19488 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.034075 B = 0.002190 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.513980 B =12780.278768 C =13347.619714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.055 3.945 3 N -0.379 5.379 4 O 0.099 5.901 5 C 0.024 3.976 6 C -0.276 4.276 7 C 0.608 3.392 8 O -0.572 6.572 9 N -0.608 5.608 10 C 0.083 3.917 11 C -0.117 4.117 12 C 0.069 3.931 13 H 0.054 0.946 14 N -0.526 5.526 15 C 0.055 3.945 16 C 0.183 3.817 17 N -0.615 5.615 18 C -0.263 4.263 19 H 0.064 0.936 20 C -0.050 4.050 21 N -0.933 5.933 22 Si 0.967 3.033 23 H -0.284 1.284 24 H -0.295 1.295 25 H -0.272 1.272 26 C 0.145 3.855 27 C 0.054 3.946 28 C 0.123 3.877 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.274 0.726 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.019 0.981 38 H 0.094 0.906 39 H 0.001 0.999 40 H 0.058 0.942 41 H 0.251 0.749 42 H 0.017 0.983 43 H 0.056 0.944 44 H 0.087 0.913 45 H 0.023 0.977 46 H 0.074 0.926 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.371 23.993 -1.526 24.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 N -0.087 5.087 4 O 0.041 5.959 5 C -0.058 4.058 6 C -0.284 4.284 7 C 0.398 3.602 8 O -0.452 6.452 9 N -0.340 5.340 10 C -0.038 4.038 11 C -0.155 4.155 12 C -0.040 4.040 13 H 0.072 0.928 14 N -0.251 5.251 15 C -0.074 4.074 16 C 0.058 3.942 17 N -0.339 5.339 18 C -0.393 4.393 19 H 0.082 0.918 20 C -0.245 4.245 21 N -0.579 5.579 22 Si 0.795 3.205 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.197 1.197 26 C 0.019 3.981 27 C -0.075 4.075 28 C 0.000 4.000 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.289 0.711 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.037 0.963 38 H 0.113 0.887 39 H 0.019 0.981 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.035 0.965 43 H 0.074 0.926 44 H 0.105 0.895 45 H 0.042 0.958 46 H 0.092 0.908 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.072 25.103 -0.971 25.450 hybrid contribution 0.097 -2.225 -1.133 2.499 sum -3.975 22.878 -2.104 23.316 Atomic orbital electron populations 1.20284 0.84356 1.04393 1.04378 1.25189 0.99790 0.86599 0.99204 1.73694 0.89877 1.23944 1.21186 1.84568 1.20829 1.23991 1.66544 1.27735 1.01093 0.82927 0.94063 1.22122 0.94235 0.94222 1.17808 1.16630 0.84040 0.83396 0.76169 1.90782 1.19444 1.82387 1.52624 1.48203 1.07667 1.06109 1.72069 1.22733 0.77716 0.99055 1.04321 1.22731 0.97468 0.91705 1.03579 1.22763 0.95457 0.88551 0.97217 0.92795 1.61921 1.02428 1.00895 1.59884 1.22575 0.91097 0.97284 0.96410 1.20672 0.90544 0.87399 0.95617 1.44424 1.01825 1.14496 1.73186 1.19501 1.01472 0.94058 1.24295 0.91802 1.25750 0.99422 1.00724 0.98633 1.70173 1.12715 1.43774 1.31273 0.85279 0.77895 0.79032 0.78298 1.21063 1.22136 1.19666 1.21096 0.87214 0.93233 0.96562 1.22458 0.94163 0.93956 0.96960 1.22088 0.97635 0.78683 1.01570 0.89127 0.89847 0.89098 0.71094 0.87795 0.87684 0.89304 0.87648 0.96301 0.88748 0.98127 0.92416 0.94019 0.96536 0.92554 0.89520 0.95843 0.90805 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 10.15 71.24 0.72 -0.62 16 2 C 0.05 1.10 7.58 45.16 0.34 1.44 16 3 N -0.38 -7.49 12.01 -44.77 -0.54 -8.03 16 4 O 0.10 1.46 11.06 76.97 0.85 2.31 16 5 C 0.02 0.24 10.83 67.61 0.73 0.97 16 6 C -0.28 -5.04 6.41 -18.74 -0.12 -5.16 16 7 C 0.61 13.97 7.85 86.65 0.68 14.65 16 8 O -0.57 -17.63 15.95 -4.05 -0.06 -17.70 16 9 N -0.61 -11.35 3.33 -815.77 -2.71 -14.06 16 10 C 0.08 0.79 5.04 86.73 0.44 1.23 16 11 C -0.12 -1.62 5.35 31.78 0.17 -1.45 16 12 C 0.07 1.50 2.71 46.30 0.13 1.63 16 13 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 14 N -0.53 -15.77 4.53 -861.95 -3.90 -19.68 16 15 C 0.06 1.87 5.48 86.39 0.47 2.35 16 16 C 0.18 8.53 5.42 86.35 0.47 8.99 16 17 N -0.62 -30.67 3.04 -698.12 -2.12 -32.79 16 18 C -0.26 -14.40 9.63 84.03 0.81 -13.59 16 19 H 0.06 3.44 7.88 -2.91 -0.02 3.41 16 20 C -0.05 -2.75 4.94 84.86 0.42 -2.33 16 21 N -0.93 -54.25 11.15 21.65 0.24 -54.01 16 22 Si 0.97 44.33 29.59 68.60 2.03 46.36 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 C 0.14 5.99 6.69 86.35 0.58 6.57 16 27 C 0.05 1.77 5.48 86.38 0.47 2.24 16 28 C 0.12 2.77 5.32 86.85 0.46 3.23 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 1.67 7.11 -2.39 -0.02 1.65 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.27 0.04 4.83 -2.91 -0.01 0.02 16 33 H 0.10 0.41 6.97 -2.39 -0.02 0.39 16 34 H 0.11 0.46 7.09 -2.39 -0.02 0.44 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.11 1.10 7.94 -2.39 -0.02 1.08 16 37 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 38 H 0.09 2.61 6.87 -2.39 -0.02 2.59 16 39 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.06 3.03 6.12 -2.38 -0.01 3.01 16 41 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 42 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 2.27 7.95 -2.39 -0.02 2.26 16 44 H 0.09 2.45 6.79 -2.39 -0.02 2.43 16 45 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.06 1.65 7.74 -2.39 -0.02 1.63 16 Total: -1.00 -73.75 369.70 1.54 -72.22 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 0.98 Total: 5.23 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 6.77 Total: 20.16 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -9.03 Total: -128.58 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.79 Total: -15.38 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -73.75 1.54 -72.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052072920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.819 kcal (2) G-P(sol) polarization free energy of solvation -73.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds