Wall clock time and date at job start Tue Mar 31 2020 18:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30842 * 125.90097 * 2 1 4 4 N 1.40085 * 108.20430 * 180.25652 * 3 2 1 5 5 H 0.97005 * 126.03276 * 179.69525 * 4 3 2 6 6 C 1.34949 * 107.92804 * 359.72244 * 4 3 2 7 7 C 1.50696 * 126.12616 * 180.02562 * 6 4 3 8 8 C 1.35314 * 107.74248 * 359.97438 * 6 4 3 9 9 C 1.50703 * 126.03572 * 180.02562 * 8 6 4 10 10 C 1.50700 * 109.47324 * 89.99545 * 9 8 6 11 11 O 1.21276 * 120.00074 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99842 * 179.97438 * 10 9 8 13 13 C 1.47131 * 121.05696 * 359.97438 * 12 10 9 14 14 C 1.53225 * 108.72039 * 127.77818 * 13 12 10 15 15 O 1.43110 * 109.34625 * 54.15979 * 14 13 12 16 16 C 1.42499 * 113.97047 * 300.04066 * 15 14 13 17 17 C 1.53439 * 113.78882 * 189.45383 * 16 15 14 18 18 N 1.47674 * 85.97770 * 91.25003 * 17 16 15 19 19 C 1.36930 * 134.45805 * 204.29487 * 18 17 16 20 20 H 1.08005 * 120.00242 * 179.97438 * 19 18 17 21 21 C 1.38816 * 120.00401 * 359.97438 * 19 18 17 22 22 N 1.31625 * 119.99548 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00579 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46954 * 60.00398 * 23 21 19 25 25 H 1.48499 * 109.47259 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47352 * 300.00587 * 23 21 19 27 27 C 1.47669 * 91.08748 * 24.28840 * 18 17 16 28 28 C 1.47337 * 121.05573 * 180.02562 * 12 10 9 29 29 H 1.09001 * 109.46918 * 270.20795 * 1 2 3 30 30 H 1.08996 * 109.46910 * 30.21199 * 1 2 3 31 31 H 1.09000 * 109.47163 * 150.21269 * 1 2 3 32 32 H 1.09004 * 109.47021 * 269.97004 * 7 6 4 33 33 H 1.09004 * 109.47267 * 29.96823 * 7 6 4 34 34 H 1.08992 * 109.47378 * 149.97569 * 7 6 4 35 35 H 1.09005 * 109.46934 * 329.99616 * 9 8 6 36 36 H 1.08995 * 109.46932 * 209.99999 * 9 8 6 37 37 H 1.08997 * 109.59507 * 247.54540 * 13 12 10 38 38 H 1.08996 * 109.59331 * 8.00906 * 13 12 10 39 39 H 1.09000 * 109.49406 * 174.11939 * 14 13 12 40 40 H 1.09002 * 109.49184 * 294.16758 * 14 13 12 41 41 H 1.09002 * 113.79278 * 205.51650 * 17 16 15 42 42 H 1.09004 * 113.79780 * 336.98411 * 17 16 15 43 43 H 0.96999 * 119.99710 * 180.02562 * 22 21 19 44 44 H 1.08993 * 113.79461 * 221.44549 * 27 18 17 45 45 H 1.09005 * 113.89300 * 89.98885 * 27 18 17 46 46 H 1.09002 * 109.74923 * 108.71453 * 28 12 10 47 47 H 1.09006 * 109.78338 * 348.01638 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6340 -0.0060 5 1 4.3908 1.2079 -0.0115 6 6 3.6142 -0.7154 -0.0033 7 6 4.8350 -1.5990 -0.0072 8 6 2.3271 -1.1330 0.0047 9 6 1.8599 -2.5658 0.0107 10 6 1.7120 -3.0400 1.4334 11 8 1.9609 -2.2884 2.3521 12 7 1.3020 -4.2990 1.6849 13 6 0.9922 -5.2296 0.5882 14 6 1.7760 -6.5277 0.8085 15 8 1.4965 -7.0339 2.1176 16 6 1.8503 -6.1418 3.1710 17 6 1.7655 -6.7698 4.5685 18 7 3.1853 -7.1292 4.3793 19 6 4.0078 -8.0935 4.8977 20 1 5.0406 -8.1467 4.5865 21 6 3.5141 -9.0027 5.8232 22 7 2.2552 -8.9382 6.2021 23 14 4.6358 -10.3186 6.5299 24 1 5.7740 -9.6735 7.2327 25 1 3.8725 -11.1571 7.4888 26 1 5.1528 -11.1715 5.4297 27 6 3.3627 -6.0322 3.4069 28 6 1.1488 -4.7867 3.0667 29 1 -0.3633 0.0037 1.0277 30 1 -0.3633 0.8881 -0.5171 31 1 -0.3633 -0.8919 -0.5105 32 1 5.1242 -1.8144 -1.0359 33 1 5.6537 -1.0898 0.5013 34 1 4.6101 -2.5317 0.5098 35 1 2.5906 -3.1883 -0.5057 36 1 0.8984 -2.6365 -0.4978 37 1 -0.0764 -5.4445 0.5820 38 1 1.2833 -4.7837 -0.3628 39 1 1.4773 -7.2640 0.0625 40 1 2.8435 -6.3281 0.7155 41 1 1.5977 -6.0462 5.3662 42 1 1.0979 -7.6296 4.6246 43 1 1.9104 -9.5732 6.8491 44 1 3.9639 -6.3059 2.5400 45 1 3.6702 -5.0883 3.8573 46 1 0.0906 -4.9004 3.3020 47 1 1.6064 -4.0809 3.7600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053529954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:38 Heat of formation + Delta-G solvation = 60.681096 kcal Electronic energy + Delta-G solvation = -29791.817149 eV Core-core repulsion = 25785.713407 eV Total energy + Delta-G solvation = -4006.103742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.57455 -40.28404 -38.61232 -36.20611 -34.40551 -33.62286 -33.16835 -32.19720 -30.19871 -29.45686 -28.03191 -27.61699 -26.63501 -25.28903 -25.07190 -23.28434 -21.90095 -20.42593 -19.96071 -18.98681 -18.67468 -17.46416 -17.18291 -16.79482 -16.14306 -15.59343 -15.43494 -15.06298 -14.87188 -14.40180 -14.27693 -14.13786 -13.79743 -13.51825 -13.46456 -13.39754 -13.32256 -13.14668 -12.65190 -12.56543 -12.51449 -12.29749 -12.17494 -11.88598 -11.80832 -11.34467 -11.13751 -10.82088 -10.79882 -10.74731 -10.64181 -10.16501 -9.99873 -9.63116 -9.58762 -9.35782 -9.25749 -8.79904 -8.50172 -8.24371 -6.85780 -5.73196 -3.05041 1.71215 2.47703 2.70712 2.74377 3.11293 3.42368 3.45887 3.47509 4.07554 4.44069 4.46695 4.48153 4.64946 4.78515 4.87066 4.90801 5.02186 5.08594 5.10769 5.18869 5.20706 5.23033 5.29079 5.35133 5.43935 5.50864 5.61164 5.61835 5.72496 5.76198 5.79014 5.80547 5.88382 5.99393 6.09657 6.32309 6.40175 6.51114 6.51516 6.64009 6.98511 7.13819 7.20871 7.48267 7.52768 7.56225 7.84088 8.01277 8.29807 9.06914 9.73582 10.60275 11.44220 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020934 B = 0.002777 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.195721 B =10080.855237 C =10550.452605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.094 3.906 3 N -0.299 5.299 4 N -0.477 5.477 5 H 0.437 0.563 6 C 0.105 3.895 7 C -0.096 4.096 8 C -0.218 4.218 9 C -0.059 4.059 10 C 0.514 3.486 11 O -0.531 6.531 12 N -0.614 5.614 13 C 0.073 3.927 14 C 0.044 3.956 15 O -0.335 6.335 16 C 0.053 3.947 17 C 0.182 3.818 18 N -0.602 5.602 19 C -0.221 4.221 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.921 5.921 23 Si 0.913 3.087 24 H -0.286 1.286 25 H -0.289 1.289 26 H -0.285 1.285 27 C 0.103 3.897 28 C 0.099 3.901 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.053 0.947 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.254 0.746 44 H 0.043 0.957 45 H 0.040 0.960 46 H 0.072 0.928 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 14.552 -18.303 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 N -0.122 5.122 4 N -0.184 5.184 5 H 0.280 0.720 6 C -0.024 4.024 7 C -0.154 4.154 8 C -0.229 4.229 9 C -0.100 4.100 10 C 0.302 3.698 11 O -0.406 6.406 12 N -0.349 5.349 13 C -0.050 4.050 14 C -0.034 4.034 15 O -0.253 6.253 16 C 0.012 3.988 17 C 0.056 3.944 18 N -0.328 5.328 19 C -0.349 4.349 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.743 3.257 24 H -0.213 1.213 25 H -0.215 1.215 26 H -0.211 1.211 27 C -0.024 4.024 28 C -0.024 4.024 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.090 0.910 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.091 15.758 -17.555 23.682 hybrid contribution 1.212 -1.030 0.416 1.644 sum -0.879 14.728 -17.139 22.615 Atomic orbital electron populations 1.20191 0.86896 1.02982 1.03281 1.22122 0.96814 0.90129 0.98178 1.77253 0.86420 1.22239 1.26333 1.46059 1.07301 1.04750 1.60318 0.71969 1.20811 0.96824 0.84952 0.99807 1.20495 0.92973 0.98760 1.03206 1.18997 0.91358 0.94634 1.17946 1.19921 1.03186 0.92501 0.94370 1.20667 0.76660 0.80907 0.91598 1.90702 1.49482 1.53858 1.46604 1.48270 1.67285 1.11815 1.07557 1.22445 1.01057 0.91307 0.90236 1.22881 0.98820 0.94726 0.86979 1.88059 1.83557 1.41200 1.12475 1.23762 0.95228 0.88220 0.91629 1.22207 0.88358 0.96964 0.86869 1.45742 1.07981 1.30262 1.48808 1.18918 0.92234 1.04664 1.19063 0.90372 1.24760 0.96529 0.99488 0.99515 1.69788 1.12984 1.38487 1.35516 0.86192 0.79447 0.81420 0.78631 1.21258 1.21526 1.21119 1.23022 0.93797 0.92272 0.93287 1.22269 1.01255 0.96114 0.82755 0.90266 0.90918 0.90589 0.90022 0.90848 0.89480 0.88575 0.88344 0.90456 0.89229 0.88128 0.92898 0.93891 0.89677 0.93549 0.93908 0.94225 0.91000 0.88167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.26 36.00 0.37 -0.32 16 2 C 0.09 1.15 7.22 -82.41 -0.59 0.55 16 3 N -0.30 -3.89 12.70 33.67 0.43 -3.46 16 4 N -0.48 -5.05 7.36 33.47 0.25 -4.80 16 5 H 0.44 3.20 8.96 -182.60 -1.64 1.56 16 6 C 0.11 1.11 7.21 -82.27 -0.59 0.52 16 7 C -0.10 -0.74 10.04 36.00 0.36 -0.38 16 8 C -0.22 -2.51 4.59 -105.05 -0.48 -3.00 16 9 C -0.06 -0.57 3.98 -29.03 -0.12 -0.68 16 10 C 0.51 6.96 7.71 -10.99 -0.08 6.88 16 11 O -0.53 -9.44 15.53 5.56 0.09 -9.36 16 12 N -0.61 -8.15 3.03 -172.40 -0.52 -8.68 16 13 C 0.07 0.74 6.50 -3.58 -0.02 0.71 16 14 C 0.04 0.56 6.88 37.27 0.26 0.82 16 15 O -0.34 -6.27 10.52 -35.23 -0.37 -6.64 16 16 C 0.05 1.03 1.21 -90.28 -0.11 0.92 16 17 C 0.18 4.34 6.90 -3.18 -0.02 4.31 16 18 N -0.60 -15.80 3.70 -180.32 -0.67 -16.47 16 19 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 20 H 0.08 2.16 7.83 -52.48 -0.41 1.74 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 22 N -0.92 -27.53 11.39 55.49 0.63 -26.89 16 23 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 27 C 0.10 2.18 8.08 -3.17 -0.03 2.15 16 28 C 0.10 1.60 5.78 -3.61 -0.02 1.58 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.54 7.25 -51.93 -0.38 0.16 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.77 7.77 -51.93 -0.40 0.36 16 35 H 0.10 0.72 7.32 -51.93 -0.38 0.34 16 36 H 0.10 0.72 7.09 -51.93 -0.37 0.35 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.59 6.03 -51.93 -0.31 0.28 16 39 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.69 7.20 -51.93 -0.37 0.31 16 41 H 0.04 1.02 8.09 -51.93 -0.42 0.60 16 42 H 0.09 2.27 7.17 -51.93 -0.37 1.89 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.04 16 44 H 0.04 0.88 7.28 -51.93 -0.38 0.50 16 45 H 0.04 0.84 7.94 -51.93 -0.41 0.43 16 46 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.10 1.77 6.91 -51.93 -0.36 1.41 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -37.32 379.81 -9.11 -46.43 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -8.30 Total: -0.53 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -1.34 Total: 7.30 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.12 Total: -60.30 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.28 Total: -16.00 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.32 -9.11 -46.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053529954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.111 kcal (2) G-P(sol) polarization free energy of solvation -37.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds