Wall clock time and date at job start Tue Mar 31 2020 18:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30842 * 125.90097 * 2 1 4 4 N 1.40085 * 108.20430 * 180.25652 * 3 2 1 5 5 H 0.97005 * 126.03276 * 179.69525 * 4 3 2 6 6 C 1.34949 * 107.92804 * 359.72244 * 4 3 2 7 7 C 1.50696 * 126.12616 * 180.02562 * 6 4 3 8 8 C 1.35314 * 107.74248 * 359.97438 * 6 4 3 9 9 C 1.50703 * 126.03572 * 180.02562 * 8 6 4 10 10 C 1.50700 * 109.47324 * 89.99545 * 9 8 6 11 11 O 1.21276 * 120.00074 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99842 * 179.97438 * 10 9 8 13 13 C 1.47131 * 121.05696 * 359.97438 * 12 10 9 14 14 C 1.53225 * 108.72039 * 127.77818 * 13 12 10 15 15 O 1.43110 * 109.34625 * 54.15979 * 14 13 12 16 16 C 1.42499 * 113.97047 * 300.04066 * 15 14 13 17 17 C 1.53439 * 113.78882 * 189.45383 * 16 15 14 18 18 N 1.47674 * 85.97770 * 91.25003 * 17 16 15 19 19 C 1.36930 * 134.45805 * 204.29487 * 18 17 16 20 20 H 1.08005 * 120.00242 * 179.97438 * 19 18 17 21 21 C 1.38816 * 120.00401 * 359.97438 * 19 18 17 22 22 N 1.31625 * 119.99548 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00579 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46954 * 60.00398 * 23 21 19 25 25 H 1.48499 * 109.47259 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47352 * 300.00587 * 23 21 19 27 27 C 1.47669 * 91.08748 * 24.28840 * 18 17 16 28 28 C 1.47337 * 121.05573 * 180.02562 * 12 10 9 29 29 H 1.09001 * 109.46918 * 270.20795 * 1 2 3 30 30 H 1.08996 * 109.46910 * 30.21199 * 1 2 3 31 31 H 1.09000 * 109.47163 * 150.21269 * 1 2 3 32 32 H 1.09004 * 109.47021 * 269.97004 * 7 6 4 33 33 H 1.09004 * 109.47267 * 29.96823 * 7 6 4 34 34 H 1.08992 * 109.47378 * 149.97569 * 7 6 4 35 35 H 1.09005 * 109.46934 * 329.99616 * 9 8 6 36 36 H 1.08995 * 109.46932 * 209.99999 * 9 8 6 37 37 H 1.08997 * 109.59507 * 247.54540 * 13 12 10 38 38 H 1.08996 * 109.59331 * 8.00906 * 13 12 10 39 39 H 1.09000 * 109.49406 * 174.11939 * 14 13 12 40 40 H 1.09002 * 109.49184 * 294.16758 * 14 13 12 41 41 H 1.09002 * 113.79278 * 205.51650 * 17 16 15 42 42 H 1.09004 * 113.79780 * 336.98411 * 17 16 15 43 43 H 0.96999 * 119.99710 * 180.02562 * 22 21 19 44 44 H 1.08993 * 113.79461 * 221.44549 * 27 18 17 45 45 H 1.09005 * 113.89300 * 89.98885 * 27 18 17 46 46 H 1.09002 * 109.74923 * 108.71453 * 28 12 10 47 47 H 1.09006 * 109.78338 * 348.01638 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6340 -0.0060 5 1 4.3908 1.2079 -0.0115 6 6 3.6142 -0.7154 -0.0033 7 6 4.8350 -1.5990 -0.0072 8 6 2.3271 -1.1330 0.0047 9 6 1.8599 -2.5658 0.0107 10 6 1.7120 -3.0400 1.4334 11 8 1.9609 -2.2884 2.3521 12 7 1.3020 -4.2990 1.6849 13 6 0.9922 -5.2296 0.5882 14 6 1.7760 -6.5277 0.8085 15 8 1.4965 -7.0339 2.1176 16 6 1.8503 -6.1418 3.1710 17 6 1.7655 -6.7698 4.5685 18 7 3.1853 -7.1292 4.3793 19 6 4.0078 -8.0935 4.8977 20 1 5.0406 -8.1467 4.5865 21 6 3.5141 -9.0027 5.8232 22 7 2.2552 -8.9382 6.2021 23 14 4.6358 -10.3186 6.5299 24 1 5.7740 -9.6735 7.2327 25 1 3.8725 -11.1571 7.4888 26 1 5.1528 -11.1715 5.4297 27 6 3.3627 -6.0322 3.4069 28 6 1.1488 -4.7867 3.0667 29 1 -0.3633 0.0037 1.0277 30 1 -0.3633 0.8881 -0.5171 31 1 -0.3633 -0.8919 -0.5105 32 1 5.1242 -1.8144 -1.0359 33 1 5.6537 -1.0898 0.5013 34 1 4.6101 -2.5317 0.5098 35 1 2.5906 -3.1883 -0.5057 36 1 0.8984 -2.6365 -0.4978 37 1 -0.0764 -5.4445 0.5820 38 1 1.2833 -4.7837 -0.3628 39 1 1.4773 -7.2640 0.0625 40 1 2.8435 -6.3281 0.7155 41 1 1.5977 -6.0462 5.3662 42 1 1.0979 -7.6296 4.6246 43 1 1.9104 -9.5732 6.8491 44 1 3.9639 -6.3059 2.5400 45 1 3.6702 -5.0883 3.8573 46 1 0.0906 -4.9004 3.3020 47 1 1.6064 -4.0809 3.7600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053529954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:37 Heat of formation + Delta-G solvation = 33.134720 kcal Electronic energy + Delta-G solvation = -29793.011649 eV Core-core repulsion = 25785.713407 eV Total energy + Delta-G solvation = -4007.298243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.37988 -41.56681 -39.92042 -37.69180 -35.63830 -34.41087 -34.26652 -33.88837 -31.55798 -30.26655 -29.27016 -28.61088 -27.87021 -26.86288 -26.43197 -24.52138 -23.53708 -21.32530 -20.92872 -20.33465 -19.65385 -18.80009 -18.26794 -18.17345 -17.47662 -17.03836 -16.62184 -16.38561 -16.01634 -15.79686 -15.64974 -15.15530 -14.97804 -14.76305 -14.64420 -14.37307 -14.12446 -14.05870 -13.99907 -13.82709 -13.33284 -13.22080 -13.18673 -12.95648 -12.88234 -12.79955 -12.73137 -12.55383 -12.44138 -12.04512 -11.90810 -11.68506 -11.43770 -11.40258 -10.97248 -10.75147 -10.72243 -10.16818 -9.45466 -9.30342 -8.93445 -7.90165 -5.24197 0.92533 1.44765 1.48988 1.55126 1.60728 1.74663 2.00389 2.13347 2.46650 2.75563 3.25714 3.34810 3.56956 3.70954 3.76450 3.77639 3.90779 4.11700 4.15317 4.21940 4.27833 4.39025 4.40970 4.50134 4.58715 4.61075 4.69986 4.71356 4.72630 4.75984 4.77498 4.84796 4.95356 5.00906 5.04689 5.09420 5.11354 5.16608 5.23239 5.26172 5.42416 5.47827 5.76388 5.90676 6.43586 6.45810 6.51314 6.76499 6.89888 7.28229 7.58895 8.52603 9.26637 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020934 B = 0.002777 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.195721 B =10080.855237 C =10550.452605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.079 3.921 3 N -0.337 5.337 4 N -0.476 5.476 5 H 0.447 0.553 6 C 0.102 3.898 7 C -0.094 4.094 8 C -0.240 4.240 9 C -0.050 4.050 10 C 0.514 3.486 11 O -0.580 6.580 12 N -0.613 5.613 13 C 0.076 3.924 14 C 0.033 3.967 15 O -0.368 6.368 16 C 0.088 3.912 17 C 0.174 3.826 18 N -0.632 5.632 19 C -0.239 4.239 20 H 0.082 0.918 21 C -0.065 4.065 22 N -0.952 5.952 23 Si 0.982 3.018 24 H -0.278 1.278 25 H -0.292 1.292 26 H -0.275 1.275 27 C 0.106 3.894 28 C 0.110 3.890 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.051 0.949 41 H 0.035 0.965 42 H 0.050 0.950 43 H 0.250 0.750 44 H 0.053 0.947 45 H 0.040 0.960 46 H 0.081 0.919 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 14.450 -21.288 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 N -0.161 5.161 4 N -0.185 5.185 5 H 0.292 0.708 6 C -0.028 4.028 7 C -0.152 4.152 8 C -0.251 4.251 9 C -0.090 4.090 10 C 0.304 3.696 11 O -0.459 6.459 12 N -0.347 5.347 13 C -0.046 4.046 14 C -0.043 4.043 15 O -0.286 6.286 16 C 0.046 3.954 17 C 0.048 3.952 18 N -0.358 5.358 19 C -0.367 4.367 20 H 0.100 0.900 21 C -0.258 4.258 22 N -0.600 5.600 23 Si 0.809 3.191 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.201 1.201 27 C -0.019 4.019 28 C -0.015 4.015 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.111 0.889 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.099 0.901 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.649 15.679 -20.601 25.941 hybrid contribution 1.118 -0.960 1.287 1.956 sum -0.532 14.719 -19.314 24.289 Atomic orbital electron populations 1.20287 0.85401 1.04621 1.03009 1.22645 0.98079 0.90325 0.97668 1.77183 0.87565 1.23440 1.27885 1.46128 1.07142 1.05226 1.60007 0.70770 1.21340 0.97809 0.85113 0.98495 1.20582 0.91993 0.97700 1.04901 1.19321 0.91635 0.95454 1.18720 1.20009 1.05723 0.91653 0.91597 1.21420 0.75124 0.80189 0.92848 1.90690 1.51551 1.55205 1.48500 1.48336 1.67068 1.12480 1.06834 1.22693 1.01639 0.89404 0.90852 1.23303 0.99472 0.97077 0.84469 1.87999 1.83696 1.42292 1.14626 1.23071 0.93657 0.89062 0.89650 1.22104 0.86945 0.95862 0.90278 1.46119 1.08812 1.31215 1.49666 1.19337 0.92848 1.05431 1.19079 0.90045 1.25649 0.98052 1.01892 1.00217 1.69995 1.14687 1.39292 1.36063 0.85114 0.77557 0.78562 0.77837 1.20410 1.21805 1.20063 1.23109 0.95823 0.90680 0.92330 1.21865 1.01028 0.93701 0.84866 0.91337 0.90222 0.88100 0.87320 0.90051 0.90361 0.85573 0.85169 0.88932 0.84492 0.85118 0.93030 0.94735 0.93178 0.94128 0.92906 0.94209 0.90082 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.25 10.26 71.23 0.73 -0.52 16 2 C 0.08 1.82 7.22 43.10 0.31 2.13 16 3 N -0.34 -8.57 12.70 -47.39 -0.60 -9.18 16 4 N -0.48 -9.61 7.36 -48.01 -0.35 -9.97 16 5 H 0.45 6.20 8.96 -213.32 -1.91 4.29 16 6 C 0.10 1.97 7.21 41.40 0.30 2.27 16 7 C -0.09 -1.19 10.04 71.23 0.71 -0.48 16 8 C -0.24 -4.96 4.59 -20.14 -0.09 -5.06 16 9 C -0.05 -0.75 3.98 29.10 0.12 -0.64 16 10 C 0.51 12.65 7.71 87.66 0.68 13.33 16 11 O -0.58 -20.29 15.53 -3.02 -0.05 -20.34 16 12 N -0.61 -14.62 3.03 -817.76 -2.47 -17.10 16 13 C 0.08 1.18 6.50 86.33 0.56 1.74 16 14 C 0.03 0.74 6.88 72.06 0.50 1.23 16 15 O -0.37 -13.34 10.52 -148.98 -1.57 -14.91 16 16 C 0.09 3.37 1.21 -10.48 -0.01 3.36 16 17 C 0.17 8.66 6.90 86.30 0.60 9.26 16 18 N -0.63 -34.00 3.70 -729.29 -2.70 -36.70 16 19 C -0.24 -13.93 10.70 84.04 0.90 -13.03 16 20 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 21 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 22 N -0.95 -58.82 11.39 21.65 0.25 -58.57 16 23 Si 0.98 46.67 29.55 68.60 2.03 48.69 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 26 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 27 C 0.11 4.52 8.08 86.30 0.70 5.22 16 28 C 0.11 3.49 5.78 86.20 0.50 3.99 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.10 1.10 7.25 -2.39 -0.02 1.08 16 32 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.08 1.17 7.77 -2.39 -0.02 1.16 16 35 H 0.13 1.18 7.32 -2.38 -0.02 1.17 16 36 H 0.13 1.17 7.09 -2.39 -0.02 1.15 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.14 0.89 6.03 -2.39 -0.01 0.88 16 39 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 1.16 7.20 -2.39 -0.02 1.15 16 41 H 0.04 1.74 8.09 -2.39 -0.02 1.72 16 42 H 0.05 2.82 7.17 -2.38 -0.02 2.80 16 43 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 44 H 0.05 2.12 7.28 -2.39 -0.02 2.11 16 45 H 0.04 1.71 7.94 -2.38 -0.02 1.69 16 46 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 47 H 0.08 2.91 6.91 -2.38 -0.02 2.90 16 Total: -1.00 -85.58 379.81 0.58 -85.01 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -0.91 Total: 13.60 kcal Atomic # 6 Polarization: 12.50 SS G_CDS: 6.96 Total: 19.46 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -5.88 Total: -131.52 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -1.61 Total: -35.25 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Total: -85.58 0.58 -85.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053529954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.143 kcal (2) G-P(sol) polarization free energy of solvation -85.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds