Wall clock time and date at job start Tue Mar 31 2020 17:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35367 * 126.38517 * 2 1 4 4 C 1.41496 * 105.50684 * 179.97438 * 3 2 1 5 5 C 1.47705 * 126.52320 * 179.97438 * 4 3 2 6 6 O 1.21580 * 119.99756 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00427 * 179.97438 * 5 4 3 8 8 C 1.46503 * 120.00271 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47188 * 180.02562 * 8 7 5 10 10 H 1.09004 * 109.82923 * 59.43633 * 9 8 7 11 11 C 1.54472 * 109.91029 * 180.37424 * 9 8 7 12 12 C 1.55502 * 102.38857 * 140.91960 * 11 9 8 13 13 C 1.53884 * 100.76147 * 327.02986 * 12 11 9 14 14 C 1.52376 * 115.68007 * 263.23875 * 13 12 11 15 15 N 1.47279 * 87.70112 * 218.74400 * 14 13 12 16 16 C 1.36939 * 135.93248 * 206.17771 * 15 14 13 17 17 H 1.07996 * 119.99885 * 7.80140 * 16 15 14 18 18 C 1.38809 * 119.99898 * 187.79359 * 16 15 14 19 19 N 1.31618 * 120.00225 * 195.39016 * 18 16 15 20 20 Si 1.86802 * 119.99833 * 15.39441 * 18 16 15 21 21 H 1.48508 * 109.46983 * 269.99756 * 20 18 16 22 22 H 1.48499 * 109.47341 * 29.99379 * 20 18 16 23 23 H 1.48499 * 109.47374 * 149.99577 * 20 18 16 24 24 C 1.47268 * 88.13025 * 26.43059 * 15 14 13 25 25 O 1.42405 * 106.66712 * 34.97360 * 13 12 11 26 26 N 1.31817 * 106.95970 * 0.25895 * 4 3 2 27 27 N 1.28458 * 110.07186 * 359.56113 * 26 4 3 28 28 C 1.46506 * 124.88714 * 180.20446 * 27 26 4 29 29 H 1.09009 * 109.46991 * 90.02748 * 1 2 3 30 30 H 1.08997 * 109.47353 * 210.02390 * 1 2 3 31 31 H 1.08997 * 109.47211 * 330.03118 * 1 2 3 32 32 H 1.08002 * 127.24795 * 359.96870 * 3 2 1 33 33 H 0.97008 * 120.00058 * 0.02562 * 7 5 4 34 34 H 1.08993 * 109.47298 * 59.99770 * 8 7 5 35 35 H 1.09002 * 109.46935 * 299.99719 * 8 7 5 36 36 H 1.08998 * 110.82626 * 259.14555 * 11 9 8 37 37 H 1.08994 * 110.82186 * 22.49919 * 11 9 8 38 38 H 1.09000 * 111.16218 * 209.15800 * 12 11 9 39 39 H 1.08996 * 111.16225 * 84.90574 * 12 11 9 40 40 H 1.09000 * 113.51543 * 104.03491 * 14 13 12 41 41 H 1.09003 * 113.51508 * 333.44241 * 14 13 12 42 42 H 0.96998 * 119.99980 * 354.91496 * 19 18 16 43 43 H 1.08999 * 113.51261 * 88.27275 * 24 15 14 44 44 H 1.09004 * 113.51750 * 218.85919 * 24 15 14 45 45 H 1.09002 * 109.46868 * 270.29078 * 28 27 26 46 46 H 1.09001 * 109.46503 * 30.28215 * 28 27 26 47 47 H 1.08991 * 109.47505 * 150.28566 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6320 0.5855 0.0006 5 6 4.8764 1.3813 0.0003 6 8 4.8212 2.5958 -0.0001 7 7 6.0730 0.7611 0.0015 8 6 7.3072 1.5504 0.0018 9 6 8.5140 0.6100 0.0025 10 1 8.4855 -0.0288 -0.8802 11 6 9.8217 1.4322 0.0123 12 6 10.7274 0.6071 0.9698 13 6 9.6789 0.0515 1.9496 14 6 9.5062 0.8341 3.2456 15 7 9.3556 -0.4580 3.9362 16 6 8.7395 -0.8977 5.0774 17 1 8.0962 -0.2327 5.6343 18 6 8.9419 -2.1983 5.5183 19 7 8.1373 -2.7204 6.4197 20 14 10.3561 -3.2077 4.8323 21 1 9.8972 -3.9504 3.6310 22 1 11.4736 -2.3039 4.4584 23 1 10.8219 -4.1710 5.8620 24 6 10.1626 -1.0690 2.8666 25 8 8.5011 -0.1980 1.1891 26 7 3.5420 -0.7296 -0.0048 27 7 2.3081 -1.0870 0.0006 28 6 1.8376 -2.4745 0.0014 29 1 -0.3633 -0.0005 -1.0278 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5133 32 1 2.0057 2.1260 -0.0005 33 1 6.1170 -0.2080 0.0022 34 1 7.3359 2.1796 0.8913 35 1 7.3370 2.1784 -0.8887 36 1 10.2563 1.4810 -0.9861 37 1 9.6469 2.4333 0.4063 38 1 11.4445 1.2479 1.4828 39 1 11.2332 -0.1979 0.4367 40 1 8.6047 1.4463 3.2671 41 1 10.3985 1.3848 3.5433 42 1 7.4490 -2.1738 6.8300 43 1 11.2349 -1.0400 3.0603 44 1 9.8134 -2.0579 2.5692 45 1 1.7211 -2.8191 -1.0261 46 1 2.5638 -3.1040 0.5155 47 1 0.8781 -2.5325 0.5151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053576940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:55 Heat of formation + Delta-G solvation = 66.428573 kcal Electronic energy + Delta-G solvation = -29047.712807 eV Core-core repulsion = 25041.858294 eV Total energy + Delta-G solvation = -4005.854513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.78246 -40.29213 -39.12840 -36.81022 -34.41254 -33.70747 -32.82911 -32.31206 -32.00125 -29.69707 -27.86082 -27.37397 -26.59893 -25.39382 -24.17247 -22.61945 -21.48406 -21.09661 -20.96796 -19.52321 -19.24150 -17.36972 -17.35511 -16.67299 -16.57756 -16.50756 -15.71398 -15.62826 -14.90990 -14.59136 -14.32493 -14.10158 -13.89910 -13.67581 -13.56129 -13.35457 -13.31014 -13.05980 -12.96400 -12.84298 -12.74634 -12.46883 -12.37224 -12.04697 -11.70082 -11.54837 -11.32869 -10.90060 -10.77681 -10.64631 -10.33969 -10.12899 -10.03957 -9.68017 -9.26601 -9.20114 -9.04035 -8.92525 -8.84244 -8.62604 -7.10323 -6.22950 -3.12695 1.55407 1.98986 2.30294 3.20899 3.45541 3.50952 3.51416 3.66065 3.91829 4.20051 4.40008 4.52310 4.66101 4.69830 4.71087 4.77201 4.80461 4.81088 4.98200 5.05823 5.08023 5.17061 5.21476 5.32100 5.41993 5.46197 5.51752 5.54075 5.59225 5.63489 5.75289 5.78565 5.93190 6.01128 6.12983 6.21604 6.29844 6.32475 6.38091 6.48503 6.49951 6.61447 6.62640 7.20516 7.53185 7.55188 7.87503 8.31006 8.31938 9.05679 9.59307 10.45135 11.27474 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010490 B = 0.003408 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.525660 B = 8214.375762 C =10012.971746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.005 3.995 3 C -0.179 4.179 4 C -0.013 4.013 5 C 0.605 3.395 6 O -0.541 6.541 7 N -0.706 5.706 8 C 0.113 3.887 9 C 0.064 3.936 10 H 0.085 0.915 11 C -0.143 4.143 12 C -0.138 4.138 13 C 0.071 3.929 14 C 0.106 3.894 15 N -0.617 5.617 16 C -0.298 4.298 17 H 0.080 0.920 18 C -0.025 4.025 19 N -0.934 5.934 20 Si 1.063 2.937 21 H -0.293 1.293 22 H -0.283 1.283 23 H -0.296 1.296 24 C 0.108 3.892 25 O -0.330 6.330 26 N -0.256 5.256 27 N -0.281 5.281 28 C 0.084 3.916 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.161 0.839 33 H 0.412 0.588 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.044 0.956 42 H 0.260 0.740 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.084 0.916 46 H 0.100 0.900 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.059 4.795 -19.669 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C -0.207 4.207 4 C -0.173 4.173 5 C 0.390 3.610 6 O -0.417 6.417 7 N -0.357 5.357 8 C -0.010 4.010 9 C 0.005 3.995 10 H 0.102 0.898 11 C -0.181 4.181 12 C -0.177 4.177 13 C 0.030 3.970 14 C -0.021 4.021 15 N -0.344 5.344 16 C -0.425 4.425 17 H 0.098 0.902 18 C -0.224 4.224 19 N -0.577 5.577 20 Si 0.895 3.105 21 H -0.221 1.221 22 H -0.209 1.209 23 H -0.223 1.223 24 C -0.018 4.018 25 O -0.249 6.249 26 N -0.092 5.092 27 N -0.070 5.070 28 C -0.056 4.056 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.179 0.821 33 H 0.248 0.752 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.103 0.897 46 H 0.119 0.881 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.069 2.846 -19.322 21.131 hybrid contribution -1.011 1.834 0.107 2.097 sum -9.080 4.679 -19.214 21.761 Atomic orbital electron populations 1.20335 0.86657 1.03894 1.03123 1.21401 0.95437 0.86750 1.08305 1.21491 0.90496 0.99538 1.09216 1.21849 0.95100 0.89747 1.10630 1.16852 0.81701 0.86293 0.76171 1.90769 1.86953 1.12920 1.51054 1.45693 1.04818 1.11333 1.73869 1.21826 0.82613 0.93872 1.02724 1.23089 0.94023 0.92395 0.89968 0.89765 1.23060 0.94378 0.99775 1.00909 1.22997 0.98012 0.99743 0.96952 1.23140 0.84347 0.98635 0.90846 1.22733 0.98859 0.91156 0.89367 1.46073 1.59438 1.03416 1.25489 1.20103 1.22656 0.99060 1.00639 0.90227 1.25745 1.02886 0.94793 0.98949 1.70887 1.19769 1.36297 1.30755 0.83769 0.76201 0.75515 0.75050 1.22076 1.20919 1.22333 1.22758 0.95542 0.96744 0.86777 1.88394 1.41264 1.62242 1.32971 1.73582 1.01741 1.14899 1.18947 1.45333 1.02797 1.07599 1.51249 1.22189 1.01785 0.77311 1.04364 0.90422 0.91160 0.89577 0.82135 0.75205 0.90715 0.90524 0.89987 0.90052 0.89586 0.90173 0.93311 0.93846 0.92972 0.92432 0.92293 0.89706 0.88126 0.88667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.10 36.00 0.36 -0.13 16 2 C 0.00 0.05 6.92 -82.21 -0.57 -0.52 16 3 C -0.18 -2.38 10.73 -39.37 -0.42 -2.81 16 4 C -0.01 -0.21 7.13 -82.77 -0.59 -0.80 16 5 C 0.61 10.25 7.82 -12.40 -0.10 10.15 16 6 O -0.54 -10.29 16.93 5.30 0.09 -10.20 16 7 N -0.71 -10.94 5.47 -61.30 -0.34 -11.28 16 8 C 0.11 1.58 5.24 -4.04 -0.02 1.56 16 9 C 0.06 0.84 3.61 -25.96 -0.09 0.75 16 10 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 11 C -0.14 -1.55 6.56 -24.63 -0.16 -1.71 16 12 C -0.14 -1.77 6.49 -24.94 -0.16 -1.93 16 13 C 0.07 1.30 1.56 -90.66 -0.14 1.16 16 14 C 0.11 2.20 8.24 -7.87 -0.06 2.14 16 15 N -0.62 -16.04 3.63 -184.80 -0.67 -16.71 16 16 C -0.30 -9.05 11.03 -15.06 -0.17 -9.22 16 17 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 18 C -0.03 -0.78 5.50 -17.43 -0.10 -0.87 16 19 N -0.93 -30.52 13.70 55.49 0.76 -29.76 16 20 Si 1.06 27.40 25.51 -169.99 -4.34 23.06 16 21 H -0.29 -7.30 6.97 56.52 0.39 -6.91 16 22 H -0.28 -6.65 5.64 56.52 0.32 -6.34 16 23 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 24 C 0.11 2.36 5.18 -7.73 -0.04 2.32 16 25 O -0.33 -6.09 10.69 -35.23 -0.38 -6.47 16 26 N -0.26 -3.79 11.67 33.42 0.39 -3.40 16 27 N -0.28 -3.25 3.70 -63.85 -0.24 -3.49 16 28 C 0.08 0.57 11.11 59.85 0.66 1.23 16 29 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.07 0.31 7.00 -51.93 -0.36 -0.05 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.16 1.92 8.06 -52.49 -0.42 1.49 16 33 H 0.41 6.34 8.13 -40.82 -0.33 6.01 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 38 H 0.09 0.99 7.93 -51.93 -0.41 0.58 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.04 0.83 7.99 -51.93 -0.41 0.42 16 42 H 0.26 8.43 8.73 -40.82 -0.36 8.08 16 43 H 0.06 1.18 6.96 -51.93 -0.36 0.82 16 44 H 0.06 1.37 6.31 -51.93 -0.33 1.04 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.09 0.39 6.95 -51.93 -0.36 0.03 16 LS Contribution 383.60 15.07 5.78 5.78 Total: -1.00 -39.34 383.60 -7.83 -47.17 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.29 Total: 3.96 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.60 Total: 1.32 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -0.09 Total: -64.63 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.29 Total: -16.66 kcal Atomic # 14 Polarization: 27.40 SS G_CDS: -4.34 Total: 23.06 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.34 -7.83 -47.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053576940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.596 kcal (2) G-P(sol) polarization free energy of solvation -39.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds