Wall clock time and date at job start Tue Mar 31 2020 17:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35367 * 126.38517 * 2 1 4 4 C 1.41496 * 105.50684 * 179.97438 * 3 2 1 5 5 C 1.47705 * 126.52320 * 179.97438 * 4 3 2 6 6 O 1.21580 * 119.99756 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00427 * 179.97438 * 5 4 3 8 8 C 1.46503 * 120.00271 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47188 * 180.02562 * 8 7 5 10 10 H 1.09004 * 109.82923 * 59.43633 * 9 8 7 11 11 C 1.54472 * 109.91029 * 180.37424 * 9 8 7 12 12 C 1.55502 * 102.38857 * 140.91960 * 11 9 8 13 13 C 1.53884 * 100.76147 * 327.02986 * 12 11 9 14 14 C 1.52376 * 115.68007 * 263.23875 * 13 12 11 15 15 N 1.47279 * 87.70112 * 218.74400 * 14 13 12 16 16 C 1.36939 * 135.93248 * 206.17771 * 15 14 13 17 17 H 1.07996 * 119.99885 * 7.80140 * 16 15 14 18 18 C 1.38809 * 119.99898 * 187.79359 * 16 15 14 19 19 N 1.31618 * 120.00225 * 195.39016 * 18 16 15 20 20 Si 1.86802 * 119.99833 * 15.39441 * 18 16 15 21 21 H 1.48508 * 109.46983 * 269.99756 * 20 18 16 22 22 H 1.48499 * 109.47341 * 29.99379 * 20 18 16 23 23 H 1.48499 * 109.47374 * 149.99577 * 20 18 16 24 24 C 1.47268 * 88.13025 * 26.43059 * 15 14 13 25 25 O 1.42405 * 106.66712 * 34.97360 * 13 12 11 26 26 N 1.31817 * 106.95970 * 0.25895 * 4 3 2 27 27 N 1.28458 * 110.07186 * 359.56113 * 26 4 3 28 28 C 1.46506 * 124.88714 * 180.20446 * 27 26 4 29 29 H 1.09009 * 109.46991 * 90.02748 * 1 2 3 30 30 H 1.08997 * 109.47353 * 210.02390 * 1 2 3 31 31 H 1.08997 * 109.47211 * 330.03118 * 1 2 3 32 32 H 1.08002 * 127.24795 * 359.96870 * 3 2 1 33 33 H 0.97008 * 120.00058 * 0.02562 * 7 5 4 34 34 H 1.08993 * 109.47298 * 59.99770 * 8 7 5 35 35 H 1.09002 * 109.46935 * 299.99719 * 8 7 5 36 36 H 1.08998 * 110.82626 * 259.14555 * 11 9 8 37 37 H 1.08994 * 110.82186 * 22.49919 * 11 9 8 38 38 H 1.09000 * 111.16218 * 209.15800 * 12 11 9 39 39 H 1.08996 * 111.16225 * 84.90574 * 12 11 9 40 40 H 1.09000 * 113.51543 * 104.03491 * 14 13 12 41 41 H 1.09003 * 113.51508 * 333.44241 * 14 13 12 42 42 H 0.96998 * 119.99980 * 354.91496 * 19 18 16 43 43 H 1.08999 * 113.51261 * 88.27275 * 24 15 14 44 44 H 1.09004 * 113.51750 * 218.85919 * 24 15 14 45 45 H 1.09002 * 109.46868 * 270.29078 * 28 27 26 46 46 H 1.09001 * 109.46503 * 30.28215 * 28 27 26 47 47 H 1.08991 * 109.47505 * 150.28566 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6320 0.5855 0.0006 5 6 4.8764 1.3813 0.0003 6 8 4.8212 2.5958 -0.0001 7 7 6.0730 0.7611 0.0015 8 6 7.3072 1.5504 0.0018 9 6 8.5140 0.6100 0.0025 10 1 8.4855 -0.0288 -0.8802 11 6 9.8217 1.4322 0.0123 12 6 10.7274 0.6071 0.9698 13 6 9.6789 0.0515 1.9496 14 6 9.5062 0.8341 3.2456 15 7 9.3556 -0.4580 3.9362 16 6 8.7395 -0.8977 5.0774 17 1 8.0962 -0.2327 5.6343 18 6 8.9419 -2.1983 5.5183 19 7 8.1373 -2.7204 6.4197 20 14 10.3561 -3.2077 4.8323 21 1 9.8972 -3.9504 3.6310 22 1 11.4736 -2.3039 4.4584 23 1 10.8219 -4.1710 5.8620 24 6 10.1626 -1.0690 2.8666 25 8 8.5011 -0.1980 1.1891 26 7 3.5420 -0.7296 -0.0048 27 7 2.3081 -1.0870 0.0006 28 6 1.8376 -2.4745 0.0014 29 1 -0.3633 -0.0005 -1.0278 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5133 32 1 2.0057 2.1260 -0.0005 33 1 6.1170 -0.2080 0.0022 34 1 7.3359 2.1796 0.8913 35 1 7.3370 2.1784 -0.8887 36 1 10.2563 1.4810 -0.9861 37 1 9.6469 2.4333 0.4063 38 1 11.4445 1.2479 1.4828 39 1 11.2332 -0.1979 0.4367 40 1 8.6047 1.4463 3.2671 41 1 10.3985 1.3848 3.5433 42 1 7.4490 -2.1738 6.8300 43 1 11.2349 -1.0400 3.0603 44 1 9.8134 -2.0579 2.5692 45 1 1.7211 -2.8191 -1.0261 46 1 2.5638 -3.1040 0.5155 47 1 0.8781 -2.5325 0.5151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053576940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:54 Heat of formation + Delta-G solvation = 34.769132 kcal Electronic energy + Delta-G solvation = -29049.085663 eV Core-core repulsion = 25041.858294 eV Total energy + Delta-G solvation = -4007.227369 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.73357 -41.65647 -40.44951 -38.34716 -35.75340 -34.62611 -34.44972 -33.61265 -33.16539 -31.10441 -29.15192 -28.34530 -27.69399 -27.08730 -25.43763 -23.84129 -22.71498 -22.57075 -22.03234 -20.79241 -20.61821 -19.52658 -18.33771 -17.81985 -17.59858 -17.42719 -17.31751 -16.89723 -16.20722 -16.01333 -15.65770 -15.58104 -15.26328 -15.19803 -15.00725 -14.50771 -14.21747 -14.09962 -13.97431 -13.76720 -13.55794 -13.43904 -13.40197 -13.23754 -13.01083 -12.63237 -12.60132 -12.48522 -12.36489 -11.91183 -11.86815 -11.58663 -11.40064 -11.33893 -11.26074 -10.83931 -10.37935 -10.33382 -10.02707 -9.95929 -9.26312 -8.66403 -5.47629 0.43731 1.05648 1.36902 1.49756 1.51588 1.65315 2.07414 2.29297 2.53909 2.66246 3.03641 3.14033 3.28467 3.43991 3.64061 3.69991 3.76355 3.84694 3.92226 4.16797 4.18338 4.30910 4.36642 4.46177 4.47980 4.53796 4.57187 4.58088 4.62001 4.63961 4.72986 4.76855 4.80903 4.88752 4.94951 4.98236 5.04449 5.05659 5.15253 5.19857 5.25639 5.32135 5.34630 5.84294 5.91574 6.25481 6.32154 6.66642 6.82283 7.05640 7.31534 8.26126 8.85357 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010490 B = 0.003408 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.525660 B = 8214.375762 C =10012.971746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.022 3.978 3 C -0.208 4.208 4 C -0.047 4.047 5 C 0.598 3.402 6 O -0.573 6.573 7 N -0.705 5.705 8 C 0.112 3.888 9 C 0.061 3.939 10 H 0.108 0.892 11 C -0.132 4.132 12 C -0.126 4.126 13 C 0.086 3.914 14 C 0.101 3.899 15 N -0.655 5.655 16 C -0.293 4.293 17 H 0.036 0.964 18 C -0.086 4.086 19 N -0.968 5.968 20 Si 1.107 2.893 21 H -0.281 1.281 22 H -0.244 1.244 23 H -0.299 1.299 24 C 0.100 3.900 25 O -0.367 6.367 26 N -0.283 5.283 27 N -0.279 5.279 28 C 0.071 3.929 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.164 0.836 33 H 0.411 0.589 34 H 0.050 0.950 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.027 0.973 41 H 0.073 0.927 42 H 0.242 0.758 43 H 0.085 0.915 44 H 0.044 0.956 45 H 0.109 0.891 46 H 0.092 0.908 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.871 4.443 -22.936 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.103 4.103 3 C -0.236 4.236 4 C -0.205 4.205 5 C 0.384 3.616 6 O -0.452 6.452 7 N -0.354 5.354 8 C -0.011 4.011 9 C 0.003 3.997 10 H 0.126 0.874 11 C -0.170 4.170 12 C -0.165 4.165 13 C 0.045 3.955 14 C -0.025 4.025 15 N -0.383 5.383 16 C -0.420 4.420 17 H 0.054 0.946 18 C -0.278 4.278 19 N -0.614 5.614 20 Si 0.930 3.070 21 H -0.207 1.207 22 H -0.168 1.168 23 H -0.227 1.227 24 C -0.025 4.025 25 O -0.286 6.286 26 N -0.120 5.120 27 N -0.068 5.068 28 C -0.067 4.067 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.182 0.818 33 H 0.247 0.753 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.140 0.860 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.103 0.897 44 H 0.062 0.938 45 H 0.127 0.873 46 H 0.111 0.889 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.856 2.528 -22.637 23.788 hybrid contribution -1.568 1.994 1.106 2.768 sum -8.424 4.523 -21.532 23.559 Atomic orbital electron populations 1.20548 0.82892 1.05439 1.04917 1.22063 0.97402 0.85558 1.05309 1.21741 0.90198 1.00764 1.10940 1.21863 0.95428 0.90448 1.12766 1.17175 0.82585 0.86172 0.75658 1.90723 1.87522 1.14094 1.52821 1.45785 1.05144 1.11373 1.73140 1.21954 0.82541 0.94053 1.02546 1.23377 0.94893 0.92631 0.88754 0.87417 1.23106 0.92150 0.99007 1.02744 1.23014 0.96862 1.00779 0.95802 1.22877 0.86075 0.95564 0.90964 1.23022 0.98950 0.89722 0.90761 1.46154 1.60482 1.06817 1.24860 1.19914 1.21869 0.98655 1.01600 0.94563 1.27256 1.04748 0.96582 0.99170 1.71015 1.20885 1.36504 1.32967 0.83292 0.74205 0.74730 0.74741 1.20746 1.16812 1.22697 1.23050 0.96166 0.97140 0.86119 1.88369 1.41989 1.63479 1.34770 1.73502 1.03809 1.14533 1.20169 1.45842 1.02024 1.09447 1.49511 1.22636 1.02868 0.74822 1.06378 0.88315 0.88865 0.88777 0.81813 0.75296 0.93190 0.88284 0.86003 0.89654 0.87558 0.87879 0.95489 0.90917 0.94866 0.89735 0.93808 0.87289 0.88929 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.10 71.24 0.72 -0.02 16 2 C 0.02 0.44 6.92 41.40 0.29 0.73 16 3 C -0.21 -5.70 10.73 22.41 0.24 -5.46 16 4 C -0.05 -1.54 7.13 42.45 0.30 -1.23 16 5 C 0.60 21.37 7.82 86.75 0.68 22.05 16 6 O -0.57 -22.95 16.93 -3.97 -0.07 -23.02 16 7 N -0.70 -22.56 5.47 -466.11 -2.55 -25.10 16 8 C 0.11 3.09 5.24 86.38 0.45 3.54 16 9 C 0.06 1.47 3.61 31.09 0.11 1.58 16 10 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 11 C -0.13 -2.26 6.56 31.96 0.21 -2.05 16 12 C -0.13 -2.61 6.49 31.75 0.21 -2.40 16 13 C 0.09 2.94 1.56 -10.81 -0.02 2.92 16 14 C 0.10 4.16 8.24 83.47 0.69 4.84 16 15 N -0.65 -34.28 3.63 -739.99 -2.69 -36.96 16 16 C -0.29 -18.54 11.03 84.03 0.93 -17.62 16 17 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 18 C -0.09 -5.49 5.50 84.86 0.47 -5.02 16 19 N -0.97 -66.10 13.70 21.65 0.30 -65.80 16 20 Si 1.11 55.23 25.51 68.60 1.75 56.98 16 21 H -0.28 -13.34 6.97 99.48 0.69 -12.65 16 22 H -0.24 -10.49 5.64 99.48 0.56 -9.93 16 23 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 24 C 0.10 4.15 5.18 83.57 0.43 4.58 16 25 O -0.37 -13.16 10.69 -148.98 -1.59 -14.75 16 26 N -0.28 -8.62 11.67 -48.18 -0.56 -9.19 16 27 N -0.28 -6.26 3.70 -355.92 -1.32 -7.57 16 28 C 0.07 0.83 11.11 127.77 1.42 2.25 16 29 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.09 0.47 7.00 -2.39 -0.02 0.45 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.16 4.13 8.06 -2.91 -0.02 4.10 16 33 H 0.41 13.13 8.13 -92.70 -0.75 12.37 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 35 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.43 7.85 -2.39 -0.02 1.41 16 38 H 0.11 1.83 7.93 -2.39 -0.02 1.82 16 39 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.07 2.59 7.99 -2.39 -0.02 2.57 16 42 H 0.24 16.77 8.73 -92.71 -0.81 15.96 16 43 H 0.09 3.09 6.96 -2.39 -0.02 3.07 16 44 H 0.04 1.95 6.31 -2.38 -0.02 1.94 16 45 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 46 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.13 0.64 6.95 -2.39 -0.02 0.62 16 Total: -1.00 -93.78 383.60 0.44 -93.34 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.04 Total: 23.37 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 7.12 Total: 8.71 kcal Atomic # 7 Polarization: -137.81 SS G_CDS: -6.82 Total: -144.63 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -1.66 Total: -37.77 kcal Atomic # 14 Polarization: 55.23 SS G_CDS: 1.75 Total: 56.98 kcal Total: -93.78 0.44 -93.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053576940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.111 kcal (2) G-P(sol) polarization free energy of solvation -93.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds