Wall clock time and date at job start Tue Mar 31 2020 17:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35369 * 126.38800 * 2 1 4 4 C 1.41506 * 105.50408 * 180.02562 * 3 2 1 5 5 C 1.47711 * 126.51704 * 180.02562 * 4 3 2 6 6 O 1.21576 * 119.99981 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99832 * 179.97438 * 5 4 3 8 8 C 1.46503 * 119.99802 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.47051 * 180.02562 * 8 7 5 10 10 H 1.08996 * 110.64016 * 307.87563 * 9 8 7 11 11 C 1.55056 * 110.58326 * 185.00046 * 9 8 7 12 12 C 1.55023 * 102.12990 * 204.93500 * 11 9 8 13 13 C 1.53325 * 103.78634 * 20.86591 * 12 11 9 14 14 C 1.52646 * 115.56358 * 133.64561 * 13 12 11 15 15 N 1.47223 * 87.78158 * 90.04343 * 14 13 12 16 16 C 1.36942 * 135.96799 * 206.41017 * 15 14 13 17 17 H 1.07998 * 119.99662 * 6.48846 * 16 15 14 18 18 C 1.38810 * 119.99956 * 186.48255 * 16 15 14 19 19 N 1.31624 * 120.00077 * 6.42088 * 18 16 15 20 20 Si 1.86795 * 119.99801 * 186.41661 * 18 16 15 21 21 H 1.48495 * 109.47273 * 265.02243 * 20 18 16 22 22 H 1.48505 * 109.47005 * 145.02269 * 20 18 16 23 23 H 1.48507 * 109.47115 * 25.02459 * 20 18 16 24 24 C 1.47220 * 88.06553 * 26.66837 * 15 14 13 25 25 O 1.42839 * 108.32946 * 1.60036 * 13 12 11 26 26 N 1.31802 * 106.96087 * 0.25259 * 4 3 2 27 27 N 1.28464 * 110.07711 * 359.56615 * 26 4 3 28 28 C 1.46502 * 124.88610 * 180.15590 * 27 26 4 29 29 H 1.08998 * 109.47482 * 89.97381 * 1 2 3 30 30 H 1.08998 * 109.47723 * 209.98022 * 1 2 3 31 31 H 1.09007 * 109.47330 * 329.97992 * 1 2 3 32 32 H 1.08001 * 127.24789 * 0.02562 * 3 2 1 33 33 H 0.96995 * 120.00214 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.46906 * 60.00262 * 8 7 5 35 35 H 1.09003 * 109.47144 * 300.00390 * 8 7 5 36 36 H 1.09004 * 110.87195 * 86.77921 * 11 9 8 37 37 H 1.08999 * 111.05103 * 323.17302 * 11 9 8 38 38 H 1.09002 * 110.56851 * 262.28773 * 12 11 9 39 39 H 1.08999 * 110.69205 * 139.49939 * 12 11 9 40 40 H 1.08996 * 113.50317 * 335.31791 * 14 13 12 41 41 H 1.09000 * 113.55597 * 204.78002 * 14 13 12 42 42 H 0.97001 * 119.99419 * 179.97438 * 19 18 16 43 43 H 1.09003 * 113.50121 * 88.06251 * 24 15 14 44 44 H 1.09000 * 113.49959 * 218.60064 * 24 15 14 45 45 H 1.08999 * 109.47063 * 270.33560 * 28 27 26 46 46 H 1.08996 * 109.46909 * 30.33877 * 28 27 26 47 47 H 1.09002 * 109.47089 * 150.33755 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5853 -0.0006 5 6 4.8765 1.3811 -0.0003 6 8 4.8214 2.5956 0.0001 7 7 6.0730 0.7608 -0.0005 8 6 7.3072 1.5501 -0.0007 9 6 8.5141 0.6096 -0.0015 10 1 8.4325 -0.1207 0.8035 11 6 9.8330 1.4151 0.1247 12 6 10.8630 0.4579 -0.5280 13 6 10.0025 -0.4681 -1.3958 14 6 10.5115 -0.7010 -2.8159 15 7 11.2670 -1.8522 -2.2951 16 6 12.4048 -2.5258 -2.6514 17 1 13.0234 -2.1537 -3.4547 18 6 12.7631 -3.6868 -1.9801 19 7 11.9479 -4.2098 -1.0887 20 14 14.4019 -4.5068 -2.3417 21 1 14.2082 -5.5745 -3.3554 22 1 14.9439 -5.1017 -1.0936 23 1 15.3567 -3.4961 -2.8635 24 6 10.2601 -1.9662 -1.2271 25 8 8.6402 -0.0546 -1.2798 26 7 3.5419 -0.7296 -0.0065 27 7 2.3080 -1.0871 -0.0004 28 6 1.8376 -2.4745 -0.0010 29 1 -0.3634 0.0005 -1.0276 30 1 -0.3634 -0.8901 0.5135 31 1 -0.3634 0.8898 0.5142 32 1 2.0057 2.1260 0.0004 33 1 6.1170 -0.2081 -0.0011 34 1 7.3366 2.1788 0.8892 35 1 7.3363 2.1787 -0.8908 36 1 10.0793 1.5953 1.1711 37 1 9.7725 2.3540 -0.4255 38 1 11.3913 -0.1141 0.2348 39 1 11.5686 1.0142 -1.1450 40 1 11.1464 0.1033 -3.1875 41 1 9.7270 -0.9785 -3.5199 42 1 12.1982 -5.0213 -0.6199 43 1 9.4066 -2.5874 -1.4990 44 1 10.6827 -2.2299 -0.2576 45 1 1.7209 -2.8182 -1.0288 46 1 2.5637 -3.1045 0.5126 47 1 0.8780 -2.5330 0.5129 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053576942.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:59 Heat of formation + Delta-G solvation = 33.094424 kcal Electronic energy + Delta-G solvation = -28383.331803 eV Core-core repulsion = 24376.031813 eV Total energy + Delta-G solvation = -4007.299990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.68234 -41.48507 -40.40368 -38.22158 -35.74295 -34.55121 -34.15461 -33.56109 -33.06070 -30.82386 -29.11285 -28.32202 -27.67445 -26.63009 -25.49688 -24.03027 -23.24791 -22.36705 -21.98293 -20.62161 -20.42436 -18.77452 -18.28065 -17.73028 -17.49459 -17.37970 -17.08813 -16.82243 -16.29226 -15.99788 -15.68022 -15.60562 -15.08854 -14.87070 -14.69269 -14.34559 -14.08128 -14.00452 -13.92561 -13.67148 -13.43433 -13.34047 -13.30387 -12.95981 -12.94067 -12.85130 -12.65117 -12.42305 -12.27496 -12.14324 -11.97457 -11.85208 -11.56889 -11.41636 -11.27187 -10.88504 -10.34258 -10.32151 -9.98855 -9.90593 -9.01727 -7.97014 -5.31040 0.49291 1.11098 1.44800 1.46982 1.55848 1.56792 2.13032 2.33764 2.40690 2.75923 3.25495 3.32986 3.40484 3.61780 3.66532 3.72287 3.75869 3.95248 3.96690 4.12241 4.23292 4.34257 4.43284 4.50466 4.56024 4.59488 4.61715 4.66945 4.72247 4.80644 4.81074 4.88054 4.94307 4.99677 5.03510 5.07853 5.10430 5.12149 5.15494 5.29898 5.32353 5.38020 5.42070 5.81664 5.88708 6.12581 6.36611 6.84011 6.87211 7.10590 7.52798 8.53254 9.22238 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.002331 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.162389 B =12010.451607 C =13338.575951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.021 3.979 3 C -0.205 4.205 4 C -0.045 4.045 5 C 0.603 3.397 6 O -0.569 6.569 7 N -0.708 5.708 8 C 0.134 3.866 9 C 0.061 3.939 10 H 0.079 0.921 11 C -0.130 4.130 12 C -0.108 4.108 13 C 0.073 3.927 14 C 0.123 3.877 15 N -0.628 5.628 16 C -0.231 4.231 17 H 0.090 0.910 18 C -0.067 4.067 19 N -0.954 5.954 20 Si 0.986 3.014 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.263 1.263 24 C 0.154 3.846 25 O -0.370 6.370 26 N -0.282 5.282 27 N -0.279 5.279 28 C 0.071 3.929 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.165 0.835 33 H 0.412 0.588 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.033 0.967 42 H 0.250 0.750 43 H 0.006 0.994 44 H 0.036 0.964 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.152 9.189 6.247 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C -0.233 4.233 4 C -0.204 4.204 5 C 0.388 3.612 6 O -0.448 6.448 7 N -0.359 5.359 8 C 0.011 3.989 9 C 0.004 3.996 10 H 0.097 0.903 11 C -0.168 4.168 12 C -0.146 4.146 13 C 0.032 3.968 14 C -0.002 4.002 15 N -0.355 5.355 16 C -0.358 4.358 17 H 0.108 0.892 18 C -0.260 4.260 19 N -0.602 5.602 20 Si 0.813 3.187 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.187 1.187 24 C 0.028 3.972 25 O -0.289 6.289 26 N -0.119 5.119 27 N -0.068 5.068 28 C -0.067 4.067 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.182 0.818 33 H 0.247 0.753 34 H 0.120 0.880 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.024 0.976 44 H 0.054 0.946 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.467 8.682 6.093 24.845 hybrid contribution 0.629 -0.914 -0.287 1.146 sum -21.839 7.768 5.805 23.895 Atomic orbital electron populations 1.20540 0.83091 1.05587 1.04660 1.22039 0.97314 0.85625 1.05427 1.21731 0.90148 1.00709 1.10726 1.21846 0.95355 0.90393 1.12777 1.17102 0.82329 0.86129 0.75613 1.90741 1.87437 1.14022 1.52570 1.45849 1.05132 1.11379 1.73511 1.21497 0.80606 0.93058 1.03717 1.23530 0.95381 0.94062 0.86652 0.90321 1.23124 0.91604 0.98556 1.03515 1.22316 0.97714 0.96147 0.98403 1.23423 0.81827 0.94298 0.97244 1.22535 0.93242 0.90330 0.94128 1.45712 1.24006 1.34927 1.30890 1.19349 0.96765 1.04047 1.15650 0.89215 1.25764 1.02551 0.97907 0.99780 1.70062 1.37570 1.22350 1.30265 0.84966 0.78775 0.78271 0.76721 1.21428 1.21794 1.18742 1.22321 0.89564 0.92612 0.92752 1.88756 1.26833 1.76212 1.37066 1.73511 1.03734 1.14559 1.20143 1.45827 1.02051 1.09367 1.49567 1.22621 1.03096 0.74939 1.06035 0.88979 0.88689 0.88523 0.81776 0.75272 0.88021 0.90970 0.87379 0.88506 0.91428 0.89703 0.91660 0.94929 0.94096 0.97600 0.94561 0.88319 0.88399 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.10 71.23 0.72 0.25 16 2 C 0.02 0.34 6.92 41.40 0.29 0.63 16 3 C -0.21 -4.69 10.73 22.41 0.24 -4.45 16 4 C -0.05 -1.27 7.13 42.46 0.30 -0.97 16 5 C 0.60 18.62 7.82 86.75 0.68 19.30 16 6 O -0.57 -20.11 16.93 -3.96 -0.07 -20.18 16 7 N -0.71 -19.89 5.55 -466.08 -2.59 -22.48 16 8 C 0.13 3.40 5.41 86.38 0.47 3.87 16 9 C 0.06 1.67 3.38 31.30 0.11 1.77 16 10 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 11 C -0.13 -3.04 6.60 31.99 0.21 -2.83 16 12 C -0.11 -3.48 6.46 31.40 0.20 -3.28 16 13 C 0.07 2.89 1.66 -10.82 -0.02 2.87 16 14 C 0.12 5.41 8.20 83.40 0.68 6.10 16 15 N -0.63 -33.70 3.73 -739.11 -2.75 -36.45 16 16 C -0.23 -13.19 10.73 84.03 0.90 -12.29 16 17 H 0.09 4.86 7.84 -2.91 -0.02 4.83 16 18 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 19 N -0.95 -58.83 11.82 21.65 0.26 -58.57 16 20 Si 0.99 45.91 29.56 68.60 2.03 47.94 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 23 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 24 C 0.15 7.80 6.73 83.50 0.56 8.36 16 25 O -0.37 -13.31 11.02 -148.98 -1.64 -14.95 16 26 N -0.28 -7.31 11.67 -48.18 -0.56 -7.88 16 27 N -0.28 -5.09 3.70 -355.93 -1.32 -6.41 16 28 C 0.07 0.58 11.11 127.77 1.42 2.00 16 29 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.09 0.11 7.00 -2.39 -0.02 0.09 16 31 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 33 H 0.41 11.56 8.20 -92.71 -0.76 10.80 16 34 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.10 1.96 8.06 -2.39 -0.02 1.94 16 38 H 0.07 2.37 7.82 -2.39 -0.02 2.35 16 39 H 0.08 2.62 7.81 -2.39 -0.02 2.60 16 40 H 0.07 2.59 7.91 -2.39 -0.02 2.57 16 41 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 43 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.04 1.98 7.40 -2.39 -0.02 1.96 16 45 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.13 0.09 6.95 -2.39 -0.02 0.07 16 Total: -1.00 -81.18 390.56 0.81 -80.37 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.22 Total: 20.70 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 7.23 Total: 17.91 kcal Atomic # 7 Polarization: -124.83 SS G_CDS: -6.96 Total: -131.79 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -1.71 Total: -35.13 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -81.18 0.81 -80.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053576942.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.463 kcal (2) G-P(sol) polarization free energy of solvation -81.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds