Wall clock time and date at job start Tue Mar 31 2020 17:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30446 * 125.98893 * 2 1 4 4 N 1.39939 * 108.89697 * 180.26182 * 3 2 1 5 5 C 1.46496 * 125.75329 * 179.73240 * 4 3 2 6 6 C 1.34265 * 108.48787 * 359.73346 * 4 3 2 7 7 C 1.38036 * 107.41940 * 359.97438 * 6 4 3 8 8 C 1.47433 * 126.41421 * 179.97438 * 7 6 4 9 9 O 1.21607 * 119.99994 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00107 * 0.03217 * 8 7 6 11 11 C 1.46490 * 120.00203 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47474 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.82319 * 59.43096 * 12 11 10 14 14 C 1.54471 * 109.91343 * 180.37932 * 12 11 10 15 15 C 1.55499 * 102.39227 * 140.91823 * 14 12 11 16 16 C 1.53881 * 100.76022 * 327.03014 * 15 14 12 17 17 C 1.52378 * 115.67687 * 263.23651 * 16 15 14 18 18 N 1.47276 * 87.70244 * 218.74148 * 17 16 15 19 19 C 1.36936 * 135.93576 * 205.92145 * 18 17 16 20 20 H 1.08005 * 119.99952 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99801 * 180.02562 * 19 18 17 22 22 N 1.31614 * 120.00324 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99953 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47075 * 59.99561 * 23 21 19 25 25 H 1.48493 * 109.47394 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47114 * 300.00060 * 23 21 19 27 27 C 1.47273 * 88.12953 * 26.17582 * 18 17 16 28 28 O 1.42413 * 106.67075 * 34.96969 * 16 15 14 29 29 H 1.08992 * 109.47167 * 270.17394 * 1 2 3 30 30 H 1.08996 * 109.46779 * 30.18040 * 1 2 3 31 31 H 1.09001 * 109.46724 * 150.17406 * 1 2 3 32 32 H 1.08995 * 109.47125 * 269.99790 * 5 4 3 33 33 H 1.08998 * 109.46989 * 30.00470 * 5 4 3 34 34 H 1.09008 * 109.46605 * 150.00017 * 5 4 3 35 35 H 1.08002 * 126.28810 * 179.97438 * 6 4 3 36 36 H 0.97001 * 119.99516 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.47433 * 59.99569 * 11 10 8 38 38 H 1.09000 * 109.47239 * 299.99952 * 11 10 8 39 39 H 1.09003 * 110.81511 * 259.14403 * 14 12 11 40 40 H 1.08997 * 110.82218 * 22.49347 * 14 12 11 41 41 H 1.08997 * 111.16294 * 209.14843 * 15 14 12 42 42 H 1.09004 * 111.15839 * 84.90192 * 15 14 12 43 43 H 1.09001 * 113.51593 * 104.03916 * 17 16 15 44 44 H 1.08996 * 113.51236 * 333.44916 * 17 16 15 45 45 H 0.97007 * 120.00452 * 180.02562 * 22 21 19 46 46 H 1.08999 * 113.51652 * 88.52643 * 27 18 17 47 47 H 1.08999 * 113.51521 * 219.11206 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6112 0.6442 -0.0060 5 6 4.7787 1.5290 -0.0135 6 6 3.6439 -0.6980 -0.0039 7 6 2.3373 -1.1432 0.0041 8 6 1.8916 -2.5486 0.0086 9 8 0.7039 -2.8097 0.0152 10 7 2.8004 -3.5438 0.0054 11 6 2.3575 -4.9402 0.0104 12 6 3.5783 -5.8625 0.0060 13 1 4.1920 -5.6675 0.8855 14 6 3.1225 -7.3385 0.0016 15 6 4.1496 -8.0019 -0.9591 16 6 4.4102 -6.8475 -1.9427 17 6 3.6036 -6.8862 -3.2349 18 7 4.8094 -6.4078 -3.9322 19 6 5.0696 -5.7051 -5.0784 20 1 4.2547 -5.3693 -5.7026 21 6 6.3807 -5.4253 -5.4384 22 7 7.3737 -5.8350 -4.6779 23 14 6.7357 -4.4673 -7.0023 24 1 6.0929 -3.1311 -6.9209 25 1 8.2030 -4.3016 -7.1590 26 1 6.1931 -5.2072 -8.1699 27 6 5.6133 -7.0211 -2.8615 28 8 4.3498 -5.6434 -1.1846 29 1 -0.3633 0.0031 1.0276 30 1 -0.3633 0.8883 -0.5166 31 1 -0.3633 -0.8916 -0.5111 32 1 5.0631 1.7466 -1.0430 33 1 4.5334 2.4586 0.5000 34 1 5.6084 1.0399 0.4970 35 1 4.5298 -1.3159 -0.0076 36 1 3.7477 -3.3355 -0.0001 37 1 1.7530 -5.1328 -0.8759 38 1 1.7628 -5.1296 0.9039 39 1 3.1927 -7.7685 1.0008 40 1 2.1084 -7.4297 -0.3874 41 1 3.7138 -8.8617 -1.4681 42 1 5.0605 -8.2808 -0.4295 43 1 2.7788 -6.1739 -3.2542 44 1 3.3013 -7.8913 -3.5288 45 1 8.2899 -5.6392 -4.9293 46 1 5.8682 -8.0637 -3.0518 47 1 6.4752 -6.4222 -2.5673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053582692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:04 Heat of formation + Delta-G solvation = 32.199818 kcal Electronic energy + Delta-G solvation = -29141.000452 eV Core-core repulsion = 25133.661669 eV Total energy + Delta-G solvation = -4007.338783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.44273 -41.43888 -40.07756 -38.06964 -35.62727 -34.89255 -34.14221 -33.09574 -31.97936 -30.50032 -30.28367 -28.63673 -26.86981 -26.50337 -25.36984 -23.62217 -22.95049 -22.44166 -21.29624 -20.73004 -20.42435 -18.76978 -18.69517 -17.66962 -17.07274 -16.91740 -16.77841 -16.65407 -16.22919 -15.82240 -15.59104 -15.35830 -15.20293 -14.83278 -14.64286 -14.36742 -14.17472 -14.07644 -13.99620 -13.55404 -13.39961 -13.15092 -13.09882 -13.02383 -12.95806 -12.80396 -12.66748 -12.50893 -12.29323 -12.13242 -11.95073 -11.61428 -11.29806 -11.20909 -10.93951 -10.86037 -10.40411 -10.21481 -10.11370 -9.61676 -8.91256 -7.90332 -5.22376 0.48494 1.07065 1.42650 1.42999 1.46058 1.52239 2.25223 2.46117 2.46510 2.84424 3.31474 3.36287 3.46904 3.57855 3.67941 3.80807 3.89971 3.99000 4.04318 4.21865 4.28348 4.37880 4.39043 4.43948 4.51697 4.63308 4.65758 4.66893 4.74573 4.74724 4.86899 4.95106 4.95452 4.96888 5.01840 5.04371 5.15450 5.23557 5.32456 5.37122 5.47261 5.52310 5.52876 5.85313 5.93543 6.41574 6.47040 6.65913 6.91426 7.30880 7.59603 8.60998 9.27049 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008930 B = 0.003675 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.914190 B = 7617.019399 C = 9696.413530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.114 3.886 3 N -0.329 5.329 4 N -0.359 5.359 5 C 0.085 3.915 6 C 0.118 3.882 7 C -0.320 4.320 8 C 0.592 3.408 9 O -0.582 6.582 10 N -0.713 5.713 11 C 0.119 3.881 12 C 0.061 3.939 13 H 0.107 0.893 14 C -0.133 4.133 15 C -0.128 4.128 16 C 0.082 3.918 17 C 0.102 3.898 18 N -0.637 5.637 19 C -0.232 4.232 20 H 0.075 0.925 21 C -0.061 4.061 22 N -0.949 5.949 23 Si 0.976 3.024 24 H -0.281 1.281 25 H -0.288 1.288 26 H -0.278 1.278 27 C 0.159 3.841 28 O -0.362 6.362 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.216 0.784 36 H 0.408 0.592 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.034 0.966 44 H 0.061 0.939 45 H 0.249 0.751 46 H 0.038 0.962 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.951 5.714 16.927 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.052 4.052 3 N -0.152 5.152 4 N -0.136 5.136 5 C -0.054 4.054 6 C -0.035 4.035 7 C -0.335 4.335 8 C 0.381 3.619 9 O -0.464 6.464 10 N -0.364 5.364 11 C -0.005 4.005 12 C 0.004 3.996 13 H 0.124 0.876 14 C -0.171 4.171 15 C -0.167 4.167 16 C 0.041 3.959 17 C -0.023 4.023 18 N -0.363 5.363 19 C -0.360 4.360 20 H 0.093 0.907 21 C -0.254 4.254 22 N -0.598 5.598 23 Si 0.804 3.196 24 H -0.207 1.207 25 H -0.214 1.214 26 H -0.204 1.204 27 C 0.034 3.966 28 O -0.281 6.281 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.141 0.859 35 H 0.233 0.767 36 H 0.244 0.756 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.135 0.865 40 H 0.103 0.897 41 H 0.116 0.884 42 H 0.110 0.890 43 H 0.052 0.948 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.312 7.284 16.615 19.208 hybrid contribution 0.851 -0.379 -1.382 1.667 sum -5.461 6.905 15.233 17.594 Atomic orbital electron populations 1.20300 0.85093 1.03715 1.03929 1.22761 0.98083 0.89034 0.95359 1.77096 0.87314 1.22992 1.27758 1.48689 1.06307 1.05392 1.53259 1.22421 0.82969 0.94783 1.05188 1.23603 0.99242 0.85627 0.95018 1.20314 0.93415 0.93940 1.25835 1.17434 0.85237 0.84265 0.75011 1.90684 1.17617 1.84919 1.53179 1.45661 1.10014 1.05852 1.74836 1.21780 0.96586 0.79974 1.02146 1.23335 0.91670 0.95786 0.88817 0.87562 1.23085 0.99777 0.91941 1.02252 1.22955 1.00552 0.97051 0.96122 1.22914 0.96978 0.85188 0.90866 1.22968 0.91091 0.97402 0.90847 1.45837 1.03910 1.61394 1.25188 1.19209 0.92348 1.26212 0.98220 0.90680 1.25539 0.95086 1.02646 1.02176 1.69994 0.98168 1.51730 1.39894 0.85199 0.76582 0.78502 0.79317 1.20716 1.21408 1.20361 1.22068 0.94483 0.95212 0.84882 1.88339 1.72065 1.33313 1.34339 0.89328 0.89995 0.90245 0.89402 0.88061 0.85876 0.76741 0.75619 0.93470 0.88946 0.86503 0.89687 0.88423 0.88998 0.94764 0.92183 0.94204 0.94454 0.94292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.77 9.92 71.24 0.71 -1.06 16 2 C 0.11 3.26 7.26 43.52 0.32 3.57 16 3 N -0.33 -8.96 12.50 -46.67 -0.58 -9.54 16 4 N -0.36 -7.64 3.98 -367.79 -1.46 -9.11 16 5 C 0.09 0.95 11.44 127.77 1.46 2.41 16 6 C 0.12 2.54 10.99 84.27 0.93 3.47 16 7 C -0.32 -8.94 6.13 -20.15 -0.12 -9.06 16 8 C 0.59 18.18 7.81 86.67 0.68 18.86 16 9 O -0.58 -21.09 14.92 -4.05 -0.06 -21.15 16 10 N -0.71 -18.90 5.46 -466.38 -2.55 -21.45 16 11 C 0.12 2.99 5.24 86.38 0.45 3.44 16 12 C 0.06 1.43 3.61 31.09 0.11 1.55 16 13 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 14 C -0.13 -2.43 6.56 31.95 0.21 -2.22 16 15 C -0.13 -3.06 6.49 31.75 0.21 -2.85 16 16 C 0.08 2.95 1.55 -10.91 -0.02 2.93 16 17 C 0.10 4.28 8.25 83.48 0.69 4.97 16 18 N -0.64 -34.09 3.79 -740.55 -2.81 -36.90 16 19 C -0.23 -13.64 10.74 84.03 0.90 -12.73 16 20 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 21 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 22 N -0.95 -57.84 11.52 21.65 0.25 -57.59 16 23 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 24 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 27 C 0.16 7.57 6.95 83.47 0.58 8.15 16 28 O -0.36 -12.78 10.68 -148.98 -1.59 -14.37 16 29 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 2.22 6.56 -2.39 -0.02 2.20 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.22 3.01 7.46 -2.91 -0.02 2.99 16 36 H 0.41 9.52 7.32 -92.71 -0.68 8.84 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 1.50 7.85 -2.39 -0.02 1.49 16 41 H 0.10 2.07 7.93 -2.39 -0.02 2.05 16 42 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.06 2.27 7.98 -2.39 -0.02 2.25 16 45 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 46 H 0.04 1.75 8.13 -2.39 -0.02 1.73 16 47 H 0.04 2.12 7.17 -2.39 -0.02 2.11 16 Total: -1.00 -83.55 388.27 1.10 -82.45 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.30 Total: 20.57 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 7.57 Total: 18.32 kcal Atomic # 7 Polarization: -127.44 SS G_CDS: -7.15 Total: -134.59 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -1.65 Total: -35.52 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -83.55 1.10 -82.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053582692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.653 kcal (2) G-P(sol) polarization free energy of solvation -83.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds