Wall clock time and date at job start Tue Mar 31 2020 17:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30444 * 125.99340 * 2 1 4 4 N 1.39935 * 108.89893 * 180.26119 * 3 2 1 5 5 C 1.46502 * 125.74885 * 179.77504 * 4 3 2 6 6 C 1.34252 * 108.49379 * 359.75404 * 4 3 2 7 7 C 1.38041 * 107.41585 * 359.97438 * 6 4 3 8 8 C 1.47434 * 126.41757 * 179.97438 * 7 6 4 9 9 O 1.21602 * 120.00514 * 180.02562 * 8 7 6 10 10 N 1.34779 * 119.99605 * 0.02587 * 8 7 6 11 11 C 1.46497 * 120.00149 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47340 * 180.02562 * 11 10 8 13 13 H 1.09000 * 110.52387 * 307.79546 * 12 11 10 14 14 C 1.55061 * 110.58676 * 185.00022 * 12 11 10 15 15 C 1.55023 * 102.13348 * 204.93575 * 14 12 11 16 16 C 1.53324 * 103.78694 * 20.86322 * 15 14 12 17 17 C 1.52644 * 115.56381 * 133.64309 * 16 15 14 18 18 N 1.47229 * 87.78111 * 90.04653 * 17 16 15 19 19 C 1.36929 * 135.96928 * 206.41470 * 18 17 16 20 20 H 1.08006 * 119.99870 * 7.80348 * 19 18 17 21 21 C 1.38816 * 120.00238 * 187.80548 * 19 18 17 22 22 N 1.31613 * 119.99924 * 195.33338 * 21 19 18 23 23 Si 1.86798 * 119.99528 * 15.32917 * 21 19 18 24 24 H 1.48501 * 109.47162 * 269.99583 * 23 21 19 25 25 H 1.48507 * 109.46522 * 150.00004 * 23 21 19 26 26 H 1.48498 * 109.47295 * 30.00249 * 23 21 19 27 27 C 1.47221 * 88.06476 * 26.66859 * 18 17 16 28 28 O 1.42845 * 108.32768 * 1.60407 * 16 15 14 29 29 H 1.09004 * 109.47302 * 270.14329 * 1 2 3 30 30 H 1.08996 * 109.47164 * 30.14692 * 1 2 3 31 31 H 1.09001 * 109.47181 * 150.14019 * 1 2 3 32 32 H 1.08993 * 109.46940 * 269.97108 * 5 4 3 33 33 H 1.09004 * 109.47516 * 29.97949 * 5 4 3 34 34 H 1.09004 * 109.46606 * 149.97734 * 5 4 3 35 35 H 1.07993 * 126.29071 * 179.97438 * 6 4 3 36 36 H 0.97007 * 120.00114 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.46946 * 60.00254 * 11 10 8 38 38 H 1.08999 * 109.47092 * 300.00525 * 11 10 8 39 39 H 1.09000 * 110.87112 * 86.77724 * 14 12 11 40 40 H 1.08999 * 110.86861 * 323.09760 * 14 12 11 41 41 H 1.09001 * 110.56238 * 262.28898 * 15 14 12 42 42 H 1.08995 * 110.69137 * 139.49727 * 15 14 12 43 43 H 1.09001 * 113.50036 * 335.32317 * 17 16 15 44 44 H 1.09001 * 113.56148 * 204.78134 * 17 16 15 45 45 H 0.97000 * 120.00254 * 354.90242 * 22 21 19 46 46 H 1.08998 * 113.49938 * 88.05938 * 27 18 17 47 47 H 1.08996 * 113.50607 * 218.60684 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6441 -0.0060 5 6 4.7787 1.5289 -0.0126 6 6 3.6439 -0.6980 -0.0043 7 6 2.3373 -1.1433 0.0034 8 6 1.8914 -2.5486 0.0073 9 8 0.7038 -2.8098 0.0137 10 7 2.8003 -3.5438 0.0038 11 6 2.3574 -4.9402 0.0082 12 6 3.5781 -5.8625 0.0036 13 1 4.2561 -5.5950 -0.8069 14 6 3.1409 -7.3451 -0.1184 15 6 4.3356 -8.0915 0.5289 16 6 5.0119 -7.0196 1.3916 17 6 5.3762 -7.4492 2.8103 18 7 6.6810 -7.8816 2.2830 19 6 7.6280 -8.8058 2.6353 20 1 7.4247 -9.5125 3.4264 21 6 8.8492 -8.8343 1.9759 22 7 9.6341 -9.8846 2.0898 23 14 9.3783 -7.3821 0.9270 24 1 8.9028 -7.5784 -0.4661 25 1 10.8598 -7.2797 0.9346 26 1 8.7930 -6.1337 1.4786 27 6 6.5248 -6.8809 1.2146 28 8 4.2592 -5.8108 1.2782 29 1 -0.3634 0.0026 1.0277 30 1 -0.3633 0.8886 -0.5161 31 1 -0.3633 -0.8912 -0.5117 32 1 5.0635 1.7468 -1.0419 33 1 4.5331 2.4585 0.5011 34 1 5.6081 1.0397 0.4981 35 1 4.5297 -1.3158 -0.0082 36 1 3.7477 -3.3355 -0.0009 37 1 1.7530 -5.1325 -0.8782 38 1 1.7626 -5.1299 0.9017 39 1 3.0249 -7.6310 -1.1638 40 1 2.2219 -7.5261 0.4391 41 1 5.0206 -8.4546 -0.2373 42 1 3.9842 -8.9162 1.1488 43 1 4.7656 -8.2702 3.1862 44 1 5.4451 -6.6187 3.5130 45 1 9.3944 -10.6064 2.6919 46 1 6.9052 -5.8954 1.4832 47 1 6.8835 -7.2220 0.2435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053582693.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:09 Heat of formation + Delta-G solvation = 31.463316 kcal Electronic energy + Delta-G solvation = -28667.693648 eV Core-core repulsion = 24660.322928 eV Total energy + Delta-G solvation = -4007.370720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.41738 -41.58825 -40.11776 -38.34747 -35.71803 -34.87442 -34.46875 -33.13300 -31.99014 -30.56195 -30.28652 -28.70257 -27.11948 -26.80581 -25.04887 -23.44811 -23.03074 -22.34153 -21.31763 -20.75535 -20.65957 -19.46715 -18.73335 -17.73756 -17.40107 -16.98820 -16.80906 -16.64673 -16.16746 -16.09413 -15.64592 -15.40596 -15.30085 -15.11464 -14.71001 -14.48031 -14.36615 -14.10194 -14.02311 -13.52122 -13.44343 -13.37692 -13.16917 -13.00074 -12.94421 -12.65100 -12.58077 -12.42009 -12.21406 -12.01836 -11.90810 -11.73995 -11.43931 -11.35420 -10.88089 -10.84133 -10.38105 -10.34221 -10.12142 -9.59509 -9.27464 -8.63892 -5.48494 0.52629 1.09974 1.39077 1.46147 1.52204 1.67341 2.26563 2.47197 2.53678 2.61487 3.08897 3.18084 3.39034 3.44187 3.64208 3.67496 3.72689 3.97056 4.07089 4.16262 4.22155 4.40825 4.42035 4.44610 4.49375 4.50398 4.55982 4.64957 4.67303 4.70997 4.72050 4.76495 4.85450 4.88560 4.97040 4.98576 5.01171 5.02870 5.14833 5.17207 5.28063 5.47492 5.53639 5.89214 5.93698 6.05771 6.50147 6.68035 6.68107 7.30614 7.33044 8.25035 8.88018 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.002678 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.067490 B =10451.352343 C =11854.561758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.114 3.886 3 N -0.332 5.332 4 N -0.360 5.360 5 C 0.085 3.915 6 C 0.121 3.879 7 C -0.320 4.320 8 C 0.595 3.405 9 O -0.581 6.581 10 N -0.716 5.716 11 C 0.137 3.863 12 C 0.062 3.938 13 H 0.095 0.905 14 C -0.134 4.134 15 C -0.116 4.116 16 C 0.088 3.912 17 C 0.121 3.879 18 N -0.645 5.645 19 C -0.290 4.290 20 H 0.050 0.950 21 C -0.082 4.082 22 N -0.966 5.966 23 Si 1.101 2.899 24 H -0.271 1.271 25 H -0.302 1.302 26 H -0.255 1.255 27 C 0.087 3.913 28 O -0.362 6.362 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.223 0.777 36 H 0.411 0.589 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.247 0.753 46 H 0.057 0.943 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.534 21.486 -9.551 27.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 N -0.155 5.155 4 N -0.137 5.137 5 C -0.054 4.054 6 C -0.032 4.032 7 C -0.335 4.335 8 C 0.384 3.616 9 O -0.462 6.462 10 N -0.367 5.367 11 C 0.013 3.987 12 C 0.005 3.995 13 H 0.113 0.887 14 C -0.172 4.172 15 C -0.154 4.154 16 C 0.047 3.953 17 C -0.005 4.005 18 N -0.375 5.375 19 C -0.418 4.418 20 H 0.068 0.932 21 C -0.274 4.274 22 N -0.611 5.611 23 Si 0.925 3.075 24 H -0.197 1.197 25 H -0.230 1.230 26 H -0.180 1.180 27 C -0.039 4.039 28 O -0.280 6.280 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.139 0.861 35 H 0.239 0.761 36 H 0.247 0.753 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.127 0.873 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.074 0.926 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.881 23.235 -10.316 28.965 hybrid contribution -0.172 -2.005 1.729 2.653 sum -14.052 21.230 -8.587 26.868 Atomic orbital electron populations 1.20300 0.85343 1.03896 1.03647 1.22745 0.97980 0.89216 0.95364 1.77131 0.87469 1.23128 1.27789 1.48700 1.06199 1.05588 1.53174 1.22417 0.82890 0.94622 1.05445 1.23671 0.99254 0.85476 0.94815 1.20286 0.93398 0.93782 1.26047 1.17381 0.85165 0.84154 0.74936 1.90710 1.17778 1.84863 1.52891 1.45678 1.10157 1.05566 1.75302 1.21350 0.95044 0.79117 1.03177 1.23592 0.93408 0.95676 0.86852 0.88675 1.23142 0.98022 0.92560 1.03472 1.22391 0.97229 0.97132 0.98647 1.23111 0.90126 0.85500 0.96595 1.22574 0.86282 0.96842 0.94781 1.45915 1.20945 1.39719 1.30924 1.19922 0.94967 1.07269 1.19620 0.93250 1.27118 0.92803 1.04187 1.03308 1.71012 1.42898 1.08181 1.38975 0.83338 0.75000 0.73715 0.75435 1.19735 1.23047 1.18005 1.23298 0.94966 0.92908 0.92680 1.88764 1.63266 1.38305 1.37645 0.90072 0.89991 0.89771 0.88616 0.88725 0.86078 0.76056 0.75288 0.88690 0.91843 0.87272 0.89262 0.90666 0.90628 0.92888 0.93591 0.94384 0.92587 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 9.92 71.23 0.71 -0.75 16 2 C 0.11 2.59 7.26 43.52 0.32 2.91 16 3 N -0.33 -7.29 12.50 -46.68 -0.58 -7.87 16 4 N -0.36 -5.41 3.98 -367.79 -1.46 -6.87 16 5 C 0.09 0.47 11.44 127.77 1.46 1.93 16 6 C 0.12 1.68 10.99 84.28 0.93 2.60 16 7 C -0.32 -6.67 6.13 -20.15 -0.12 -6.80 16 8 C 0.59 13.84 7.81 86.67 0.68 14.51 16 9 O -0.58 -17.27 14.92 -4.04 -0.06 -17.33 16 10 N -0.72 -13.02 5.54 -466.38 -2.59 -15.60 16 11 C 0.14 2.51 5.41 86.38 0.47 2.98 16 12 C 0.06 1.18 3.38 31.30 0.11 1.28 16 13 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 14 C -0.13 -2.43 6.60 31.99 0.21 -2.22 16 15 C -0.12 -3.13 6.46 31.40 0.20 -2.93 16 16 C 0.09 2.80 1.66 -10.82 -0.02 2.78 16 17 C 0.12 4.69 8.20 83.40 0.68 5.37 16 18 N -0.65 -30.72 3.58 -739.06 -2.65 -33.37 16 19 C -0.29 -16.72 11.03 84.04 0.93 -15.79 16 20 H 0.05 3.09 8.06 -2.91 -0.02 3.06 16 21 C -0.08 -4.82 5.50 84.86 0.47 -4.36 16 22 N -0.97 -61.63 13.70 21.65 0.30 -61.33 16 23 Si 1.10 51.43 25.51 68.60 1.75 53.18 16 24 H -0.27 -11.60 6.97 99.48 0.69 -10.91 16 25 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 26 H -0.26 -10.69 5.65 99.48 0.56 -10.13 16 27 C 0.09 3.35 5.12 83.50 0.43 3.78 16 28 O -0.36 -9.69 11.02 -148.98 -1.64 -11.33 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.86 6.56 -2.39 -0.02 1.84 16 32 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.22 1.08 7.46 -2.91 -0.02 1.06 16 36 H 0.41 5.56 7.40 -92.70 -0.69 4.87 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 1.50 8.05 -2.39 -0.02 1.48 16 41 H 0.07 2.13 7.82 -2.39 -0.02 2.11 16 42 H 0.08 2.14 7.81 -2.39 -0.02 2.12 16 43 H 0.05 2.00 7.91 -2.39 -0.02 1.98 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.25 15.86 8.73 -92.71 -0.81 15.05 16 46 H 0.06 2.13 6.98 -2.39 -0.02 2.11 16 47 H 0.05 2.08 6.08 -2.39 -0.01 2.06 16 Total: -1.00 -81.66 381.69 0.61 -81.05 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.10 Total: 14.17 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 7.44 Total: 5.30 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -6.99 Total: -125.05 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -1.70 Total: -28.66 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 1.75 Total: 53.18 kcal Total: -81.66 0.61 -81.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053582693.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.516 kcal (2) G-P(sol) polarization free energy of solvation -81.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds