Wall clock time and date at job start Tue Mar 31 2020 18:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30449 * 125.98649 * 2 1 4 4 N 1.39938 * 108.89393 * 180.26202 * 3 2 1 5 5 H 0.97002 * 125.75193 * 179.73313 * 4 3 2 6 6 C 1.34261 * 108.49334 * 359.75350 * 4 3 2 7 7 C 1.50699 * 126.29093 * 180.02562 * 6 4 3 8 8 C 1.38045 * 107.41417 * 359.97438 * 6 4 3 9 9 C 1.47429 * 126.40930 * 179.97438 * 8 6 4 10 10 O 1.21604 * 120.00018 * 90.00504 * 9 8 6 11 11 N 1.34779 * 119.99925 * 269.99779 * 9 8 6 12 12 C 1.46497 * 119.99883 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.47085 * 180.02562 * 12 11 9 14 14 H 1.09000 * 110.51766 * 307.79390 * 13 12 11 15 15 C 1.55059 * 110.58197 * 184.99868 * 13 12 11 16 16 C 1.55030 * 102.12935 * 204.93083 * 15 13 12 17 17 C 1.53322 * 103.78366 * 20.86698 * 16 15 13 18 18 C 1.52652 * 115.56243 * 133.64213 * 17 16 15 19 19 N 1.47222 * 87.77949 * 90.04529 * 18 17 16 20 20 C 1.36932 * 135.96431 * 206.41651 * 19 18 17 21 21 H 1.08004 * 120.00066 * 6.79093 * 20 19 18 22 22 C 1.38808 * 119.99884 * 186.79269 * 20 19 18 23 23 N 1.31629 * 119.99858 * 172.34298 * 22 20 19 24 24 Si 1.86797 * 120.00274 * 352.34104 * 22 20 19 25 25 H 1.48502 * 109.47471 * 175.35206 * 24 22 20 26 26 H 1.48504 * 109.47042 * 55.35242 * 24 22 20 27 27 H 1.48501 * 109.47081 * 295.35483 * 24 22 20 28 28 C 1.47219 * 88.06699 * 26.66772 * 19 18 17 29 29 O 1.42842 * 108.32807 * 1.60437 * 17 16 15 30 30 H 1.08997 * 109.46920 * 270.14170 * 1 2 3 31 31 H 1.08999 * 109.47126 * 30.14695 * 1 2 3 32 32 H 1.09000 * 109.47099 * 150.14283 * 1 2 3 33 33 H 1.09001 * 109.46884 * 269.96896 * 7 6 4 34 34 H 1.08999 * 109.47365 * 29.96908 * 7 6 4 35 35 H 1.08999 * 109.47188 * 149.97217 * 7 6 4 36 36 H 0.96994 * 119.99774 * 0.02562 * 11 9 8 37 37 H 1.09002 * 109.47350 * 60.00170 * 12 11 9 38 38 H 1.09006 * 109.47215 * 300.00587 * 12 11 9 39 39 H 1.09008 * 110.87007 * 86.77543 * 15 13 12 40 40 H 1.08998 * 111.05506 * 323.17713 * 15 13 12 41 41 H 1.08993 * 110.56812 * 262.29252 * 16 15 13 42 42 H 1.08997 * 110.68568 * 139.49791 * 16 15 13 43 43 H 1.09002 * 113.50148 * 335.31600 * 18 17 16 44 44 H 1.09005 * 113.56183 * 204.78256 * 18 17 16 45 45 H 0.96991 * 120.00047 * 4.89162 * 23 22 20 46 46 H 1.09004 * 113.49685 * 88.06070 * 28 19 18 47 47 H 1.08993 * 113.49991 * 218.60291 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 -0.0061 5 1 4.3841 1.2301 -0.0110 6 6 3.6439 -0.6980 -0.0043 7 6 4.8800 -1.5600 -0.0087 8 6 2.3372 -1.1432 0.0034 9 6 1.8916 -2.5485 0.0073 10 8 1.7136 -3.1270 1.0620 11 7 1.6814 -3.1920 -1.1581 12 6 1.2380 -4.5883 -1.1542 13 6 1.0765 -5.0761 -2.5954 14 1 0.4448 -4.3919 -3.1618 15 6 0.4882 -6.5105 -2.6227 16 6 0.9963 -7.0452 -3.9863 17 6 2.1922 -6.1419 -4.3102 18 6 3.4512 -6.8616 -4.7867 19 7 2.9424 -6.7207 -6.1610 20 6 3.0953 -7.3976 -7.3415 21 1 3.6380 -8.3311 -7.3624 22 6 2.5527 -6.8838 -8.5113 23 7 2.8250 -7.4509 -9.6676 24 14 1.4361 -5.3878 -8.4448 25 1 1.0821 -4.9724 -9.8259 26 1 2.1399 -4.2749 -7.7582 27 1 0.1985 -5.7267 -7.6972 28 6 2.2025 -5.5299 -5.7118 29 8 2.3676 -5.2242 -3.2296 30 1 -0.3633 0.0025 1.0276 31 1 -0.3633 0.8886 -0.5161 32 1 -0.3633 -0.8913 -0.5116 33 1 5.1730 -1.7697 -1.0374 34 1 5.6896 -1.0369 0.5003 35 1 4.6714 -2.4969 0.5079 36 1 1.8236 -2.7307 -1.9994 37 1 0.2826 -4.6647 -0.6352 38 1 1.9791 -5.2034 -0.6436 39 1 -0.6012 -6.4840 -2.5976 40 1 0.8793 -7.1098 -1.8005 41 1 0.2238 -6.9454 -4.7486 42 1 1.3141 -8.0841 -3.8983 43 1 3.5140 -7.8965 -4.4503 44 1 4.3687 -6.3022 -4.6034 45 1 3.3461 -8.2684 -9.6960 46 1 2.7804 -4.6081 -5.7794 47 1 1.2113 -5.4408 -6.1563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053681269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:55 Heat of formation + Delta-G solvation = 21.341413 kcal Electronic energy + Delta-G solvation = -28983.025851 eV Core-core repulsion = 24975.216212 eV Total energy + Delta-G solvation = -4007.809639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.48447 -41.61304 -40.18611 -38.37100 -35.63615 -34.55280 -34.47633 -33.16207 -32.72025 -30.85455 -29.35765 -28.70321 -28.06823 -27.20749 -25.25893 -23.45478 -22.92450 -22.31866 -21.20666 -20.80096 -20.60184 -19.50744 -18.83147 -17.79975 -17.54366 -17.37962 -17.08238 -16.28361 -16.15051 -16.04084 -15.78433 -15.33019 -15.11242 -14.88452 -14.78829 -14.44597 -14.25621 -14.24071 -13.98144 -13.54387 -13.42124 -13.37899 -13.33636 -13.17336 -12.96728 -12.71491 -12.64602 -12.39109 -12.23018 -12.01161 -11.88862 -11.71520 -11.41995 -11.31661 -11.02435 -11.01514 -10.41102 -10.31290 -10.09198 -9.69174 -9.23665 -8.68060 -5.50206 0.66569 1.35876 1.37049 1.47205 1.54865 1.66871 1.73124 2.33395 2.52567 2.61508 2.98130 3.24604 3.43062 3.49999 3.61518 3.64548 3.68030 3.95618 4.00364 4.13248 4.16856 4.32260 4.42868 4.45872 4.52444 4.59530 4.63577 4.64342 4.70278 4.71584 4.72559 4.84924 4.86591 4.89061 4.95060 4.99716 5.01847 5.02557 5.12969 5.15782 5.26960 5.42208 5.45786 5.92033 6.04287 6.24015 6.52781 6.55056 6.66913 7.22304 7.28807 8.22854 8.87981 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015308 B = 0.002739 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.633684 B =10221.502220 C =10687.179952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.109 3.891 3 N -0.320 5.320 4 N -0.453 5.453 5 H 0.456 0.544 6 C 0.144 3.856 7 C -0.100 4.100 8 C -0.316 4.316 9 C 0.607 3.393 10 O -0.577 6.577 11 N -0.707 5.707 12 C 0.133 3.867 13 C 0.060 3.940 14 H 0.091 0.909 15 C -0.133 4.133 16 C -0.118 4.118 17 C 0.087 3.913 18 C 0.126 3.874 19 N -0.648 5.648 20 C -0.289 4.289 21 H 0.053 0.947 22 C -0.083 4.083 23 N -0.969 5.969 24 Si 1.106 2.894 25 H -0.304 1.304 26 H -0.264 1.264 27 H -0.266 1.266 28 C 0.081 3.919 29 O -0.361 6.361 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.412 0.588 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.247 0.753 46 H 0.050 0.950 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.741 14.502 23.550 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.059 4.059 3 N -0.143 5.143 4 N -0.160 5.160 5 H 0.303 0.697 6 C 0.010 3.990 7 C -0.158 4.158 8 C -0.331 4.331 9 C 0.393 3.607 10 O -0.457 6.457 11 N -0.358 5.358 12 C 0.010 3.990 13 C 0.003 3.997 14 H 0.109 0.891 15 C -0.171 4.171 16 C -0.156 4.156 17 C 0.046 3.954 18 C 0.001 3.999 19 N -0.379 5.379 20 C -0.417 4.417 21 H 0.071 0.929 22 C -0.274 4.274 23 N -0.614 5.614 24 Si 0.932 3.068 25 H -0.232 1.232 26 H -0.189 1.189 27 H -0.192 1.192 28 C -0.044 4.044 29 O -0.279 6.279 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.098 0.902 36 H 0.247 0.753 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.068 0.932 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.460 16.379 23.239 28.779 hybrid contribution 1.856 -1.958 -0.193 2.705 sum -2.604 14.421 23.046 27.311 Atomic orbital electron populations 1.20356 0.84730 1.04513 1.04107 1.22710 0.98057 0.88604 0.96482 1.77042 0.87171 1.22708 1.27420 1.46007 1.07549 1.04853 1.57640 0.69676 1.21773 0.96515 0.85378 0.95312 1.20704 0.91740 0.98156 1.05231 1.19927 0.93268 0.93837 1.26055 1.17330 0.75620 0.84668 0.83125 1.90760 1.53336 1.68945 1.32619 1.45955 1.67812 1.13297 1.08696 1.21445 1.01584 0.81387 0.94619 1.23598 0.85098 0.98050 0.92949 0.89097 1.23141 1.02998 0.94332 0.96600 1.22416 0.95546 0.99457 0.98132 1.23158 0.96724 0.89988 0.85513 1.22540 0.95484 0.98657 0.83233 1.45722 1.55734 1.29828 1.06602 1.19950 1.32905 1.03660 0.85142 0.92902 1.27065 1.02672 1.07452 0.90248 1.71028 1.43996 1.21207 1.25205 0.83294 0.75493 0.73497 0.74482 1.23234 1.18935 1.19212 1.23374 0.96150 0.91371 0.93479 1.88760 1.30619 1.63741 1.44806 0.89516 0.89166 0.89721 0.88009 0.87676 0.90246 0.75259 0.88360 0.91279 0.87232 0.88911 0.90782 0.90202 0.92520 0.93465 0.94374 0.93215 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.28 71.24 0.73 -0.42 16 2 C 0.11 2.20 7.26 43.51 0.32 2.51 16 3 N -0.32 -6.59 12.63 -46.68 -0.59 -7.18 16 4 N -0.45 -6.86 7.29 -46.79 -0.34 -7.20 16 5 H 0.46 3.65 8.96 -213.42 -1.91 1.74 16 6 C 0.14 2.39 7.29 42.14 0.31 2.69 16 7 C -0.10 -1.10 10.25 71.24 0.73 -0.37 16 8 C -0.32 -6.59 5.88 -20.15 -0.12 -6.71 16 9 C 0.61 13.83 6.98 86.66 0.60 14.43 16 10 O -0.58 -17.25 17.11 -4.04 -0.07 -17.32 16 11 N -0.71 -13.18 5.55 -466.35 -2.59 -15.77 16 12 C 0.13 2.36 5.41 86.38 0.47 2.83 16 13 C 0.06 1.15 3.38 31.30 0.11 1.26 16 14 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 15 C -0.13 -2.33 6.60 31.99 0.21 -2.12 16 16 C -0.12 -3.12 6.46 31.40 0.20 -2.91 16 17 C 0.09 2.80 1.66 -10.82 -0.02 2.78 16 18 C 0.13 4.87 8.20 83.40 0.68 5.56 16 19 N -0.65 -31.14 3.66 -739.09 -2.70 -33.84 16 20 C -0.29 -16.78 11.08 84.03 0.93 -15.84 16 21 H 0.05 3.30 8.05 -2.91 -0.02 3.28 16 22 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 23 N -0.97 -62.51 13.70 21.65 0.30 -62.22 16 24 Si 1.11 52.75 25.13 68.60 1.72 54.47 16 25 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 26 H -0.26 -11.48 6.11 99.48 0.61 -10.88 16 27 H -0.27 -11.34 6.63 99.48 0.66 -10.68 16 28 C 0.08 3.24 5.22 83.50 0.44 3.67 16 29 O -0.36 -9.73 11.02 -148.98 -1.64 -11.37 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.11 8.01 -2.39 -0.02 1.09 16 33 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.08 1.12 7.96 -2.39 -0.02 1.10 16 36 H 0.41 6.89 8.46 -92.71 -0.78 6.10 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.09 1.45 8.06 -2.39 -0.02 1.43 16 41 H 0.07 2.08 7.82 -2.39 -0.02 2.06 16 42 H 0.08 2.17 7.81 -2.39 -0.02 2.15 16 43 H 0.06 2.09 7.91 -2.39 -0.02 2.07 16 44 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 45 H 0.25 15.99 8.73 -92.72 -0.81 15.18 16 46 H 0.05 2.00 7.69 -2.38 -0.02 1.98 16 47 H 0.05 2.11 4.50 -2.39 -0.01 2.10 16 Total: -1.00 -79.96 384.64 -1.73 -81.69 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -1.87 Total: 15.84 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 6.06 Total: 2.90 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -5.93 Total: -126.20 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -1.71 Total: -28.69 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 1.72 Total: 54.47 kcal Total: -79.96 -1.73 -81.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053681269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.029 kcal (2) G-P(sol) polarization free energy of solvation -79.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds