Wall clock time and date at job start Tue Mar 31 2020 18:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.35835 * 126.46045 * 2 1 4 4 H 0.97002 * 124.91594 * 0.02562 * 3 2 1 5 5 N 1.28460 * 110.16964 * 179.97438 * 3 2 1 6 6 C 1.31930 * 110.20970 * 359.97438 * 5 3 2 7 7 C 1.47525 * 126.46069 * 179.97438 * 6 5 3 8 8 O 1.21593 * 120.00342 * 186.24776 * 7 6 5 9 9 N 1.34784 * 119.99752 * 6.25533 * 7 6 5 10 10 C 1.46942 * 120.71309 * 175.72972 * 9 7 6 11 11 C 1.53197 * 108.89423 * 234.30816 * 10 9 7 12 12 C 1.53183 * 109.27708 * 304.61338 * 11 10 9 13 13 C 1.52060 * 109.73568 * 59.92509 * 12 11 10 14 14 C 1.54363 * 110.58578 * 177.70022 * 13 12 11 15 15 C 1.54463 * 102.86639 * 207.24153 * 14 13 12 16 16 N 1.47081 * 107.30113 * 21.48073 * 15 14 13 17 17 C 1.36939 * 125.62781 * 180.71720 * 16 15 14 18 18 H 1.07994 * 120.00131 * 180.02562 * 17 16 15 19 19 C 1.38808 * 120.00075 * 0.02562 * 17 16 15 20 20 N 1.31620 * 120.00179 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00075 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47198 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47254 * 120.00213 * 21 19 17 24 24 H 1.48510 * 109.47377 * 240.00158 * 21 19 17 25 25 C 1.47577 * 108.74283 * 0.97775 * 16 15 14 26 26 C 1.47093 * 120.71681 * 355.70326 * 9 7 6 27 27 C 1.35789 * 126.46126 * 180.30159 * 2 1 3 28 28 O 1.36083 * 127.26753 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.47129 * 90.02944 * 1 2 3 30 30 H 1.09009 * 109.47349 * 210.02188 * 1 2 3 31 31 H 1.08990 * 109.47446 * 330.02206 * 1 2 3 32 32 H 1.09000 * 109.56541 * 114.48991 * 10 9 7 33 33 H 1.08995 * 109.66928 * 354.19176 * 10 9 7 34 34 H 1.09001 * 109.50035 * 184.67198 * 11 10 9 35 35 H 1.08994 * 109.50097 * 64.55514 * 11 10 9 36 36 H 1.08999 * 109.42564 * 299.84480 * 12 11 10 37 37 H 1.09004 * 109.37675 * 179.97438 * 12 11 10 38 38 H 1.09006 * 110.73356 * 88.90307 * 14 13 12 39 39 H 1.08999 * 110.73965 * 325.58716 * 14 13 12 40 40 H 1.09000 * 109.87824 * 262.04589 * 15 14 13 41 41 H 1.09009 * 110.00105 * 140.97665 * 15 14 13 42 42 H 0.96998 * 120.00493 * 179.97438 * 20 19 17 43 43 H 1.09004 * 110.37216 * 95.54363 * 25 16 15 44 44 H 1.09001 * 110.37807 * 217.88927 * 25 16 15 45 45 H 1.08998 * 109.56828 * 7.97765 * 26 9 7 46 46 H 1.08998 * 109.56625 * 247.61879 * 26 9 7 47 47 H 0.96703 * 114.00167 * 270.17636 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0044 2.0117 0.0004 5 7 3.5472 0.7321 0.0005 6 6 3.6374 -0.5841 0.0015 7 6 4.8810 -1.3776 0.0018 8 8 4.8305 -2.5872 -0.1119 9 7 6.0733 -0.7619 0.1283 10 6 7.3146 -1.5423 0.2243 11 6 8.0702 -1.1190 1.4879 12 6 8.2987 0.3953 1.4571 13 6 6.9606 1.1155 1.4008 14 6 7.1660 2.6452 1.4269 15 6 5.8534 3.1576 2.0597 16 7 5.2609 2.0372 2.8059 17 6 4.0816 2.0764 3.5008 18 1 3.7305 1.1963 4.0188 19 6 3.3375 3.2476 3.5395 20 7 3.7651 4.3202 2.9078 21 14 1.7285 3.3010 4.4869 22 1 1.4721 1.9740 5.1024 23 1 1.8148 4.3326 5.5515 24 1 0.6188 3.6385 3.5594 25 6 6.1502 0.8654 2.6872 26 6 6.1599 0.7058 0.1726 27 6 2.3139 -1.0921 -0.0057 28 8 1.9326 -2.3984 -0.0121 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5134 32 1 7.9340 -1.3523 -0.6523 33 1 7.0767 -2.6045 0.2798 34 1 9.0315 -1.6315 1.5258 35 1 7.4828 -1.3806 2.3679 36 1 8.8876 0.6553 0.5775 37 1 8.8359 0.6984 2.3559 38 1 7.2854 3.0358 0.4163 39 1 8.0223 2.9091 2.0475 40 1 5.1685 3.4858 1.2779 41 1 6.0645 3.9843 2.7381 42 1 3.2450 5.1385 2.9345 43 1 6.8151 0.8049 3.5489 44 1 5.5635 -0.0485 2.5946 45 1 5.1572 1.1291 0.2327 46 1 6.6583 1.0694 -0.7260 47 1 1.8201 -2.7796 0.8694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054117352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:55 Heat of formation + Delta-G solvation = 14.500866 kcal Electronic energy + Delta-G solvation = -31696.026874 eV Core-core repulsion = 27687.920606 eV Total energy + Delta-G solvation = -4008.106267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.67893 -41.36086 -39.63429 -38.15129 -37.04815 -34.67655 -34.11209 -33.02470 -31.91596 -31.57209 -29.92997 -27.84339 -27.39149 -26.98828 -25.52671 -24.49376 -22.75439 -22.27115 -21.72536 -20.57077 -19.63230 -19.04194 -18.73935 -18.06136 -17.65666 -16.95676 -16.87973 -16.73608 -16.21664 -15.81440 -15.54652 -15.28271 -15.13322 -14.88527 -14.67077 -14.34383 -13.98976 -13.91645 -13.79652 -13.68171 -13.59745 -13.31595 -13.19867 -13.00888 -12.79123 -12.69292 -12.19162 -12.05746 -11.97081 -11.83541 -11.71912 -11.52984 -11.36787 -11.21640 -11.06116 -10.64689 -10.52758 -10.32469 -9.68348 -9.52833 -8.76483 -7.76104 -5.08243 0.52597 0.93085 1.39315 1.45458 1.52282 1.77699 2.07105 2.32983 2.50549 3.13507 3.39680 3.57876 3.70930 3.75813 3.85150 3.91764 3.98135 4.07258 4.15538 4.23618 4.40533 4.43324 4.53945 4.68851 4.72651 4.76216 4.82780 4.87570 4.89854 4.93221 4.96539 4.99812 5.09036 5.14511 5.18833 5.25663 5.30451 5.43837 5.48536 5.54065 5.71982 5.80234 5.89266 6.13341 6.27854 6.34018 6.77572 6.87681 7.16845 7.20230 7.86457 8.53351 9.33101 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.008803 B = 0.007435 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.797329 B = 3765.253110 C = 6156.317230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.005 3.995 3 N -0.360 5.360 4 H 0.457 0.543 5 N -0.223 5.223 6 C -0.061 4.061 7 C 0.598 3.402 8 O -0.568 6.568 9 N -0.591 5.591 10 C 0.108 3.892 11 C -0.126 4.126 12 C -0.098 4.098 13 C -0.072 4.072 14 C -0.121 4.121 15 C 0.192 3.808 16 N -0.609 5.609 17 C -0.217 4.217 18 H 0.057 0.943 19 C -0.050 4.050 20 N -0.940 5.940 21 Si 0.954 3.046 22 H -0.280 1.280 23 H -0.300 1.300 24 H -0.281 1.281 25 C 0.156 3.844 26 C 0.088 3.912 27 C 0.016 3.984 28 O -0.461 6.461 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.019 0.981 41 H 0.001 0.999 42 H 0.245 0.755 43 H 0.010 0.990 44 H 0.014 0.986 45 H 0.137 0.863 46 H 0.074 0.926 47 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.844 -6.967 -7.545 10.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.122 4.122 3 N -0.077 5.077 4 H 0.304 0.696 5 N -0.060 5.060 6 C -0.221 4.221 7 C 0.385 3.615 8 O -0.446 6.446 9 N -0.322 5.322 10 C -0.014 4.014 11 C -0.164 4.164 12 C -0.136 4.136 13 C -0.073 4.073 14 C -0.160 4.160 15 C 0.067 3.933 16 N -0.334 5.334 17 C -0.347 4.347 18 H 0.075 0.925 19 C -0.243 4.243 20 N -0.589 5.589 21 Si 0.784 3.216 22 H -0.206 1.206 23 H -0.227 1.227 24 H -0.207 1.207 25 C 0.031 3.969 26 C -0.035 4.035 27 C -0.039 4.039 28 O -0.268 6.268 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.037 0.963 41 H 0.019 0.981 42 H 0.054 0.946 43 H 0.028 0.972 44 H 0.032 0.968 45 H 0.154 0.846 46 H 0.092 0.908 47 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 2.328 -6.547 -8.179 10.732 hybrid contribution -1.567 0.139 1.545 2.205 sum 0.761 -6.408 -6.634 9.255 Atomic orbital electron populations 1.20452 0.83341 1.04990 1.04719 1.22022 0.96854 0.86359 1.06969 1.43416 1.02756 1.10089 1.51467 0.69640 1.73318 1.01989 1.12939 1.17748 1.22392 0.95581 0.90744 1.13404 1.17112 0.82331 0.85912 0.76118 1.90714 1.86943 1.14137 1.52822 1.48034 1.05742 1.08195 1.70193 1.21803 0.84039 0.96195 0.99330 1.21907 1.01165 0.96646 0.96666 1.21360 0.94693 0.94176 1.03352 1.21284 0.95852 0.95728 0.94470 1.22723 0.98020 0.93905 1.01338 1.20874 0.90740 0.88726 0.92929 1.44592 1.21420 1.08400 1.59017 1.19080 0.96447 0.96046 1.23111 0.92480 1.25235 1.01325 0.95747 1.02012 1.70162 1.39331 1.01494 1.47949 0.85383 0.81095 0.76833 0.78310 1.20570 1.22722 1.20749 1.21423 0.91390 0.89462 0.94644 1.22612 1.06233 0.78076 0.96602 1.17875 0.88943 0.85601 1.11510 1.84821 1.88705 1.19235 1.34043 0.88454 0.88634 0.89712 0.89190 0.90219 0.87634 0.93580 0.89476 0.91089 0.89888 0.90845 0.96316 0.98051 0.94569 0.97207 0.96796 0.84611 0.90820 0.74865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.44 71.23 0.74 -0.73 16 2 C 0.00 0.13 7.27 41.37 0.30 0.44 16 3 N -0.36 -11.53 6.87 -47.27 -0.32 -11.86 16 4 H 0.46 12.95 8.96 -219.99 -1.97 10.98 16 5 N -0.22 -8.31 8.55 -48.09 -0.41 -8.72 16 6 C -0.06 -2.35 6.90 42.45 0.29 -2.06 16 7 C 0.60 23.29 7.70 86.69 0.67 23.96 16 8 O -0.57 -24.06 15.98 -2.30 -0.04 -24.10 16 9 N -0.59 -19.73 2.60 -824.04 -2.15 -21.87 16 10 C 0.11 2.84 6.40 86.36 0.55 3.40 16 11 C -0.13 -2.95 5.93 30.72 0.18 -2.77 16 12 C -0.10 -2.39 4.64 30.35 0.14 -2.25 16 13 C -0.07 -2.33 0.55 -51.92 -0.03 -2.36 16 14 C -0.12 -4.13 5.89 31.55 0.19 -3.95 16 15 C 0.19 8.92 5.11 86.77 0.44 9.36 16 16 N -0.61 -29.77 3.33 -692.79 -2.31 -32.08 16 17 C -0.22 -11.72 10.28 84.03 0.86 -10.86 16 18 H 0.06 3.16 7.83 -2.91 -0.02 3.14 16 19 C -0.05 -2.66 5.49 84.86 0.47 -2.19 16 20 N -0.94 -52.30 10.31 21.65 0.22 -52.08 16 21 Si 0.95 43.48 29.55 68.60 2.03 45.51 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 C 0.16 6.49 5.20 86.54 0.45 6.94 16 26 C 0.09 2.93 4.87 86.01 0.42 3.35 16 27 C 0.02 0.56 7.28 22.57 0.16 0.73 16 28 O -0.46 -14.42 13.21 -92.79 -1.23 -15.65 16 29 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 2.26 7.03 -2.39 -0.02 2.25 16 34 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.05 1.30 7.40 -2.39 -0.02 1.28 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.07 1.68 8.10 -2.38 -0.02 1.67 16 38 H 0.08 2.47 7.99 -2.38 -0.02 2.45 16 39 H 0.07 2.31 8.00 -2.39 -0.02 2.29 16 40 H 0.02 0.96 7.40 -2.39 -0.02 0.94 16 41 H 0.00 0.07 7.48 -2.38 -0.02 0.05 16 42 H 0.24 13.32 8.31 -92.71 -0.77 12.55 16 43 H 0.01 0.43 7.97 -2.38 -0.02 0.41 16 44 H 0.01 0.63 7.65 -2.39 -0.02 0.61 16 45 H 0.14 5.27 3.50 -83.74 -0.29 4.98 16 46 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 47 H 0.40 9.33 9.07 -74.06 -0.67 8.66 16 Total: -1.00 -71.95 369.32 -0.27 -72.22 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: -1.91 Total: 27.61 kcal Atomic # 6 Polarization: 15.17 SS G_CDS: 5.84 Total: 21.01 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -4.97 Total: -126.60 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -1.26 Total: -39.74 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -71.95 -0.27 -72.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054117352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.720 kcal (2) G-P(sol) polarization free energy of solvation -71.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds